Wall clock time and date at job start Sun Mar 29 2020 22:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00108 * 2 1 4 4 C 1.53008 * 109.46975 * 125.00326 * 3 2 1 5 5 C 1.52999 * 109.46965 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46926 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47036 * 179.97438 * 6 5 4 8 8 C 1.46847 * 110.99862 * 66.05037 * 7 6 5 9 9 C 1.53044 * 109.51335 * 174.15436 * 8 7 6 10 10 C 1.53119 * 109.27589 * 59.18419 * 9 8 7 11 11 C 1.53120 * 109.16202 * 302.34077 * 10 9 8 12 12 H 1.08996 * 109.50004 * 297.72216 * 11 10 9 13 13 C 1.50697 * 109.50290 * 177.63586 * 11 10 9 14 14 H 1.07997 * 120.00495 * 240.00286 * 13 11 10 15 15 C 1.37880 * 119.99487 * 60.00267 * 13 11 10 16 16 N 1.31518 * 120.00428 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99610 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46846 * 90.00299 * 17 15 13 19 19 H 1.48500 * 109.47333 * 210.00213 * 17 15 13 20 20 H 1.48499 * 109.47310 * 330.00257 * 17 15 13 21 21 C 1.46847 * 110.99299 * 301.84195 * 7 6 5 22 22 H 1.07997 * 120.00309 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99752 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.99752 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47397 * 5.00601 * 3 2 1 26 26 H 1.08997 * 109.47262 * 244.99863 * 3 2 1 27 27 H 1.08999 * 109.46834 * 59.99930 * 4 3 2 28 28 H 1.08996 * 109.46703 * 300.00405 * 4 3 2 29 29 H 1.08999 * 109.47343 * 60.00314 * 5 4 3 30 30 H 1.08997 * 109.47101 * 300.00074 * 5 4 3 31 31 H 1.09004 * 109.47161 * 60.00228 * 6 5 4 32 32 H 1.08996 * 109.47358 * 300.00580 * 6 5 4 33 33 H 1.09002 * 109.46448 * 54.14158 * 8 7 6 34 34 H 1.08994 * 109.45958 * 294.16523 * 8 7 6 35 35 H 1.09000 * 109.49745 * 179.12223 * 9 8 7 36 36 H 1.08999 * 109.49729 * 299.20033 * 9 8 7 37 37 H 1.08993 * 109.52284 * 62.25342 * 10 9 8 38 38 H 1.09003 * 109.51690 * 182.37761 * 10 9 8 39 39 H 0.97001 * 119.99568 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.46836 * 65.83946 * 21 7 6 41 41 H 1.08995 * 109.45748 * 305.85482 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0352 1.3330 1.1816 5 6 3.8006 2.6577 1.1813 6 6 4.7718 2.6859 2.3632 7 7 5.5072 3.9575 2.3625 8 6 4.6057 5.0868 2.6241 9 6 5.4239 6.3730 2.7606 10 6 6.2097 6.6117 1.4683 11 6 7.1046 5.4000 1.1931 12 1 7.8246 5.2879 2.0037 13 6 7.8383 5.6015 -0.1076 14 1 7.7030 4.9008 -0.9182 15 6 8.6825 6.6806 -0.2628 16 7 8.8477 7.5337 0.7244 17 14 9.5926 6.9300 -1.8750 18 1 8.7662 7.7617 -2.7864 19 1 10.8838 7.6155 -1.6137 20 1 9.8514 5.6111 -2.5066 21 6 6.2377 4.1421 1.1021 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9354 0.0004 24 1 1.8500 -0.9354 -0.0004 25 1 1.3587 2.1317 0.0897 26 1 2.6213 1.4026 -0.9313 27 1 3.7400 0.5064 1.0920 28 1 2.4774 1.2354 2.1130 29 1 3.0961 3.4845 1.2707 30 1 4.3584 2.7548 0.2499 31 1 5.4765 1.8590 2.2743 32 1 4.2137 2.5889 3.2944 33 1 4.0560 4.9064 3.5479 34 1 3.9029 5.1895 1.7974 35 1 4.7533 7.2135 2.9392 36 1 6.1170 6.2763 3.5962 37 1 5.5151 6.7474 0.6394 38 1 6.8264 7.5040 1.5766 39 1 9.4420 8.2925 0.6152 40 1 5.5270 4.2493 0.2826 41 1 6.8733 3.2754 0.9207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:23 Heat of formation + Delta-G solvation = -23.402858 kcal Electronic energy + Delta-G solvation = -17081.787015 eV Core-core repulsion = 14574.121417 eV Total energy + Delta-G solvation = -2507.665598 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10504 -37.29391 -35.73583 -34.14067 -32.34926 -31.67119 -28.56966 -26.92664 -25.49936 -23.29752 -22.88065 -22.09557 -20.62680 -19.88050 -18.42050 -16.89070 -16.60063 -16.24545 -15.82112 -15.47260 -15.30999 -14.80012 -14.43982 -14.36528 -14.05784 -13.68498 -13.35569 -13.09531 -12.85422 -12.74766 -12.61806 -12.49242 -12.26835 -11.96599 -11.79757 -11.72218 -11.65722 -11.34662 -11.27087 -10.83617 -10.65001 -10.37065 -10.20619 -9.00115 -8.07533 -6.21923 1.41079 1.41566 1.42337 1.52046 2.43071 3.19061 3.21473 3.83004 3.98674 4.15485 4.22064 4.23494 4.32392 4.38331 4.51551 4.55244 4.66397 4.70315 4.77943 4.83078 4.89606 4.91929 4.95800 5.01950 5.09658 5.11877 5.20198 5.24286 5.32395 5.42805 5.45959 5.54317 5.63978 5.76857 5.91921 5.98379 6.14671 6.23268 6.43472 6.48203 6.91221 7.45968 8.97102 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028310 B = 0.004981 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.813494 B = 5620.554281 C = 6267.726639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.097 4.097 4 C -0.100 4.100 5 C -0.152 4.152 6 C 0.057 3.943 7 N -0.552 5.552 8 C 0.066 3.934 9 C -0.113 4.113 10 C -0.103 4.103 11 C 0.050 3.950 12 H -0.006 1.006 13 C -0.537 4.537 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.083 3.917 22 H 0.108 0.892 23 H 0.096 0.904 24 H 0.115 0.885 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.021 0.979 38 H 0.057 0.943 39 H 0.260 0.740 40 H 0.020 0.980 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.102 -11.167 1.481 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.179 4.179 3 C -0.134 4.134 4 C -0.138 4.138 5 C -0.191 4.191 6 C -0.071 4.071 7 N -0.275 5.275 8 C -0.062 4.062 9 C -0.151 4.151 10 C -0.142 4.142 11 C 0.032 3.968 12 H 0.012 0.988 13 C -0.575 4.575 14 H 0.069 0.931 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.193 1.193 21 C -0.044 4.044 22 H 0.126 0.874 23 H 0.114 0.886 24 H 0.133 0.867 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.649 -11.020 1.923 17.648 hybrid contribution 0.280 0.529 -1.552 1.663 sum -13.369 -10.491 0.371 16.998 Atomic orbital electron populations 1.24010 0.95906 1.02443 1.01198 1.23068 0.96353 0.98528 0.99907 1.20784 0.98190 0.95622 0.98793 1.21378 0.97489 0.96497 0.98442 1.22197 0.98763 0.98667 0.99471 1.22276 0.95237 0.91296 0.98296 1.62144 1.27912 1.02910 1.34505 1.22020 0.93463 0.90448 1.00240 1.21610 0.98483 0.96890 0.98078 1.21449 0.96806 1.01250 0.94644 1.18609 0.92510 0.91119 0.94603 0.98810 1.21534 1.26080 1.09707 1.00200 0.93116 1.25736 0.97398 0.95723 0.99696 1.70044 1.38043 1.14477 1.32974 0.85616 0.78010 0.78330 0.80051 1.20114 1.20851 1.19271 1.21934 0.95302 0.98346 0.88849 0.87358 0.88573 0.86726 0.91850 0.91718 0.91480 0.91116 0.92393 0.93335 0.91056 0.89541 0.89501 0.95302 0.91311 0.93248 0.96017 0.92489 0.93077 0.96143 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.06 14.32 67.78 0.97 -2.09 16 2 C -0.16 -2.73 9.52 25.65 0.24 -2.49 16 3 C -0.10 -1.86 5.66 29.85 0.17 -1.69 16 4 C -0.10 -1.98 5.20 30.60 0.16 -1.83 16 5 C -0.15 -3.86 4.52 30.59 0.14 -3.72 16 6 C 0.06 1.57 5.36 86.30 0.46 2.04 16 7 N -0.55 -20.05 4.86 -896.35 -4.35 -24.41 16 8 C 0.07 2.23 5.05 86.33 0.44 2.66 16 9 C -0.11 -4.43 6.09 30.65 0.19 -4.25 16 10 C -0.10 -5.08 5.02 30.67 0.15 -4.93 16 11 C 0.05 2.64 2.26 -11.49 -0.03 2.61 16 12 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 13 C -0.54 -30.46 8.57 25.60 0.22 -30.24 16 14 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 15 C 0.01 0.74 5.30 84.65 0.45 1.19 16 16 N -0.92 -54.18 11.35 21.45 0.24 -53.94 16 17 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 C 0.08 3.60 4.06 86.33 0.35 3.95 16 22 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 23 H 0.10 1.44 7.84 -2.91 -0.02 1.41 16 24 H 0.11 1.74 8.06 -2.91 -0.02 1.72 16 25 H 0.06 1.22 7.79 -2.39 -0.02 1.21 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.51 6.68 -2.39 -0.02 1.49 16 30 H 0.05 1.43 6.50 -2.39 -0.02 1.41 16 31 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.09 2.06 8.06 -2.39 -0.02 2.04 16 33 H 0.09 2.44 8.06 -2.39 -0.02 2.42 16 34 H 0.03 0.96 6.76 -2.39 -0.02 0.95 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 3.17 6.15 -2.39 -0.01 3.15 16 39 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.02 0.89 6.61 -2.38 -0.02 0.87 16 41 H 0.05 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -61.22 317.87 2.78 -58.45 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.95 Total: 12.30 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 3.91 Total: -38.77 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -4.11 Total: -78.35 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.22 2.78 -58.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.043 kcal (2) G-P(sol) polarization free energy of solvation -61.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds