Wall clock time and date at job start Sun Mar 29 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53137 * 109.38364 * 2 1 4 4 C 1.53705 * 108.89004 * 185.93046 * 3 2 1 5 5 H 1.09000 * 112.62108 * 188.04076 * 4 3 2 6 6 C 1.54613 * 107.81189 * 312.38177 * 4 3 2 7 7 C 1.54284 * 104.84133 * 88.55223 * 6 4 3 8 8 C 1.54611 * 104.84547 * 0.02562 * 7 6 4 9 9 H 1.08996 * 112.22063 * 146.85735 * 8 7 6 10 10 C 1.53133 * 109.42868 * 239.76635 * 2 1 3 11 11 N 1.48713 * 107.23872 * 64.08790 * 4 3 2 12 12 C 1.46901 * 111.00655 * 168.34809 * 11 4 3 13 13 C 1.52992 * 109.47859 * 170.00178 * 12 11 4 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00289 * 19 17 15 21 21 H 1.48505 * 109.47195 * 210.00171 * 19 17 15 22 22 H 1.48493 * 109.47449 * 330.00136 * 19 17 15 23 23 H 1.08995 * 109.47208 * 180.23380 * 1 2 3 24 24 H 1.08999 * 109.46848 * 300.23685 * 1 2 3 25 25 H 1.08998 * 109.47167 * 60.23535 * 1 2 3 26 26 H 1.09001 * 109.42857 * 119.87008 * 2 1 3 27 27 H 1.09005 * 109.56867 * 66.10972 * 3 2 1 28 28 H 1.09001 * 109.56787 * 305.75752 * 3 2 1 29 29 H 1.08994 * 110.36416 * 207.39573 * 6 4 3 30 30 H 1.08998 * 110.36192 * 329.60038 * 6 4 3 31 31 H 1.08996 * 110.36565 * 118.84616 * 7 6 4 32 32 H 1.09001 * 110.36674 * 241.05577 * 7 6 4 33 33 H 1.09003 * 109.57129 * 54.22025 * 10 2 1 34 34 H 1.09004 * 109.66540 * 293.92111 * 10 2 1 35 35 H 1.09002 * 109.46980 * 49.99837 * 12 11 4 36 36 H 1.09001 * 109.46628 * 290.00259 * 12 11 4 37 37 H 1.09002 * 109.47103 * 59.99734 * 13 12 11 38 38 H 1.08998 * 109.46862 * 300.00546 * 13 12 11 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0383 1.4446 0.0000 4 6 3.5679 1.4339 -0.1503 5 1 4.0091 2.4218 -0.0179 6 6 4.1344 0.4017 0.8518 7 6 4.1350 -0.9361 0.0833 8 6 3.5695 -0.5906 -1.3136 9 1 4.0116 -1.2023 -2.1001 10 6 2.0394 -0.7272 -1.2477 11 7 3.8757 0.8544 -1.4848 12 6 5.2887 1.0549 -1.8329 13 6 5.6272 0.2388 -3.0819 14 6 7.0987 0.4482 -3.4447 15 6 7.4323 -0.3563 -4.6746 16 1 6.6708 -0.9565 -5.1502 17 6 8.7094 -0.3251 -5.1933 18 7 9.6365 0.4063 -4.6145 19 14 9.1226 -1.3217 -6.7182 20 1 8.8779 -0.4979 -7.9293 21 1 10.5513 -1.7247 -6.6741 22 1 8.2674 -2.5348 -6.7636 23 1 -0.3633 -1.0276 0.0042 24 1 -0.3633 0.5175 0.8879 25 1 -0.3633 0.5102 -0.8921 26 1 1.8926 -0.5119 0.8914 27 1 1.7671 1.9270 0.9391 28 1 1.5933 1.9881 -0.8335 29 1 5.1493 0.6727 1.1424 30 1 3.4937 0.3357 1.7311 31 1 5.1503 -1.3229 -0.0040 32 1 3.4950 -1.6620 0.5848 33 1 1.5946 -0.2812 -2.1373 34 1 1.7689 -1.7817 -1.1937 35 1 5.9169 0.7284 -1.0041 36 1 5.4677 2.1119 -2.0300 37 1 4.9990 0.5653 -3.9106 38 1 5.4480 -0.8182 -2.8847 39 1 7.7272 0.1220 -2.6161 40 1 7.2773 1.5052 -3.6420 41 1 10.5351 0.4279 -4.9792 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595858875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:51 Heat of formation + Delta-G solvation = -20.959173 kcal Electronic energy + Delta-G solvation = -17598.565717 eV Core-core repulsion = 15091.006085 eV Total energy + Delta-G solvation = -2507.559632 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74464 -35.33151 -33.55885 -31.93891 -31.15105 -29.82726 -27.72538 -25.71584 -24.15352 -22.90204 -21.29842 -20.66966 -19.34206 -18.40465 -16.50992 -15.96633 -15.75350 -14.46065 -14.36834 -13.91787 -13.68039 -13.47552 -13.39518 -12.59010 -12.44323 -12.23894 -12.06574 -11.82080 -11.62068 -11.43967 -11.31396 -10.96710 -10.83551 -10.55270 -10.49259 -10.43306 -10.22018 -10.07363 -10.05615 -9.51790 -9.27534 -8.99573 -8.30974 -8.12596 -5.96554 -3.98475 3.34257 3.40170 3.43775 4.16747 4.49231 4.71658 4.75704 4.90581 5.09378 5.11667 5.24324 5.29275 5.39269 5.50473 5.53654 5.62573 5.63396 5.75034 5.78370 5.87044 5.89949 5.99140 6.00764 6.06581 6.16489 6.19472 6.23763 6.30701 6.39896 6.43152 6.51871 6.78863 6.85659 7.11204 7.31223 7.51865 7.72272 7.87708 8.04195 8.47625 9.08775 9.65349 11.14940 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.045664 B = 0.004870 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.025596 B = 5748.437194 C = 5990.926748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.099 4.099 4 C 0.059 3.941 5 H 0.088 0.912 6 C -0.148 4.148 7 C -0.149 4.149 8 C 0.056 3.944 9 H 0.103 0.897 10 C -0.101 4.101 11 N -0.502 5.502 12 C 0.044 3.956 13 C -0.108 4.108 14 C 0.022 3.978 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.013 0.987 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 -0.341 11.452 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.137 4.137 4 C -0.050 4.050 5 H 0.106 0.894 6 C -0.187 4.187 7 C -0.188 4.188 8 C -0.053 4.053 9 H 0.121 0.879 10 C -0.139 4.139 11 N -0.224 5.224 12 C -0.083 4.083 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.748 -0.025 10.984 19.200 hybrid contribution 1.004 -0.869 -0.129 1.334 sum -14.743 -0.894 10.855 18.330 Atomic orbital electron populations 1.21831 0.95704 1.01305 1.01490 1.21252 0.94842 0.96362 0.98695 1.21719 0.94443 0.96329 1.01227 1.23048 0.95746 0.97831 0.88375 0.89399 1.22913 1.01025 0.95756 0.99032 1.22916 1.01463 0.97367 0.97049 1.23188 0.95441 0.90540 0.96090 0.87934 1.21744 0.94709 0.99333 0.98079 1.65483 1.21319 1.09923 1.25656 1.22361 0.86750 1.00968 0.98232 1.21716 1.00202 0.97703 0.94920 1.19064 0.89179 0.97065 0.96205 1.21258 0.95462 1.27538 1.11346 0.92735 1.25023 0.96533 0.95672 0.97258 1.69969 1.02880 1.40361 1.40422 0.86608 0.77476 0.80519 0.83488 1.20660 1.21271 1.19899 0.93019 0.93119 0.92696 0.91256 0.92322 0.91181 0.92035 0.91454 0.91720 0.91447 0.91176 0.92213 0.95065 0.91312 0.92717 0.93374 0.96884 0.96634 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.19 37.16 0.34 -0.97 16 2 C -0.09 -0.98 2.36 -90.48 -0.21 -1.19 16 3 C -0.10 -1.10 4.90 -26.29 -0.13 -1.23 16 4 C 0.06 0.77 3.68 -65.49 -0.24 0.53 16 5 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 6 C -0.15 -1.82 5.26 -25.21 -0.13 -1.95 16 7 C -0.15 -1.94 5.37 -25.21 -0.14 -2.07 16 8 C 0.06 0.80 3.41 -65.48 -0.22 0.58 16 9 H 0.10 1.63 5.73 -51.93 -0.30 1.33 16 10 C -0.10 -1.21 4.90 -26.27 -0.13 -1.34 16 11 N -0.50 -7.78 5.11 -212.95 -1.09 -8.87 16 12 C 0.04 0.81 4.92 -3.83 -0.02 0.79 16 13 C -0.11 -2.30 4.88 -26.74 -0.13 -2.43 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.72 5.52 -51.93 -0.29 0.44 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.79 7.95 -51.93 -0.41 0.37 16 30 H 0.07 0.72 7.04 -51.93 -0.37 0.35 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.77 7.04 -51.93 -0.37 0.41 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.57 6.89 -51.93 -0.36 0.21 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.00 6.04 -51.93 -0.31 0.69 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -29.83 305.75 -9.76 -39.59 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.43 Total: -3.06 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -1.56 Total: -22.57 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.35 Total: -35.53 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.83 -9.76 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595858875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.632 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds