Wall clock time and date at job start Sun Mar 29 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53137 * 109.38364 * 2 1 4 4 C 1.53705 * 108.89004 * 185.93046 * 3 2 1 5 5 H 1.09000 * 112.62108 * 188.04076 * 4 3 2 6 6 C 1.54613 * 107.81189 * 312.38177 * 4 3 2 7 7 C 1.54284 * 104.84133 * 88.55223 * 6 4 3 8 8 C 1.54611 * 104.84547 * 0.02562 * 7 6 4 9 9 H 1.08996 * 112.22063 * 146.85735 * 8 7 6 10 10 C 1.53133 * 109.42868 * 239.76635 * 2 1 3 11 11 N 1.48713 * 107.23872 * 64.08790 * 4 3 2 12 12 C 1.46901 * 111.00655 * 168.34809 * 11 4 3 13 13 C 1.52992 * 109.47859 * 170.00178 * 12 11 4 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47094 * 90.00289 * 19 17 15 21 21 H 1.48505 * 109.47195 * 210.00171 * 19 17 15 22 22 H 1.48493 * 109.47449 * 330.00136 * 19 17 15 23 23 H 1.08995 * 109.47208 * 180.23380 * 1 2 3 24 24 H 1.08999 * 109.46848 * 300.23685 * 1 2 3 25 25 H 1.08998 * 109.47167 * 60.23535 * 1 2 3 26 26 H 1.09001 * 109.42857 * 119.87008 * 2 1 3 27 27 H 1.09005 * 109.56867 * 66.10972 * 3 2 1 28 28 H 1.09001 * 109.56787 * 305.75752 * 3 2 1 29 29 H 1.08994 * 110.36416 * 207.39573 * 6 4 3 30 30 H 1.08998 * 110.36192 * 329.60038 * 6 4 3 31 31 H 1.08996 * 110.36565 * 118.84616 * 7 6 4 32 32 H 1.09001 * 110.36674 * 241.05577 * 7 6 4 33 33 H 1.09003 * 109.57129 * 54.22025 * 10 2 1 34 34 H 1.09004 * 109.66540 * 293.92111 * 10 2 1 35 35 H 1.09002 * 109.46980 * 49.99837 * 12 11 4 36 36 H 1.09001 * 109.46628 * 290.00259 * 12 11 4 37 37 H 1.09002 * 109.47103 * 59.99734 * 13 12 11 38 38 H 1.08998 * 109.46862 * 300.00546 * 13 12 11 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0383 1.4446 0.0000 4 6 3.5679 1.4339 -0.1503 5 1 4.0091 2.4218 -0.0179 6 6 4.1344 0.4017 0.8518 7 6 4.1350 -0.9361 0.0833 8 6 3.5695 -0.5906 -1.3136 9 1 4.0116 -1.2023 -2.1001 10 6 2.0394 -0.7272 -1.2477 11 7 3.8757 0.8544 -1.4848 12 6 5.2887 1.0549 -1.8329 13 6 5.6272 0.2388 -3.0819 14 6 7.0987 0.4482 -3.4447 15 6 7.4323 -0.3563 -4.6746 16 1 6.6708 -0.9565 -5.1502 17 6 8.7094 -0.3251 -5.1933 18 7 9.6365 0.4063 -4.6145 19 14 9.1226 -1.3217 -6.7182 20 1 8.8779 -0.4979 -7.9293 21 1 10.5513 -1.7247 -6.6741 22 1 8.2674 -2.5348 -6.7636 23 1 -0.3633 -1.0276 0.0042 24 1 -0.3633 0.5175 0.8879 25 1 -0.3633 0.5102 -0.8921 26 1 1.8926 -0.5119 0.8914 27 1 1.7671 1.9270 0.9391 28 1 1.5933 1.9881 -0.8335 29 1 5.1493 0.6727 1.1424 30 1 3.4937 0.3357 1.7311 31 1 5.1503 -1.3229 -0.0040 32 1 3.4950 -1.6620 0.5848 33 1 1.5946 -0.2812 -2.1373 34 1 1.7689 -1.7817 -1.1937 35 1 5.9169 0.7284 -1.0041 36 1 5.4677 2.1119 -2.0300 37 1 4.9990 0.5653 -3.9106 38 1 5.4480 -0.8182 -2.8847 39 1 7.7272 0.1220 -2.6161 40 1 7.2773 1.5052 -3.6420 41 1 10.5351 0.4279 -4.9792 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595858875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:51 Heat of formation + Delta-G solvation = -38.087466 kcal Electronic energy + Delta-G solvation = -17599.308455 eV Core-core repulsion = 15091.006085 eV Total energy + Delta-G solvation = -2508.302371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.82349 -36.76131 -35.24874 -33.61893 -32.18060 -31.32444 -28.89005 -27.36949 -25.14128 -24.56290 -22.72651 -21.86033 -20.71260 -19.45355 -18.52669 -17.24475 -16.98268 -16.46944 -15.73580 -15.05401 -14.98549 -14.62276 -14.31138 -14.24435 -13.66703 -13.60803 -13.34624 -13.29858 -12.89196 -12.72944 -12.68222 -12.42992 -12.30334 -12.20999 -11.87505 -11.57735 -11.46697 -11.38420 -11.24319 -11.13515 -10.99561 -10.82584 -10.55588 -9.37487 -8.21454 -6.32886 1.38751 1.40582 1.51704 2.39900 3.00749 3.11508 3.71727 3.76437 3.94636 4.12135 4.14513 4.22271 4.28775 4.36460 4.40106 4.49432 4.55600 4.68578 4.80276 4.83265 4.87621 4.93893 5.00348 5.02767 5.04689 5.08835 5.14298 5.19937 5.24859 5.31253 5.37776 5.40607 5.43308 5.50139 5.65259 5.72360 5.83241 6.05662 6.17360 6.28282 6.83508 7.36432 8.90640 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.045664 B = 0.004870 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.025596 B = 5748.437194 C = 5990.926748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.094 4.094 4 C 0.054 3.946 5 H 0.087 0.913 6 C -0.143 4.143 7 C -0.146 4.146 8 C 0.048 3.952 9 H 0.080 0.920 10 C -0.096 4.096 11 N -0.510 5.510 12 C 0.058 3.942 13 C -0.091 4.091 14 C 0.028 3.972 15 C -0.543 4.543 16 H 0.058 0.942 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.263 1.263 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.051 0.949 39 H -0.011 1.011 40 H -0.010 1.010 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.329 -1.172 12.011 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.132 4.132 4 C -0.055 4.055 5 H 0.105 0.895 6 C -0.182 4.182 7 C -0.185 4.185 8 C -0.060 4.060 9 H 0.098 0.902 10 C -0.134 4.134 11 N -0.233 5.233 12 C -0.070 4.070 13 C -0.129 4.129 14 C -0.010 4.010 15 C -0.581 4.581 16 H 0.076 0.924 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.187 1.187 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.007 0.993 40 H 0.008 0.992 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.480 -0.856 11.551 20.969 hybrid contribution 1.545 -0.587 -0.284 1.677 sum -15.935 -1.443 11.267 19.569 Atomic orbital electron populations 1.21786 0.94232 1.01987 1.01914 1.21238 0.95998 0.95596 0.97942 1.21711 0.92452 0.97018 1.02034 1.23197 0.97478 0.97828 0.86988 0.89520 1.22886 1.01013 0.94764 0.99520 1.22890 1.00663 0.98330 0.96593 1.23237 0.97295 0.89331 0.96161 0.90213 1.21723 0.92525 1.00470 0.98654 1.65496 1.18726 1.11212 1.27847 1.22059 0.88839 0.99711 0.96424 1.21453 0.96533 0.98579 0.96289 1.18952 0.92107 0.95035 0.94906 1.21672 0.96065 1.28085 1.12305 0.92370 1.25995 0.96290 0.96731 1.00782 1.70101 1.03405 1.41706 1.42206 0.85430 0.77470 0.79057 0.79002 1.19685 1.20558 1.18740 0.92258 0.91843 0.93154 0.90401 0.90071 0.92066 0.93024 0.88951 0.93719 0.89276 0.92276 0.90806 0.95654 0.91988 0.93294 0.93013 0.99300 0.99166 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.19 71.98 0.66 -1.42 16 2 C -0.09 -1.61 2.36 -10.70 -0.03 -1.63 16 3 C -0.09 -1.85 4.90 30.88 0.15 -1.70 16 4 C 0.05 1.32 3.68 45.35 0.17 1.49 16 5 H 0.09 2.15 8.10 -2.39 -0.02 2.13 16 6 C -0.14 -3.24 5.26 31.58 0.17 -3.08 16 7 C -0.15 -3.62 5.37 31.58 0.17 -3.45 16 8 C 0.05 1.35 3.41 45.37 0.15 1.50 16 9 H 0.08 2.57 5.73 -2.39 -0.01 2.56 16 10 C -0.10 -2.13 4.90 30.89 0.15 -1.98 16 11 N -0.51 -15.73 5.11 -827.63 -4.23 -19.96 16 12 C 0.06 2.16 4.92 86.30 0.42 2.58 16 13 C -0.09 -4.01 4.88 30.59 0.15 -3.86 16 14 C 0.03 1.53 4.97 29.85 0.15 1.67 16 15 C -0.54 -32.08 9.11 25.60 0.23 -31.85 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 18 N -0.93 -58.18 13.29 21.45 0.28 -57.90 16 19 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.08 1.31 5.52 -2.39 -0.01 1.29 16 27 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.27 7.95 -2.39 -0.02 1.25 16 30 H 0.09 1.65 7.04 -2.39 -0.02 1.64 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.81 7.04 -2.39 -0.02 1.80 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.03 0.96 6.89 -2.39 -0.02 0.94 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.05 2.23 6.04 -2.39 -0.01 2.21 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -64.73 305.75 2.06 -62.67 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.96 Total: 9.23 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 3.01 Total: -41.27 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -3.94 Total: -77.86 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.73 2.06 -62.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595858875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.578 kcal (2) G-P(sol) polarization free energy of solvation -64.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds