Wall clock time and date at job start Sun Mar 29 2020 22:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00108 * 2 1 4 4 C 1.53008 * 109.46975 * 125.00326 * 3 2 1 5 5 C 1.52999 * 109.46965 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46926 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47036 * 179.97438 * 6 5 4 8 8 C 1.46847 * 110.99862 * 66.05037 * 7 6 5 9 9 C 1.53044 * 109.51335 * 174.15436 * 8 7 6 10 10 C 1.53119 * 109.27589 * 59.18419 * 9 8 7 11 11 C 1.53120 * 109.16202 * 302.34077 * 10 9 8 12 12 H 1.08996 * 109.50004 * 297.72216 * 11 10 9 13 13 C 1.50697 * 109.50290 * 177.63586 * 11 10 9 14 14 H 1.07997 * 120.00495 * 240.00286 * 13 11 10 15 15 C 1.37880 * 119.99487 * 60.00267 * 13 11 10 16 16 N 1.31518 * 120.00428 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99610 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46846 * 90.00299 * 17 15 13 19 19 H 1.48500 * 109.47333 * 210.00213 * 17 15 13 20 20 H 1.48499 * 109.47310 * 330.00257 * 17 15 13 21 21 C 1.46847 * 110.99299 * 301.84195 * 7 6 5 22 22 H 1.07997 * 120.00309 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99752 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.99752 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47397 * 5.00601 * 3 2 1 26 26 H 1.08997 * 109.47262 * 244.99863 * 3 2 1 27 27 H 1.08999 * 109.46834 * 59.99930 * 4 3 2 28 28 H 1.08996 * 109.46703 * 300.00405 * 4 3 2 29 29 H 1.08999 * 109.47343 * 60.00314 * 5 4 3 30 30 H 1.08997 * 109.47101 * 300.00074 * 5 4 3 31 31 H 1.09004 * 109.47161 * 60.00228 * 6 5 4 32 32 H 1.08996 * 109.47358 * 300.00580 * 6 5 4 33 33 H 1.09002 * 109.46448 * 54.14158 * 8 7 6 34 34 H 1.08994 * 109.45958 * 294.16523 * 8 7 6 35 35 H 1.09000 * 109.49745 * 179.12223 * 9 8 7 36 36 H 1.08999 * 109.49729 * 299.20033 * 9 8 7 37 37 H 1.08993 * 109.52284 * 62.25342 * 10 9 8 38 38 H 1.09003 * 109.51690 * 182.37761 * 10 9 8 39 39 H 0.97001 * 119.99568 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.46836 * 65.83946 * 21 7 6 41 41 H 1.08995 * 109.45748 * 305.85482 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0352 1.3330 1.1816 5 6 3.8006 2.6577 1.1813 6 6 4.7718 2.6859 2.3632 7 7 5.5072 3.9575 2.3625 8 6 4.6057 5.0868 2.6241 9 6 5.4239 6.3730 2.7606 10 6 6.2097 6.6117 1.4683 11 6 7.1046 5.4000 1.1931 12 1 7.8246 5.2879 2.0037 13 6 7.8383 5.6015 -0.1076 14 1 7.7030 4.9008 -0.9182 15 6 8.6825 6.6806 -0.2628 16 7 8.8477 7.5337 0.7244 17 14 9.5926 6.9300 -1.8750 18 1 8.7662 7.7617 -2.7864 19 1 10.8838 7.6155 -1.6137 20 1 9.8514 5.6111 -2.5066 21 6 6.2377 4.1421 1.1021 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9354 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 1.3587 2.1317 0.0897 26 1 2.6213 1.4026 -0.9313 27 1 3.7400 0.5064 1.0920 28 1 2.4774 1.2354 2.1130 29 1 3.0961 3.4845 1.2707 30 1 4.3584 2.7548 0.2499 31 1 5.4765 1.8590 2.2743 32 1 4.2137 2.5889 3.2944 33 1 4.0560 4.9064 3.5479 34 1 3.9029 5.1895 1.7974 35 1 4.7533 7.2135 2.9392 36 1 6.1170 6.2763 3.5962 37 1 5.5151 6.7474 0.6394 38 1 6.8264 7.5040 1.5766 39 1 9.4420 8.2925 0.6152 40 1 5.5270 4.2493 0.2826 41 1 6.8733 3.2754 0.9207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:23 Heat of formation + Delta-G solvation = -8.419501 kcal Electronic energy + Delta-G solvation = -17081.137288 eV Core-core repulsion = 14574.121417 eV Total energy + Delta-G solvation = -2507.015871 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.58161 -36.27697 -34.18834 -32.54192 -31.03797 -29.81928 -27.44199 -24.90875 -24.17743 -21.88844 -21.38930 -20.72768 -19.84726 -18.21246 -16.36246 -15.81196 -15.03154 -14.93469 -14.30365 -14.16144 -14.02863 -13.27051 -13.09033 -12.95975 -12.56052 -12.12989 -11.99303 -11.66912 -11.62450 -11.20589 -11.02399 -10.93427 -10.81008 -10.73755 -10.61610 -10.28506 -9.96498 -9.76579 -9.50334 -9.40702 -8.98313 -8.66163 -8.26854 -7.52644 -5.94223 -4.00318 2.11646 3.32497 3.39283 3.42356 4.43392 4.60931 4.72867 4.90698 5.08164 5.10746 5.35621 5.39546 5.42987 5.65267 5.72010 5.76210 5.81668 5.89177 5.90702 5.95663 6.12228 6.15546 6.22358 6.40671 6.43632 6.47256 6.52902 6.58373 6.62307 6.77935 6.81611 7.03245 7.26785 7.45557 7.73577 7.79326 7.90206 8.13270 8.21845 8.52376 9.03982 9.63786 11.11718 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028310 B = 0.004981 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.813494 B = 5620.554281 C = 6267.726639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.098 4.098 4 C -0.108 4.108 5 C -0.160 4.160 6 C 0.056 3.944 7 N -0.538 5.538 8 C 0.062 3.938 9 C -0.118 4.118 10 C -0.110 4.110 11 C 0.053 3.947 12 H 0.033 0.967 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.066 3.934 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.107 0.893 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.025 0.975 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.022 0.978 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.569 -10.033 1.525 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.166 4.166 3 C -0.135 4.135 4 C -0.146 4.146 5 C -0.199 4.199 6 C -0.072 4.072 7 N -0.261 5.261 8 C -0.066 4.066 9 C -0.156 4.156 10 C -0.148 4.148 11 C 0.035 3.965 12 H 0.051 0.949 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.061 4.061 22 H 0.112 0.888 23 H 0.113 0.887 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.102 -9.870 1.963 15.739 hybrid contribution -0.183 0.180 -1.599 1.619 sum -12.285 -9.691 0.364 15.651 Atomic orbital electron populations 1.23828 0.96020 1.01635 1.02524 1.23047 0.96030 0.98760 0.98731 1.20825 0.98324 0.94938 0.99398 1.21455 0.97508 0.98013 0.97664 1.22314 0.99221 0.97206 1.01197 1.22185 0.95021 0.93377 0.96663 1.62222 1.26555 1.00964 1.36342 1.22025 0.94012 0.92011 0.98575 1.21688 0.98453 0.94421 1.01063 1.21642 0.97255 1.03299 0.92613 1.18671 0.92460 0.88474 0.96926 0.94888 1.21160 1.25314 1.09517 0.99268 0.92900 1.24938 0.96568 0.96012 0.96351 1.69898 1.37580 1.14137 1.31136 0.86640 0.79276 0.78218 0.84110 1.20812 1.21258 1.19976 1.22309 0.95706 1.00725 0.87330 0.88765 0.88707 0.87521 0.91679 0.90935 0.91935 0.92175 0.92107 0.91311 0.91290 0.91778 0.92660 0.95726 0.93673 0.92169 0.95273 0.89176 0.93101 0.95941 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.80 14.32 29.01 0.42 -1.38 16 2 C -0.15 -1.41 9.52 -36.03 -0.34 -1.75 16 3 C -0.10 -1.02 5.66 -27.88 -0.16 -1.18 16 4 C -0.11 -1.20 5.20 -26.73 -0.14 -1.33 16 5 C -0.16 -2.18 4.52 -26.73 -0.12 -2.30 16 6 C 0.06 0.84 5.36 -3.83 -0.02 0.82 16 7 N -0.54 -10.10 4.86 -234.67 -1.14 -11.24 16 8 C 0.06 1.11 5.05 -3.83 -0.02 1.09 16 9 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 10 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 11 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 12 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.51 -14.23 8.57 -34.44 -0.30 -14.53 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.59 11.35 55.43 0.63 -24.96 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.07 1.42 4.06 -3.83 -0.02 1.41 16 22 H 0.09 0.71 8.06 -52.49 -0.42 0.29 16 23 H 0.09 0.81 7.84 -52.48 -0.41 0.40 16 24 H 0.11 0.93 8.06 -52.48 -0.42 0.50 16 25 H 0.06 0.68 7.79 -51.93 -0.40 0.28 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 30 H 0.07 1.04 6.50 -51.93 -0.34 0.70 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 33 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.02 0.44 6.76 -51.93 -0.35 0.09 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.02 0.48 6.61 -51.93 -0.34 0.14 16 41 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -28.09 317.87 -9.58 -37.67 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.54 Total: -0.96 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -1.29 Total: -21.67 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.51 Total: -36.20 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.09 -9.58 -37.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.253 kcal (2) G-P(sol) polarization free energy of solvation -28.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds