Wall clock time and date at job start Sun Mar 29 2020 22:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00563 * 2 1 4 4 C 1.52998 * 109.47479 * 124.99677 * 3 2 1 5 5 C 1.53001 * 109.47409 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47409 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47268 * 180.02562 * 6 5 4 8 8 C 1.46854 * 110.99665 * 293.95495 * 7 6 5 9 9 C 1.53037 * 109.51886 * 185.84309 * 8 7 6 10 10 C 1.53126 * 109.27801 * 300.81620 * 9 8 7 11 11 C 1.53124 * 109.15878 * 57.65645 * 10 9 8 12 12 H 1.08999 * 109.50059 * 62.28737 * 11 10 9 13 13 C 1.50696 * 109.50007 * 182.40592 * 11 10 9 14 14 H 1.07997 * 120.00077 * 120.00524 * 13 11 10 15 15 C 1.37872 * 120.00039 * 299.99707 * 13 11 10 16 16 N 1.31516 * 120.00300 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00131 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46842 * 90.00399 * 17 15 13 19 19 H 1.48495 * 109.47554 * 210.00488 * 17 15 13 20 20 H 1.48498 * 109.47227 * 330.00616 * 17 15 13 21 21 C 1.46844 * 111.00090 * 58.16171 * 7 6 5 22 22 H 1.07991 * 120.00144 * 179.97438 * 1 2 3 23 23 H 1.07998 * 119.99492 * 0.02562 * 1 2 3 24 24 H 1.08008 * 119.99557 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47063 * 4.99474 * 3 2 1 26 26 H 1.09004 * 109.47037 * 244.99947 * 3 2 1 27 27 H 1.08999 * 109.47139 * 59.99843 * 4 3 2 28 28 H 1.09004 * 109.47207 * 300.00166 * 4 3 2 29 29 H 1.08999 * 109.47199 * 59.99757 * 5 4 3 30 30 H 1.09004 * 109.46972 * 300.00187 * 5 4 3 31 31 H 1.08998 * 109.46651 * 59.99512 * 6 5 4 32 32 H 1.09003 * 109.46734 * 300.00278 * 6 5 4 33 33 H 1.08994 * 109.46310 * 65.82535 * 8 7 6 34 34 H 1.09004 * 109.45281 * 305.84691 * 8 7 6 35 35 H 1.09000 * 109.50480 * 180.88135 * 9 8 7 36 36 H 1.09002 * 109.53848 * 60.77851 * 9 8 7 37 37 H 1.08998 * 109.52297 * 177.56592 * 10 9 8 38 38 H 1.08999 * 109.51925 * 297.75795 * 10 9 8 39 39 H 0.97000 * 120.00526 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46133 * 294.17882 * 21 7 6 41 41 H 1.09002 * 109.46165 * 54.15521 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7998 2.6582 1.1820 6 6 4.7718 2.6859 2.3632 7 7 5.5055 3.9586 2.3639 8 6 6.3804 4.0621 1.1890 9 6 7.2336 5.3280 1.2969 10 6 6.3157 6.5506 1.3823 11 6 5.3820 6.3949 2.5859 12 1 5.9719 6.3582 3.5017 13 6 4.4352 7.5660 2.6429 14 1 3.3693 7.4020 2.5850 15 6 4.9298 8.8467 2.7691 16 7 6.2277 9.0466 2.8392 17 14 3.7562 10.2983 2.8405 18 1 3.3877 10.5679 4.2536 19 1 4.4158 11.4972 2.2637 20 1 2.5319 9.9839 2.0611 21 6 4.5825 5.0981 2.4407 22 1 -0.5400 -0.9352 -0.0004 23 1 -0.5399 0.9353 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3588 2.1316 0.0895 26 1 2.6215 1.4024 -0.9314 27 1 3.7400 0.5064 1.0922 28 1 2.4773 1.2355 2.1130 29 1 3.0947 3.4845 1.2717 30 1 4.3576 2.7561 0.2506 31 1 5.4768 1.8596 2.2730 32 1 4.2143 2.5878 3.2948 33 1 5.7718 4.1102 0.2861 34 1 7.0308 3.1887 1.1426 35 1 7.8717 5.4129 0.4172 36 1 7.8532 5.2748 2.1921 37 1 6.9183 7.4509 1.5027 38 1 5.7242 6.6264 0.4699 39 1 6.5757 9.9477 2.9276 40 1 3.9823 5.1412 1.5318 41 1 3.9272 4.9772 3.3033 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:25 Heat of formation + Delta-G solvation = -8.415018 kcal Electronic energy + Delta-G solvation = -17088.492114 eV Core-core repulsion = 14581.476438 eV Total energy + Delta-G solvation = -2507.015677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.58044 -36.27238 -34.18584 -32.53926 -31.03597 -29.81880 -27.43927 -24.90824 -24.17608 -21.88257 -21.39119 -20.72815 -19.83800 -18.21211 -16.35812 -15.80637 -15.13943 -14.75473 -14.44701 -14.11714 -13.92834 -13.49159 -12.97870 -12.85033 -12.53639 -12.22961 -12.02770 -11.71627 -11.45484 -11.27344 -11.01185 -10.93167 -10.80868 -10.72707 -10.61564 -10.28940 -9.96704 -9.76596 -9.49833 -9.40201 -8.98188 -8.66037 -8.26799 -7.52549 -5.94136 -4.00260 2.12532 3.32725 3.39334 3.42262 4.43475 4.61258 4.73574 4.90858 5.08026 5.11589 5.35746 5.39598 5.43660 5.66499 5.69657 5.79167 5.82755 5.87210 5.90184 5.96380 6.12221 6.15694 6.23444 6.41107 6.43422 6.47955 6.53043 6.58481 6.63206 6.77936 6.81743 7.03390 7.26847 7.45556 7.73640 7.79387 7.90279 8.13288 8.21984 8.52475 9.04012 9.63889 11.11816 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.005173 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.872142 B = 5411.481553 C = 6217.618904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.097 4.097 4 C -0.108 4.108 5 C -0.160 4.160 6 C 0.056 3.944 7 N -0.538 5.538 8 C 0.062 3.938 9 C -0.118 4.118 10 C -0.110 4.110 11 C 0.053 3.947 12 H 0.033 0.967 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.066 3.934 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.055 0.945 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.022 0.978 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.703 -14.578 -4.854 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.167 4.167 3 C -0.135 4.135 4 C -0.146 4.146 5 C -0.199 4.199 6 C -0.072 4.072 7 N -0.261 5.261 8 C -0.066 4.066 9 C -0.156 4.156 10 C -0.148 4.148 11 C 0.035 3.965 12 H 0.051 0.949 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.061 4.061 22 H 0.112 0.888 23 H 0.114 0.886 24 H 0.124 0.876 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.258 -14.402 -4.409 15.652 hybrid contribution -1.191 0.756 -0.760 1.602 sum -5.448 -13.646 -5.168 15.576 Atomic orbital electron populations 1.23847 0.96040 1.01705 1.02235 1.23030 0.96039 0.98676 0.98996 1.20819 0.98392 0.95068 0.99182 1.21454 0.97512 0.97798 0.97875 1.22316 0.99542 0.97626 1.00458 1.22184 0.95065 0.92846 0.97146 1.62221 1.21752 1.01999 1.40115 1.22024 0.95208 0.98314 0.91071 1.21688 0.98129 0.95594 1.00217 1.21645 0.97918 0.96932 0.98317 1.18673 0.93558 0.89364 0.94948 0.94895 1.21158 0.92839 0.91227 1.50036 0.92908 1.24932 0.94984 0.98736 0.95189 1.69893 1.11291 1.21214 1.50364 0.86641 0.81123 0.82319 0.78171 1.20713 1.21289 1.20047 1.22309 0.94055 0.91078 0.98637 0.88763 0.88611 0.87600 0.91500 0.91149 0.92149 0.91973 0.91345 0.92076 0.91770 0.91302 0.95715 0.92659 0.93669 0.92174 0.89163 0.95261 0.93098 0.95936 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 14.32 29.01 0.42 -1.41 16 2 C -0.15 -1.43 9.52 -36.03 -0.34 -1.77 16 3 C -0.10 -1.02 5.66 -27.89 -0.16 -1.18 16 4 C -0.11 -1.20 5.20 -26.73 -0.14 -1.34 16 5 C -0.16 -2.18 4.52 -26.73 -0.12 -2.30 16 6 C 0.06 0.84 5.36 -3.83 -0.02 0.82 16 7 N -0.54 -10.10 4.86 -234.67 -1.14 -11.24 16 8 C 0.06 1.11 5.05 -3.83 -0.02 1.09 16 9 C -0.12 -2.36 6.09 -26.65 -0.16 -2.53 16 10 C -0.11 -2.65 5.02 -26.60 -0.13 -2.78 16 11 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 12 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.51 -14.24 8.56 -34.44 -0.29 -14.54 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.60 11.35 55.43 0.63 -24.97 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.07 1.42 4.06 -3.84 -0.02 1.41 16 22 H 0.09 0.72 8.06 -52.49 -0.42 0.30 16 23 H 0.10 0.86 7.84 -52.49 -0.41 0.45 16 24 H 0.11 0.90 8.06 -52.48 -0.42 0.48 16 25 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.05 6.50 -51.93 -0.34 0.71 16 30 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 31 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.44 6.75 -51.93 -0.35 0.09 16 34 H 0.05 0.87 8.06 -51.93 -0.42 0.46 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.02 0.49 6.61 -51.93 -0.34 0.14 16 41 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -28.12 317.87 -9.58 -37.70 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.54 Total: -0.93 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -1.29 Total: -21.73 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.51 Total: -36.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.12 -9.58 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.282 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds