Wall clock time and date at job start Sun Mar 29 2020 21:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99754 * 2 1 4 4 H 1.48501 * 109.46925 * 239.99940 * 3 2 1 5 5 H 1.48495 * 109.47362 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47212 * 120.00140 * 3 2 1 7 7 C 1.37876 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99747 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00180 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47441 * 185.22685 * 9 7 2 11 11 C 1.47901 * 111.00303 * 175.77212 * 10 9 7 12 12 C 1.53995 * 107.05895 * 214.15582 * 11 10 9 13 13 C 1.54595 * 105.13911 * 1.22599 * 12 11 10 14 14 H 1.09000 * 110.72208 * 263.41897 * 13 12 11 15 15 C 1.53008 * 110.72352 * 140.31331 * 13 12 11 16 16 C 1.53000 * 109.47065 * 181.45150 * 15 13 12 17 17 C 1.52994 * 109.47433 * 180.02562 * 16 15 13 18 18 C 1.53005 * 109.47032 * 59.99963 * 17 16 15 19 19 C 1.53000 * 109.47041 * 300.00276 * 18 17 16 20 20 C 1.52997 * 109.46733 * 61.45601 * 15 13 12 21 21 C 1.48536 * 110.99728 * 58.37331 * 10 9 7 22 22 H 0.97001 * 120.00043 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47330 * 65.22496 * 9 7 2 24 24 H 1.09002 * 109.47274 * 305.22799 * 9 7 2 25 25 H 1.08996 * 109.91876 * 94.80097 * 11 10 9 26 26 H 1.08999 * 109.91673 * 333.50615 * 11 10 9 27 27 H 1.09004 * 110.30701 * 120.13717 * 12 11 10 28 28 H 1.08991 * 110.31095 * 242.21094 * 12 11 10 29 29 H 1.08998 * 109.47032 * 301.45389 * 15 13 12 30 30 H 1.09004 * 109.47011 * 300.00613 * 16 15 13 31 31 H 1.09002 * 109.47068 * 59.99801 * 16 15 13 32 32 H 1.08995 * 109.47304 * 300.00480 * 17 16 15 33 33 H 1.08994 * 109.47478 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47296 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.46723 * 59.99846 * 18 17 16 36 36 H 1.08998 * 109.47390 * 299.99987 * 19 18 17 37 37 H 1.09006 * 109.47089 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47085 * 299.99499 * 20 15 13 39 39 H 1.08998 * 109.47535 * 60.00095 * 20 15 13 40 40 H 1.09005 * 110.66672 * 41.29468 * 21 10 9 41 41 H 1.08992 * 110.81373 * 278.22509 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2006 -3.6128 0.1273 11 6 1.4902 -4.9057 0.2324 12 6 2.3223 -5.8037 1.1666 13 6 3.5211 -4.9308 1.6035 14 1 4.3933 -5.1348 0.9825 15 6 3.8460 -5.1578 3.0814 16 6 5.0111 -4.2550 3.4919 17 6 5.3365 -4.4824 4.9694 18 6 5.7246 -5.9464 5.1867 19 6 4.5595 -6.8492 4.7762 20 6 4.2339 -6.6217 3.2991 21 6 3.0029 -3.4892 1.3713 22 1 -0.4850 0.8400 0.0004 23 1 0.6968 -2.5987 -0.9327 24 1 0.5557 -2.5172 0.8397 25 1 1.4107 -5.3668 -0.7520 26 1 0.4972 -4.7506 0.6541 27 1 1.7316 -6.0968 2.0346 28 1 2.6707 -6.6867 0.6311 29 1 2.9712 -4.9198 3.6864 30 1 5.8859 -4.4930 2.8867 31 1 4.7348 -3.2121 3.3366 32 1 4.4618 -4.2448 5.5749 33 1 6.1661 -3.8389 5.2620 34 1 5.9559 -6.1085 6.2395 35 1 6.5992 -6.1841 4.5812 36 1 3.6848 -6.6115 5.3816 37 1 4.8361 -7.8922 4.9306 38 1 3.4039 -7.2649 3.0067 39 1 5.1088 -6.8597 2.6941 40 1 2.3761 -3.1671 2.2029 41 1 3.8348 -2.7996 1.2287 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595733863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:42 Heat of formation + Delta-G solvation = -34.642917 kcal Electronic energy + Delta-G solvation = -17518.130797 eV Core-core repulsion = 15009.977793 eV Total energy + Delta-G solvation = -2508.153004 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.31946 -37.23975 -33.35958 -31.99607 -30.80491 -29.59754 -27.43650 -26.10159 -23.05449 -22.50528 -21.67021 -19.83577 -19.73372 -19.39072 -16.38025 -15.59855 -15.21165 -14.63887 -14.18059 -14.07703 -14.03294 -13.42715 -12.97648 -12.81025 -12.47451 -12.19906 -12.11249 -11.81124 -11.48374 -11.09948 -11.03081 -10.97838 -10.81901 -10.63814 -10.60975 -10.44410 -10.37030 -10.05727 -9.84707 -9.70753 -9.61368 -9.09170 -8.42505 -7.23701 -6.00978 -4.02412 3.34453 3.38279 3.41402 4.44564 4.67850 4.74977 4.79859 5.07895 5.15441 5.22681 5.34916 5.39987 5.43504 5.53209 5.57443 5.58692 5.67333 5.70177 5.79839 5.98307 6.00699 6.03279 6.13543 6.19062 6.20796 6.25639 6.29894 6.39620 6.43979 6.50281 6.57030 6.63619 6.81796 6.85691 7.27982 7.42041 7.80378 8.04896 8.24581 8.57012 9.05886 9.62083 11.10312 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.005986 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.334715 B = 4676.729601 C = 5423.888011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.184 3.816 10 N -0.520 5.520 11 C 0.033 3.967 12 C -0.122 4.122 13 C -0.091 4.091 14 H 0.075 0.925 15 C -0.075 4.075 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.113 4.113 21 C 0.063 3.937 22 H 0.261 0.739 23 H 0.027 0.973 24 H -0.005 1.005 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.037 0.963 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 -12.583 8.880 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.058 3.942 10 N -0.244 5.244 11 C -0.096 4.096 12 C -0.160 4.160 13 C -0.110 4.110 14 H 0.093 0.907 15 C -0.094 4.094 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.065 4.065 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.013 0.987 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.853 -12.427 8.397 17.416 hybrid contribution -0.277 0.986 0.658 1.217 sum 8.576 -11.441 9.055 16.924 Atomic orbital electron populations 1.69954 1.06072 1.26831 1.50987 1.24991 0.94850 0.99296 0.95402 0.86576 0.79470 0.82806 0.78665 1.20127 1.21336 1.20279 1.21133 0.93414 0.90050 1.50213 0.92002 1.19874 0.90327 0.87798 0.96183 1.64809 1.23524 1.01850 1.34216 1.22808 0.96040 0.92230 0.98497 1.22428 0.96780 0.98060 0.98710 1.22201 0.97754 0.96359 0.94681 0.90688 1.21161 0.98050 0.94447 0.95774 1.21595 0.98154 1.00216 0.95345 1.21538 1.01011 0.95989 0.97189 1.21532 0.98197 0.95423 1.00432 1.21531 0.98430 0.98842 0.96883 1.21583 1.01103 0.96594 0.95754 1.22962 0.97542 0.94241 0.91773 0.92897 0.95504 0.98694 0.91758 0.94762 0.92244 0.92083 0.91453 0.92138 0.91339 0.92168 0.92339 0.92607 0.92218 0.92217 0.92518 0.92055 0.92201 0.94495 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.63 8.55 -34.44 -0.29 -14.92 16 8 H 0.06 1.75 7.04 -52.48 -0.37 1.38 16 9 C 0.18 4.98 4.60 -4.98 -0.02 4.95 16 10 N -0.52 -11.75 5.34 -231.89 -1.24 -12.99 16 11 C 0.03 0.62 6.70 -2.75 -0.02 0.60 16 12 C -0.12 -1.85 5.52 -25.37 -0.14 -1.99 16 13 C -0.09 -1.41 2.60 -88.75 -0.23 -1.64 16 14 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.08 -0.99 1.58 -90.62 -0.14 -1.13 16 16 C -0.12 -1.45 5.04 -26.73 -0.13 -1.59 16 17 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 18 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 19 C -0.12 -1.17 5.92 -26.75 -0.16 -1.33 16 20 C -0.11 -1.25 4.99 -26.76 -0.13 -1.38 16 21 C 0.06 1.26 4.27 -1.89 -0.01 1.25 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.00 -0.14 7.97 -51.93 -0.41 -0.55 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 27 H 0.06 0.84 7.60 -51.93 -0.39 0.45 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.95 8.12 -51.93 -0.42 0.52 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.96 7.37 -51.93 -0.38 0.58 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.67 7.16 -51.93 -0.37 0.29 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.79 7.91 -51.93 -0.41 0.38 16 41 H 0.07 1.55 7.35 -51.93 -0.38 1.17 16 LS Contribution 310.76 15.07 4.68 4.68 Total: -1.00 -29.71 310.76 -10.29 -40.01 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -7.75 Total: -3.75 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -1.70 Total: -18.41 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: -0.50 Total: -39.42 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.71 -10.29 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595733863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.363 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds