Wall clock time and date at job start Sun Mar 29 2020 22:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99642 * 2 1 4 4 C 1.53002 * 109.47241 * 125.31136 * 3 2 1 5 5 N 1.46901 * 110.01597 * 305.20985 * 4 3 2 6 6 C 1.46901 * 111.00008 * 302.78692 * 5 4 3 7 7 C 1.52995 * 109.47297 * 175.47910 * 6 5 4 8 8 C 1.53001 * 109.47171 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47202 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99776 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00221 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99760 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00073 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47398 * 59.99324 * 13 11 9 15 15 H 1.48500 * 109.47170 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47091 * 299.99182 * 13 11 9 17 17 C 1.53873 * 110.03554 * 66.59968 * 4 3 2 18 18 C 1.54372 * 106.54794 * 119.34536 * 17 4 3 19 19 C 1.54898 * 104.21370 * 23.57875 * 18 17 4 20 20 C 1.54270 * 110.03255 * 183.81803 * 4 3 2 21 21 H 1.08008 * 119.99331 * 180.02562 * 1 2 3 22 22 H 1.07998 * 120.00234 * 0.02562 * 1 2 3 23 23 H 1.08008 * 120.00720 * 180.02562 * 2 1 3 24 24 H 1.08991 * 109.47324 * 5.30727 * 3 2 1 25 25 H 1.09007 * 109.46864 * 245.30403 * 3 2 1 26 26 H 1.00900 * 111.00196 * 178.83231 * 5 4 3 27 27 H 1.08999 * 109.47405 * 55.47578 * 6 5 4 28 28 H 1.09006 * 109.46653 * 295.47893 * 6 5 4 29 29 H 1.09002 * 109.46937 * 59.99997 * 7 6 5 30 30 H 1.08995 * 109.47310 * 300.00132 * 7 6 5 31 31 H 1.09005 * 109.47235 * 299.99620 * 8 7 6 32 32 H 1.08999 * 109.47248 * 59.99843 * 8 7 6 33 33 H 0.97003 * 119.99900 * 180.02562 * 12 11 9 34 34 H 1.08996 * 110.03804 * 238.62207 * 17 4 3 35 35 H 1.09004 * 110.03330 * 0.05513 * 17 4 3 36 36 H 1.08996 * 110.46727 * 264.90308 * 18 17 4 37 37 H 1.08996 * 110.49123 * 142.26752 * 18 17 4 38 38 H 1.08996 * 110.75367 * 203.75941 * 19 18 17 39 39 H 1.08997 * 110.75402 * 80.38395 * 19 18 17 40 40 H 1.08997 * 110.48769 * 335.73622 * 20 4 3 41 41 H 1.09004 * 110.48181 * 98.37741 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0405 1.3300 1.1771 5 7 2.3223 1.0718 2.4323 6 6 1.2449 2.0500 2.6332 7 6 0.4504 1.6831 3.8882 8 6 -0.6713 2.7023 4.0977 9 6 -1.4535 2.3413 5.3343 10 1 -1.1784 1.4717 5.9125 11 6 -2.5211 3.1206 5.7267 12 7 -2.8564 4.1793 5.0222 13 14 -3.4910 2.6727 7.2590 14 1 -2.5874 2.6824 8.4373 15 1 -4.5797 3.6620 7.4624 16 1 -4.0769 1.3180 7.0955 17 6 4.1400 0.2733 0.9720 18 6 5.4806 1.0371 0.9244 19 6 5.1948 2.3549 1.6867 20 6 3.7501 2.6981 1.2461 21 1 -0.5399 -0.9354 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8501 -0.9353 -0.0004 24 1 1.3589 2.1314 0.0950 25 1 2.6169 1.4051 -0.9337 26 1 2.9564 1.0660 3.2172 27 1 0.5816 2.0428 1.7683 28 1 1.6748 3.0445 2.7531 29 1 1.1137 1.6904 4.7531 30 1 0.0206 0.6887 3.7683 31 1 -0.2411 3.6967 4.2179 32 1 -1.3347 2.6955 3.2328 33 1 -3.6073 4.7278 5.2985 34 1 4.1407 -0.4312 1.8037 35 1 3.9780 -0.2567 0.0334 36 1 5.7634 1.2468 -0.1072 37 1 6.2623 0.4676 1.4270 38 1 5.8886 3.1373 1.3791 39 1 5.2427 2.1961 2.7640 40 1 3.7533 3.1760 0.2665 41 1 3.2688 3.3406 1.9835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595780130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:24 Heat of formation + Delta-G solvation = -10.577236 kcal Electronic energy + Delta-G solvation = -17229.659553 eV Core-core repulsion = 14722.550115 eV Total energy + Delta-G solvation = -2507.109437 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.55520 -35.12887 -34.18502 -32.86371 -30.87175 -28.87508 -28.43932 -26.01506 -24.47371 -22.48914 -20.98731 -19.86616 -19.68250 -18.48563 -16.25907 -16.11172 -15.71768 -15.03748 -14.51935 -14.30734 -13.76843 -13.44257 -13.24185 -13.03996 -12.34823 -12.13083 -11.91735 -11.65527 -11.52558 -11.15166 -11.14273 -10.99696 -10.81267 -10.61536 -10.55786 -10.49835 -10.44057 -10.24768 -9.57608 -9.25301 -9.01220 -8.95598 -8.29515 -7.98836 -5.95026 -3.96770 2.65503 3.36674 3.40529 3.43537 4.36473 4.50962 4.55329 4.66974 4.89718 5.15114 5.32590 5.34645 5.40675 5.43252 5.53317 5.58699 5.65733 5.74070 5.79959 5.82355 5.90878 6.01420 6.02664 6.07779 6.11674 6.21652 6.27517 6.37806 6.49840 6.81768 6.90510 6.93410 7.10184 7.22422 7.52299 7.73673 7.77314 7.90977 8.06000 8.49830 9.10300 9.66872 11.16436 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032152 B = 0.004938 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.664959 B = 5669.274780 C = 6079.356392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 C -0.081 4.081 4 C 0.119 3.881 5 N -0.672 5.672 6 C 0.055 3.945 7 C -0.104 4.104 8 C 0.023 3.977 9 C -0.517 4.517 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.113 4.113 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.160 4.160 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.335 0.665 27 H 0.070 0.930 28 H 0.023 0.977 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.012 0.988 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.692 -5.701 -10.556 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.147 4.147 3 C -0.119 4.119 4 C 0.027 3.973 5 N -0.302 5.302 6 C -0.073 4.073 7 C -0.142 4.142 8 C -0.014 4.014 9 C -0.556 4.556 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.151 4.151 18 C -0.163 4.163 19 C -0.161 4.161 20 C -0.199 4.199 21 H 0.110 0.890 22 H 0.111 0.889 23 H 0.120 0.880 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.131 -6.037 -10.841 18.805 hybrid contribution -0.150 0.687 1.172 1.366 sum 13.980 -5.350 -9.669 17.820 Atomic orbital electron populations 1.23724 0.95977 1.01520 1.01887 1.22550 0.95582 0.97562 0.99033 1.20895 0.97864 0.96413 0.96681 1.21489 0.92208 0.92524 0.91082 1.60745 1.14083 1.52127 1.03206 1.22195 0.92804 0.92106 1.00211 1.21577 0.97706 1.00876 0.94038 1.19049 0.92229 0.93508 0.96644 1.21231 1.13431 1.10910 1.10012 0.92795 1.25019 0.97373 0.95104 0.96980 1.69960 1.28368 1.16158 1.39206 0.86671 0.79645 0.78161 0.83597 1.20302 1.21332 1.20239 1.22277 0.92919 0.97617 1.02302 1.22399 0.97405 0.96379 1.00138 1.22456 0.96494 0.97156 1.00012 1.23197 0.96088 0.98709 1.01904 0.89015 0.88871 0.87995 0.91361 0.91305 0.84725 0.91171 0.95876 0.93944 0.92709 0.96990 0.96715 0.93046 0.90881 0.91449 0.91927 0.91925 0.91916 0.91644 0.91487 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 13.80 29.02 0.40 -2.29 16 2 C -0.13 -1.67 8.35 -36.02 -0.30 -1.97 16 3 C -0.08 -1.00 3.84 -27.88 -0.11 -1.11 16 4 C 0.12 1.44 0.51 -130.48 -0.07 1.37 16 5 N -0.67 -9.79 5.43 -98.83 -0.54 -10.32 16 6 C 0.06 0.97 4.99 -3.83 -0.02 0.95 16 7 C -0.10 -2.22 5.45 -26.73 -0.15 -2.36 16 8 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 9 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 10 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 13 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C -0.11 -1.18 5.78 -25.56 -0.15 -1.33 16 18 C -0.13 -1.15 6.83 -25.01 -0.17 -1.32 16 19 C -0.12 -1.24 6.91 -24.73 -0.17 -1.41 16 20 C -0.16 -1.86 5.83 -25.07 -0.15 -2.00 16 21 H 0.09 1.19 8.06 -52.48 -0.42 0.76 16 22 H 0.09 1.36 7.76 -52.49 -0.41 0.95 16 23 H 0.10 1.23 7.54 -52.48 -0.40 0.84 16 24 H 0.07 0.93 6.27 -51.93 -0.33 0.61 16 25 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.33 4.71 8.78 -39.29 -0.34 4.37 16 27 H 0.07 1.28 5.48 -51.93 -0.28 0.99 16 28 H 0.02 0.41 6.33 -51.93 -0.33 0.08 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 34 H 0.07 0.81 7.92 -51.93 -0.41 0.39 16 35 H 0.07 0.66 7.10 -51.93 -0.37 0.30 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.74 7.86 -51.93 -0.41 0.33 16 41 H 0.07 0.95 6.04 -51.93 -0.31 0.64 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -29.86 319.85 -8.78 -38.65 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.36 Total: 1.34 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -1.42 Total: -24.81 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.20 Total: -37.06 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.86 -8.78 -38.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.069 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds