Wall clock time and date at job start Sun Mar 29 2020 22:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 120.00563 * 2 1 4 4 C 1.52998 * 109.47479 * 124.99677 * 3 2 1 5 5 C 1.53001 * 109.47409 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47409 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47268 * 180.02562 * 6 5 4 8 8 C 1.46854 * 110.99665 * 293.95495 * 7 6 5 9 9 C 1.53037 * 109.51886 * 185.84309 * 8 7 6 10 10 C 1.53126 * 109.27801 * 300.81620 * 9 8 7 11 11 C 1.53124 * 109.15878 * 57.65645 * 10 9 8 12 12 H 1.08999 * 109.50059 * 62.28737 * 11 10 9 13 13 C 1.50696 * 109.50007 * 182.40592 * 11 10 9 14 14 H 1.07997 * 120.00077 * 120.00524 * 13 11 10 15 15 C 1.37872 * 120.00039 * 299.99707 * 13 11 10 16 16 N 1.31516 * 120.00300 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00131 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46842 * 90.00399 * 17 15 13 19 19 H 1.48495 * 109.47554 * 210.00488 * 17 15 13 20 20 H 1.48498 * 109.47227 * 330.00616 * 17 15 13 21 21 C 1.46844 * 111.00090 * 58.16171 * 7 6 5 22 22 H 1.07991 * 120.00144 * 179.97438 * 1 2 3 23 23 H 1.07998 * 119.99492 * 0.02562 * 1 2 3 24 24 H 1.08008 * 119.99557 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47063 * 4.99474 * 3 2 1 26 26 H 1.09004 * 109.47037 * 244.99947 * 3 2 1 27 27 H 1.08999 * 109.47139 * 59.99843 * 4 3 2 28 28 H 1.09004 * 109.47207 * 300.00166 * 4 3 2 29 29 H 1.08999 * 109.47199 * 59.99757 * 5 4 3 30 30 H 1.09004 * 109.46972 * 300.00187 * 5 4 3 31 31 H 1.08998 * 109.46651 * 59.99512 * 6 5 4 32 32 H 1.09003 * 109.46734 * 300.00278 * 6 5 4 33 33 H 1.08994 * 109.46310 * 65.82535 * 8 7 6 34 34 H 1.09004 * 109.45281 * 305.84691 * 8 7 6 35 35 H 1.09000 * 109.50480 * 180.88135 * 9 8 7 36 36 H 1.09002 * 109.53848 * 60.77851 * 9 8 7 37 37 H 1.08998 * 109.52297 * 177.56592 * 10 9 8 38 38 H 1.08999 * 109.51925 * 297.75795 * 10 9 8 39 39 H 0.97000 * 120.00526 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.46133 * 294.17882 * 21 7 6 41 41 H 1.09002 * 109.46165 * 54.15521 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7998 2.6582 1.1820 6 6 4.7718 2.6859 2.3632 7 7 5.5055 3.9586 2.3639 8 6 6.3804 4.0621 1.1890 9 6 7.2336 5.3280 1.2969 10 6 6.3157 6.5506 1.3823 11 6 5.3820 6.3949 2.5859 12 1 5.9719 6.3582 3.5017 13 6 4.4352 7.5660 2.6429 14 1 3.3693 7.4020 2.5850 15 6 4.9298 8.8467 2.7691 16 7 6.2277 9.0466 2.8392 17 14 3.7562 10.2983 2.8405 18 1 3.3877 10.5679 4.2536 19 1 4.4158 11.4972 2.2637 20 1 2.5319 9.9839 2.0611 21 6 4.5825 5.0981 2.4407 22 1 -0.5400 -0.9352 -0.0004 23 1 -0.5399 0.9353 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3588 2.1316 0.0895 26 1 2.6215 1.4024 -0.9314 27 1 3.7400 0.5064 1.0922 28 1 2.4773 1.2355 2.1130 29 1 3.0947 3.4845 1.2717 30 1 4.3576 2.7561 0.2506 31 1 5.4768 1.8596 2.2730 32 1 4.2143 2.5878 3.2948 33 1 5.7718 4.1102 0.2861 34 1 7.0308 3.1887 1.1426 35 1 7.8717 5.4129 0.4172 36 1 7.8532 5.2748 2.1921 37 1 6.9183 7.4509 1.5027 38 1 5.7242 6.6264 0.4699 39 1 6.5757 9.9477 2.9276 40 1 3.9823 5.1412 1.5318 41 1 3.9272 4.9772 3.3033 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:25 Heat of formation + Delta-G solvation = -23.447201 kcal Electronic energy + Delta-G solvation = -17089.143959 eV Core-core repulsion = 14581.476438 eV Total energy + Delta-G solvation = -2507.667521 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.10414 -37.29389 -35.73701 -34.14049 -32.34982 -31.67151 -28.57181 -26.92799 -25.50087 -23.29283 -22.88513 -22.09465 -20.62868 -19.88043 -18.42227 -16.84591 -16.70015 -16.14041 -15.84955 -15.55003 -15.23301 -14.83657 -14.51124 -14.30985 -13.96031 -13.68595 -13.47577 -13.05598 -12.88298 -12.73063 -12.59653 -12.49158 -12.26391 -11.96135 -11.81215 -11.72114 -11.66410 -11.35297 -11.26603 -10.83271 -10.64581 -10.37566 -10.20712 -9.00072 -8.07692 -6.22136 1.41081 1.41247 1.42022 1.51628 2.42871 3.18937 3.21531 3.82852 3.98979 4.15423 4.19536 4.27047 4.30765 4.39894 4.51143 4.54450 4.66612 4.70997 4.78585 4.81264 4.87008 4.94222 4.97397 5.03858 5.06164 5.12364 5.20078 5.24550 5.32836 5.43108 5.45984 5.54198 5.63795 5.76279 5.92112 5.98334 6.14644 6.23232 6.43616 6.48137 6.90918 7.45794 8.96952 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.005173 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.872142 B = 5411.481553 C = 6217.618904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.097 4.097 4 C -0.100 4.100 5 C -0.152 4.152 6 C 0.057 3.943 7 N -0.552 5.552 8 C 0.066 3.934 9 C -0.113 4.113 10 C -0.103 4.103 11 C 0.050 3.950 12 H -0.006 1.006 13 C -0.537 4.537 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.083 3.917 22 H 0.109 0.891 23 H 0.092 0.908 24 H 0.120 0.880 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.029 0.971 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.021 0.979 39 H 0.260 0.740 40 H 0.020 0.980 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 -16.254 -5.565 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.176 4.176 3 C -0.134 4.134 4 C -0.138 4.138 5 C -0.191 4.191 6 C -0.071 4.071 7 N -0.275 5.275 8 C -0.062 4.062 9 C -0.151 4.151 10 C -0.141 4.141 11 C 0.031 3.969 12 H 0.012 0.988 13 C -0.576 4.576 14 H 0.068 0.932 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.044 4.044 22 H 0.127 0.873 23 H 0.110 0.890 24 H 0.138 0.862 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.839 -16.097 -5.121 17.572 hybrid contribution -0.999 1.264 -0.520 1.693 sum -5.838 -14.833 -5.641 16.909 Atomic orbital electron populations 1.24013 0.96124 1.02319 1.01510 1.23088 0.96239 0.98627 0.99617 1.20787 0.98200 0.95421 0.99020 1.21377 0.97630 0.96662 0.98124 1.22200 0.98920 0.98352 0.99640 1.22276 0.95659 0.91340 0.97826 1.62143 1.21839 1.02495 1.40993 1.22023 0.95159 0.98185 0.90802 1.21611 0.97786 0.94840 1.00825 1.21451 0.97816 0.97720 0.97163 1.18613 0.93506 0.91045 0.93701 0.98805 1.21530 0.93150 0.92571 1.50302 0.93178 1.25725 0.96555 1.01427 0.94779 1.70038 1.12896 1.21768 1.50820 0.85620 0.79165 0.78894 0.78356 1.20115 1.20779 1.19347 1.21932 0.93685 0.90637 0.98189 0.87269 0.89002 0.86239 0.92613 0.90986 0.90534 0.92005 0.93577 0.92178 0.89367 0.91212 0.95268 0.89410 0.91277 0.93256 0.92474 0.96005 0.93063 0.96189 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.30 14.32 67.78 0.97 -2.33 16 2 C -0.16 -2.67 9.52 25.64 0.24 -2.43 16 3 C -0.10 -1.87 5.66 29.85 0.17 -1.70 16 4 C -0.10 -1.97 5.20 30.59 0.16 -1.82 16 5 C -0.15 -3.86 4.52 30.59 0.14 -3.73 16 6 C 0.06 1.57 5.36 86.30 0.46 2.04 16 7 N -0.55 -20.05 4.86 -896.36 -4.35 -24.40 16 8 C 0.07 2.22 5.05 86.32 0.44 2.65 16 9 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 10 C -0.10 -5.08 5.02 30.68 0.15 -4.93 16 11 C 0.05 2.63 2.26 -11.49 -0.03 2.61 16 12 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 13 C -0.54 -30.54 8.56 25.60 0.22 -30.32 16 14 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 15 C 0.01 0.78 5.30 84.65 0.45 1.23 16 16 N -0.92 -54.18 11.35 21.45 0.24 -53.94 16 17 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 C 0.08 3.61 4.06 86.33 0.35 3.96 16 22 H 0.11 1.43 8.06 -2.92 -0.02 1.40 16 23 H 0.09 1.54 7.84 -2.91 -0.02 1.52 16 24 H 0.12 1.69 8.06 -2.91 -0.02 1.67 16 25 H 0.06 1.18 7.79 -2.39 -0.02 1.16 16 26 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.05 1.38 6.50 -2.39 -0.02 1.36 16 30 H 0.06 1.54 6.68 -2.38 -0.02 1.53 16 31 H 0.09 2.07 8.06 -2.39 -0.02 2.05 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.03 0.97 6.75 -2.39 -0.02 0.95 16 34 H 0.09 2.44 8.06 -2.38 -0.02 2.42 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.06 3.17 6.15 -2.39 -0.01 3.16 16 38 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.02 0.87 6.61 -2.39 -0.02 0.86 16 41 H 0.05 2.21 8.12 -2.39 -0.02 2.19 16 Total: -1.00 -61.43 317.87 2.78 -58.66 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.95 Total: 12.24 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 3.91 Total: -38.99 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -4.11 Total: -78.34 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -61.43 2.78 -58.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.212 kcal (2) G-P(sol) polarization free energy of solvation -61.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds