Wall clock time and date at job start Sun Mar 29 2020 21:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99754 * 2 1 4 4 H 1.48501 * 109.46925 * 239.99940 * 3 2 1 5 5 H 1.48495 * 109.47362 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47212 * 120.00140 * 3 2 1 7 7 C 1.37876 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99747 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00180 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47441 * 185.22685 * 9 7 2 11 11 C 1.47901 * 111.00303 * 175.77212 * 10 9 7 12 12 C 1.53995 * 107.05895 * 214.15582 * 11 10 9 13 13 C 1.54595 * 105.13911 * 1.22599 * 12 11 10 14 14 H 1.09000 * 110.72208 * 263.41897 * 13 12 11 15 15 C 1.53008 * 110.72352 * 140.31331 * 13 12 11 16 16 C 1.53000 * 109.47065 * 181.45150 * 15 13 12 17 17 C 1.52994 * 109.47433 * 180.02562 * 16 15 13 18 18 C 1.53005 * 109.47032 * 59.99963 * 17 16 15 19 19 C 1.53000 * 109.47041 * 300.00276 * 18 17 16 20 20 C 1.52997 * 109.46733 * 61.45601 * 15 13 12 21 21 C 1.48536 * 110.99728 * 58.37331 * 10 9 7 22 22 H 0.97001 * 120.00043 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47330 * 65.22496 * 9 7 2 24 24 H 1.09002 * 109.47274 * 305.22799 * 9 7 2 25 25 H 1.08996 * 109.91876 * 94.80097 * 11 10 9 26 26 H 1.08999 * 109.91673 * 333.50615 * 11 10 9 27 27 H 1.09004 * 110.30701 * 120.13717 * 12 11 10 28 28 H 1.08991 * 110.31095 * 242.21094 * 12 11 10 29 29 H 1.08998 * 109.47032 * 301.45389 * 15 13 12 30 30 H 1.09004 * 109.47011 * 300.00613 * 16 15 13 31 31 H 1.09002 * 109.47068 * 59.99801 * 16 15 13 32 32 H 1.08995 * 109.47304 * 300.00480 * 17 16 15 33 33 H 1.08994 * 109.47478 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47296 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.46723 * 59.99846 * 18 17 16 36 36 H 1.08998 * 109.47390 * 299.99987 * 19 18 17 37 37 H 1.09006 * 109.47089 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47085 * 299.99499 * 20 15 13 39 39 H 1.08998 * 109.47535 * 60.00095 * 20 15 13 40 40 H 1.09005 * 110.66672 * 41.29468 * 21 10 9 41 41 H 1.08992 * 110.81373 * 278.22509 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2006 -3.6128 0.1273 11 6 1.4902 -4.9057 0.2324 12 6 2.3223 -5.8037 1.1666 13 6 3.5211 -4.9308 1.6035 14 1 4.3933 -5.1348 0.9825 15 6 3.8460 -5.1578 3.0814 16 6 5.0111 -4.2550 3.4919 17 6 5.3365 -4.4824 4.9694 18 6 5.7246 -5.9464 5.1867 19 6 4.5595 -6.8492 4.7762 20 6 4.2339 -6.6217 3.2991 21 6 3.0029 -3.4892 1.3713 22 1 -0.4850 0.8400 0.0004 23 1 0.6968 -2.5987 -0.9327 24 1 0.5557 -2.5172 0.8397 25 1 1.4107 -5.3668 -0.7520 26 1 0.4972 -4.7506 0.6541 27 1 1.7316 -6.0968 2.0346 28 1 2.6707 -6.6867 0.6311 29 1 2.9712 -4.9198 3.6864 30 1 5.8859 -4.4930 2.8867 31 1 4.7348 -3.2121 3.3366 32 1 4.4618 -4.2448 5.5749 33 1 6.1661 -3.8389 5.2620 34 1 5.9559 -6.1085 6.2395 35 1 6.5992 -6.1841 4.5812 36 1 3.6848 -6.6115 5.3816 37 1 4.8361 -7.8922 4.9306 38 1 3.4039 -7.2649 3.0067 39 1 5.1088 -6.8597 2.6941 40 1 2.3761 -3.1671 2.2029 41 1 3.8348 -2.7996 1.2287 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595733863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:41 Heat of formation + Delta-G solvation = -51.895802 kcal Electronic energy + Delta-G solvation = -17518.878938 eV Core-core repulsion = 15009.977793 eV Total energy + Delta-G solvation = -2508.901145 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56614 -38.54973 -35.27644 -33.60827 -31.74475 -31.05749 -28.88832 -28.01677 -24.71307 -23.48071 -23.06530 -21.45517 -20.78725 -20.57673 -18.51519 -16.99902 -16.73667 -16.27166 -15.67377 -15.16819 -14.94989 -14.83740 -14.46582 -14.25590 -14.08222 -13.57495 -13.45787 -13.06170 -13.01061 -12.81482 -12.57476 -12.37625 -12.07161 -11.99137 -11.96040 -11.82504 -11.77556 -11.44946 -11.24603 -11.19026 -10.75173 -10.69432 -10.65386 -9.12394 -8.24766 -6.35699 1.37854 1.41694 1.49755 2.37550 3.08185 3.36355 3.67849 3.81192 3.86582 4.02200 4.11583 4.22998 4.33753 4.48489 4.51515 4.58560 4.71467 4.73628 4.74199 4.82613 4.84186 4.86561 4.95341 5.03868 5.07886 5.09335 5.19864 5.23266 5.29591 5.32008 5.33096 5.37920 5.46635 5.51017 5.56448 5.60800 5.69498 5.96468 6.24686 6.54194 6.80893 7.34718 8.87136 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.005986 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.334715 B = 4676.729601 C = 5423.888011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.200 3.800 10 N -0.532 5.532 11 C 0.026 3.974 12 C -0.110 4.110 13 C -0.077 4.077 14 H 0.083 0.917 15 C -0.070 4.070 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.108 4.108 21 C 0.064 3.936 22 H 0.265 0.735 23 H -0.001 1.001 24 H -0.037 1.037 25 H 0.075 0.925 26 H 0.020 0.980 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.014 0.986 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.608 -13.764 9.665 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.073 3.927 10 N -0.256 5.256 11 C -0.102 4.102 12 C -0.148 4.148 13 C -0.096 4.096 14 H 0.101 0.899 15 C -0.089 4.089 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.145 4.145 21 C -0.064 4.064 22 H 0.074 0.926 23 H 0.017 0.983 24 H -0.019 1.019 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.033 0.967 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.768 -13.632 9.186 19.651 hybrid contribution -0.909 1.339 0.390 1.665 sum 9.860 -12.293 9.576 18.440 Atomic orbital electron populations 1.70088 1.07822 1.28071 1.51504 1.25957 0.95775 1.03341 0.94530 0.85419 0.78208 0.77701 0.79223 1.19140 1.20537 1.19166 1.21417 0.93520 0.91128 1.50634 0.92036 1.19518 0.90322 0.89534 0.93360 1.64708 1.22929 1.02025 1.35899 1.22948 0.95839 0.91218 1.00192 1.22405 0.95913 0.97963 0.98540 1.22133 0.97953 0.92795 0.96758 0.89892 1.21099 0.97790 0.96492 0.93504 1.21583 0.98137 0.98713 0.96946 1.21526 1.01045 0.97456 0.95573 1.21526 0.98300 0.94060 1.01433 1.21532 0.98367 0.99893 0.95771 1.21545 1.01619 0.94434 0.96939 1.22934 0.96261 0.97363 0.89807 0.92579 0.98334 1.01898 0.90705 0.96202 0.90935 0.89089 0.92753 0.91500 0.93723 0.92801 0.91673 0.91307 0.91627 0.92594 0.90787 0.91436 0.91441 0.96748 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -31.32 8.55 25.60 0.22 -31.10 16 8 H 0.06 3.57 7.04 -2.91 -0.02 3.54 16 9 C 0.20 11.36 4.60 85.55 0.39 11.75 16 10 N -0.53 -24.73 5.34 -887.57 -4.74 -29.48 16 11 C 0.03 1.00 6.70 86.45 0.58 1.58 16 12 C -0.11 -3.13 5.52 31.47 0.17 -2.96 16 13 C -0.08 -2.30 2.60 -9.58 -0.02 -2.33 16 14 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 15 C -0.07 -1.73 1.58 -10.79 -0.02 -1.75 16 16 C -0.12 -2.81 5.04 30.59 0.15 -2.66 16 17 C -0.12 -2.38 5.92 30.59 0.18 -2.20 16 18 C -0.12 -1.90 5.92 30.60 0.18 -1.72 16 19 C -0.12 -1.95 5.92 30.58 0.18 -1.77 16 20 C -0.11 -2.05 4.99 30.58 0.15 -1.90 16 21 C 0.06 2.64 4.27 86.65 0.37 3.01 16 22 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 23 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H -0.04 -2.27 7.97 -2.39 -0.02 -2.29 16 25 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.02 0.80 7.67 -2.39 -0.02 0.78 16 27 H 0.07 1.90 7.60 -2.38 -0.02 1.88 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.05 1.49 8.12 -2.39 -0.02 1.47 16 30 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.04 1.27 7.37 -2.39 -0.02 1.25 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.07 1.22 7.16 -2.39 -0.02 1.20 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.01 0.64 7.91 -2.38 -0.02 0.62 16 41 H 0.06 2.60 7.35 -2.39 -0.02 2.58 16 Total: -1.00 -65.70 310.76 1.52 -64.17 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.95 Total: 7.12 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.01 Total: -31.47 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -4.46 Total: -87.15 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -65.70 1.52 -64.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595733863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.277 kcal (2) G-P(sol) polarization free energy of solvation -65.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds