Wall clock time and date at job start Sun Mar 29 2020 22:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99642 * 2 1 4 4 C 1.53002 * 109.47241 * 125.31136 * 3 2 1 5 5 N 1.46901 * 110.01597 * 305.20985 * 4 3 2 6 6 C 1.46901 * 111.00008 * 302.78692 * 5 4 3 7 7 C 1.52995 * 109.47297 * 175.47910 * 6 5 4 8 8 C 1.53001 * 109.47171 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47202 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99776 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00221 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99760 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00073 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47398 * 59.99324 * 13 11 9 15 15 H 1.48500 * 109.47170 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47091 * 299.99182 * 13 11 9 17 17 C 1.53873 * 110.03554 * 66.59968 * 4 3 2 18 18 C 1.54372 * 106.54794 * 119.34536 * 17 4 3 19 19 C 1.54898 * 104.21370 * 23.57875 * 18 17 4 20 20 C 1.54270 * 110.03255 * 183.81803 * 4 3 2 21 21 H 1.08008 * 119.99331 * 180.02562 * 1 2 3 22 22 H 1.07998 * 120.00234 * 0.02562 * 1 2 3 23 23 H 1.08008 * 120.00720 * 180.02562 * 2 1 3 24 24 H 1.08991 * 109.47324 * 5.30727 * 3 2 1 25 25 H 1.09007 * 109.46864 * 245.30403 * 3 2 1 26 26 H 1.00900 * 111.00196 * 178.83231 * 5 4 3 27 27 H 1.08999 * 109.47405 * 55.47578 * 6 5 4 28 28 H 1.09006 * 109.46653 * 295.47893 * 6 5 4 29 29 H 1.09002 * 109.46937 * 59.99997 * 7 6 5 30 30 H 1.08995 * 109.47310 * 300.00132 * 7 6 5 31 31 H 1.09005 * 109.47235 * 299.99620 * 8 7 6 32 32 H 1.08999 * 109.47248 * 59.99843 * 8 7 6 33 33 H 0.97003 * 119.99900 * 180.02562 * 12 11 9 34 34 H 1.08996 * 110.03804 * 238.62207 * 17 4 3 35 35 H 1.09004 * 110.03330 * 0.05513 * 17 4 3 36 36 H 1.08996 * 110.46727 * 264.90308 * 18 17 4 37 37 H 1.08996 * 110.49123 * 142.26752 * 18 17 4 38 38 H 1.08996 * 110.75367 * 203.75941 * 19 18 17 39 39 H 1.08997 * 110.75402 * 80.38395 * 19 18 17 40 40 H 1.08997 * 110.48769 * 335.73622 * 20 4 3 41 41 H 1.09004 * 110.48181 * 98.37741 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0405 1.3300 1.1771 5 7 2.3223 1.0718 2.4323 6 6 1.2449 2.0500 2.6332 7 6 0.4504 1.6831 3.8882 8 6 -0.6713 2.7023 4.0977 9 6 -1.4535 2.3413 5.3343 10 1 -1.1784 1.4717 5.9125 11 6 -2.5211 3.1206 5.7267 12 7 -2.8564 4.1793 5.0222 13 14 -3.4910 2.6727 7.2590 14 1 -2.5874 2.6824 8.4373 15 1 -4.5797 3.6620 7.4624 16 1 -4.0769 1.3180 7.0955 17 6 4.1400 0.2733 0.9720 18 6 5.4806 1.0371 0.9244 19 6 5.1948 2.3549 1.6867 20 6 3.7501 2.6981 1.2461 21 1 -0.5399 -0.9354 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8501 -0.9353 -0.0004 24 1 1.3589 2.1314 0.0950 25 1 2.6169 1.4051 -0.9337 26 1 2.9564 1.0660 3.2172 27 1 0.5816 2.0428 1.7683 28 1 1.6748 3.0445 2.7531 29 1 1.1137 1.6904 4.7531 30 1 0.0206 0.6887 3.7683 31 1 -0.2411 3.6967 4.2179 32 1 -1.3347 2.6955 3.2328 33 1 -3.6073 4.7278 5.2985 34 1 4.1407 -0.4312 1.8037 35 1 3.9780 -0.2567 0.0334 36 1 5.7634 1.2468 -0.1072 37 1 6.2623 0.4676 1.4270 38 1 5.8886 3.1373 1.3791 39 1 5.2427 2.1961 2.7640 40 1 3.7533 3.1760 0.2665 41 1 3.2688 3.3406 1.9835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595780130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:23 Heat of formation + Delta-G solvation = -27.233223 kcal Electronic energy + Delta-G solvation = -17230.381810 eV Core-core repulsion = 14722.550115 eV Total energy + Delta-G solvation = -2507.831695 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.56436 -36.62321 -35.41720 -34.66242 -32.54554 -29.94180 -29.49917 -27.75991 -25.65268 -24.15689 -22.27084 -21.31617 -20.70069 -19.51914 -18.46069 -17.12979 -16.87985 -16.50199 -16.12699 -15.55738 -15.19275 -14.49213 -14.35568 -14.23799 -14.16155 -13.61084 -13.34531 -13.08322 -12.81686 -12.66062 -12.54695 -12.30961 -12.13538 -11.90251 -11.85320 -11.69628 -11.50442 -11.36373 -11.34326 -11.20991 -11.01586 -10.55243 -10.02520 -9.20955 -8.20193 -6.31486 1.39123 1.42673 1.50607 1.58375 2.40813 3.12645 3.26239 3.65486 3.75781 3.98419 4.20615 4.26101 4.34593 4.43679 4.47318 4.54400 4.61265 4.71575 4.77125 4.78846 4.88706 4.95490 4.98727 5.02155 5.09262 5.13957 5.18814 5.22660 5.26445 5.30697 5.48396 5.51067 5.53987 5.75763 5.85584 5.86306 6.03152 6.20702 6.32426 6.59817 6.85036 7.37699 8.91615 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.032152 B = 0.004938 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.664959 B = 5669.274780 C = 6079.356392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.120 4.120 3 C -0.083 4.083 4 C 0.117 3.883 5 N -0.670 5.670 6 C 0.072 3.928 7 C -0.088 4.088 8 C 0.028 3.972 9 C -0.544 4.544 10 H 0.058 0.942 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.109 4.109 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.160 4.160 21 H 0.098 0.902 22 H 0.076 0.924 23 H 0.117 0.883 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.340 0.660 27 H 0.061 0.939 28 H 0.019 0.981 29 H 0.046 0.954 30 H 0.048 0.952 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.125 -6.915 -10.391 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.138 4.138 3 C -0.121 4.121 4 C 0.026 3.974 5 N -0.301 5.301 6 C -0.057 4.057 7 C -0.126 4.126 8 C -0.010 4.010 9 C -0.582 4.582 10 H 0.076 0.924 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.192 1.192 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.159 4.159 20 C -0.199 4.199 21 H 0.117 0.883 22 H 0.095 0.905 23 H 0.135 0.865 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.158 0.842 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.585 -7.261 -10.682 20.242 hybrid contribution -0.578 1.094 1.076 1.640 sum 15.007 -6.167 -9.606 18.856 Atomic orbital electron populations 1.23749 0.96624 1.01166 1.03676 1.22731 0.95277 0.98381 0.97394 1.20949 0.97752 0.95437 0.97913 1.21607 0.92504 0.93813 0.89464 1.60681 1.14003 1.50783 1.04602 1.21833 0.93361 0.92623 0.97862 1.21323 0.96464 0.98731 0.96122 1.18941 0.93210 0.93774 0.95028 1.21663 1.14254 1.11290 1.10954 0.92368 1.25990 0.98460 0.94813 1.00538 1.70097 1.28995 1.17227 1.41113 0.85497 0.78081 0.78221 0.79236 1.19104 1.20675 1.19200 1.22249 0.92742 0.96993 1.02704 1.22377 0.96847 0.95515 1.00857 1.22456 0.95364 0.98163 0.99932 1.23164 0.97092 0.97907 1.01748 0.88318 0.90512 0.86468 0.93313 0.89034 0.84170 0.92026 0.96335 0.93508 0.93307 0.99380 0.99356 0.92772 0.91250 0.90327 0.90719 0.90712 0.90820 0.92098 0.90720 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.00 13.80 67.78 0.94 -5.06 16 2 C -0.12 -2.97 8.35 25.65 0.21 -2.75 16 3 C -0.08 -1.96 3.84 29.85 0.11 -1.84 16 4 C 0.12 2.67 0.51 4.25 0.00 2.67 16 5 N -0.67 -19.01 5.43 -466.59 -2.53 -21.54 16 6 C 0.07 2.59 4.99 86.30 0.43 3.02 16 7 C -0.09 -3.84 5.45 30.59 0.17 -3.68 16 8 C 0.03 1.55 4.97 29.85 0.15 1.70 16 9 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 10 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 11 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 12 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 13 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 C -0.11 -1.97 5.78 31.35 0.18 -1.79 16 18 C -0.12 -1.78 6.83 31.71 0.22 -1.56 16 19 C -0.12 -2.16 6.91 31.89 0.22 -1.94 16 20 C -0.16 -3.51 5.83 31.67 0.18 -3.33 16 21 H 0.10 2.55 8.06 -2.91 -0.02 2.52 16 22 H 0.08 2.36 7.76 -2.91 -0.02 2.34 16 23 H 0.12 2.56 7.54 -2.91 -0.02 2.54 16 24 H 0.05 1.34 6.27 -2.39 -0.01 1.33 16 25 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.34 9.17 8.78 -89.69 -0.79 8.39 16 27 H 0.06 2.32 5.48 -2.39 -0.01 2.31 16 28 H 0.02 0.68 6.33 -2.38 -0.02 0.67 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 32 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.07 1.34 7.92 -2.39 -0.02 1.32 16 35 H 0.08 1.27 7.10 -2.38 -0.02 1.25 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.52 7.86 -2.39 -0.02 1.50 16 41 H 0.05 1.32 6.04 -2.39 -0.01 1.31 16 Total: -1.00 -64.45 319.85 3.48 -60.98 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.19 Total: 17.25 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 3.51 Total: -46.01 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -2.25 Total: -79.52 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -64.45 3.48 -60.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.744 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds