Wall clock time and date at job start Sun Mar 29 2020 21:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47354 * 2 1 4 4 C 1.46900 * 110.99677 * 287.97715 * 3 2 1 5 5 C 1.50706 * 109.46871 * 160.36316 * 4 3 2 6 6 H 1.08000 * 119.99677 * 4.91180 * 5 4 3 7 7 C 1.37872 * 120.00065 * 184.91355 * 5 4 3 8 8 N 1.31517 * 120.00111 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99888 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47690 * 89.99836 * 9 7 5 11 11 H 1.48504 * 109.47215 * 209.99947 * 9 7 5 12 12 H 1.48501 * 109.47125 * 329.99713 * 9 7 5 13 13 C 1.46905 * 110.99940 * 164.02809 * 3 2 1 14 14 C 1.50697 * 109.46709 * 293.95107 * 13 3 2 15 15 C 1.34667 * 126.59316 * 95.17097 * 14 13 3 16 16 N 1.34129 * 108.02319 * 180.27576 * 15 14 13 17 17 C 1.30493 * 109.25323 * 359.73408 * 16 15 14 18 18 C 1.50708 * 125.64692 * 179.97438 * 17 16 15 19 19 N 1.35040 * 108.70301 * 359.97438 * 17 16 15 20 20 C 1.46502 * 126.40026 * 180.02562 * 19 17 16 21 21 H 1.08999 * 109.46883 * 299.36119 * 1 2 3 22 22 H 1.08997 * 109.47121 * 59.36120 * 1 2 3 23 23 H 1.08996 * 109.47379 * 179.36232 * 1 2 3 24 24 H 1.09000 * 109.47245 * 239.99318 * 2 1 3 25 25 H 1.08998 * 109.47118 * 119.99905 * 2 1 3 26 26 H 1.08999 * 109.47343 * 280.36500 * 4 3 2 27 27 H 1.09000 * 109.46743 * 40.36769 * 4 3 2 28 28 H 0.97003 * 119.99471 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.46765 * 173.95492 * 13 3 2 30 30 H 1.08995 * 109.47206 * 53.95458 * 13 3 2 31 31 H 1.08003 * 125.98962 * 0.04532 * 15 14 13 32 32 H 1.08992 * 109.47040 * 270.03501 * 18 17 16 33 33 H 1.09001 * 109.46845 * 30.04640 * 18 17 16 34 34 H 1.09001 * 109.46520 * 150.04055 * 18 17 16 35 35 H 1.09001 * 109.47536 * 90.02321 * 20 19 17 36 36 H 1.08999 * 109.47161 * 210.02501 * 20 19 17 37 37 H 1.09002 * 109.47207 * 330.02269 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7961 2.0223 -1.3045 5 6 1.8475 3.5203 -1.1471 6 1 2.1064 3.9543 -0.1926 7 6 1.5640 4.3365 -2.2214 8 7 1.6083 5.6437 -2.0839 9 14 1.1154 3.5857 -3.8720 10 1 -0.3554 3.3953 -3.9461 11 1 1.5527 4.4926 -4.9637 12 1 1.7925 2.2721 -4.0187 13 6 3.4383 1.4417 0.3774 14 6 3.5943 1.0063 1.8116 15 6 3.9004 -0.2310 2.2462 16 7 3.9379 -0.2026 3.5867 17 6 3.6722 1.0067 3.9990 18 6 3.6162 1.4515 5.4379 19 7 3.4558 1.7933 2.9230 20 6 3.1275 3.2210 2.9417 21 1 -0.3633 0.5039 0.8957 22 1 -0.3633 0.5237 -0.8842 23 1 -0.3634 -1.0275 -0.0114 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.5705 1.7035 -2.0022 27 1 0.8186 1.7307 -1.6885 28 1 1.4092 6.2179 -2.8400 29 1 3.8033 2.4628 0.2659 30 1 4.0130 0.7779 -0.2685 31 1 4.0802 -1.0956 1.6245 32 1 2.6021 1.3272 5.8174 33 1 4.3030 0.8483 6.0316 34 1 3.9032 2.5009 5.5050 35 1 4.0469 3.8057 2.9132 36 1 2.5151 3.4644 2.0735 37 1 2.5761 3.4551 3.8524 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596982412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:41 Heat of formation + Delta-G solvation = 60.281017 kcal Electronic energy + Delta-G solvation = -17311.413632 eV Core-core repulsion = 14703.836496 eV Total energy + Delta-G solvation = -2607.577136 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.81380 -37.10756 -33.66685 -32.68475 -31.96255 -30.31334 -28.73916 -26.74912 -26.20032 -24.03136 -22.36166 -20.46431 -20.01789 -19.06795 -16.96126 -16.32171 -15.75882 -14.83222 -14.79750 -14.15662 -13.73284 -13.50706 -13.39098 -13.13304 -12.80810 -12.51212 -12.41521 -12.19019 -12.10003 -11.90860 -11.59158 -11.33073 -11.06450 -10.86416 -10.52245 -10.19357 -9.91237 -9.57325 -9.39416 -9.19399 -8.62637 -7.88302 -7.43020 -6.12664 -4.09622 2.34552 3.14454 3.23672 3.31779 3.33725 3.40629 4.36160 4.69211 4.79938 5.00351 5.14255 5.21414 5.37408 5.46445 5.56280 5.60635 5.64293 5.69279 5.84340 5.87772 5.93476 6.02049 6.17854 6.19793 6.31931 6.46863 6.67046 6.73119 6.82518 6.90071 7.09069 7.53140 7.56698 7.85453 7.95210 8.40357 8.58605 8.93212 9.49795 11.00328 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030054 B = 0.007023 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.443908 B = 3986.168988 C = 4529.786123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 N -0.524 5.524 4 C 0.160 3.840 5 C -0.507 4.507 6 H 0.077 0.923 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.130 3.870 14 C 0.009 3.991 15 C -0.040 4.040 16 N -0.496 5.496 17 C 0.186 3.814 18 C -0.062 4.062 19 N -0.440 5.440 20 C 0.067 3.933 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.022 0.978 25 H 0.069 0.931 26 H -0.010 1.010 27 H 0.029 0.971 28 H 0.264 0.736 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.162 0.838 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -7.373 8.941 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 N -0.248 5.248 4 C 0.034 3.966 5 C -0.545 4.545 6 H 0.095 0.905 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.001 3.999 14 C -0.108 4.108 15 C -0.189 4.189 16 N -0.215 5.215 17 C -0.076 4.076 18 C -0.121 4.121 19 N -0.122 5.122 20 C -0.075 4.075 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.087 0.913 26 H 0.007 0.993 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.179 0.821 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.364 -7.431 9.691 12.439 hybrid contribution -0.061 0.025 -2.195 2.196 sum 2.303 -7.406 7.496 10.787 Atomic orbital electron populations 1.21724 0.95553 1.00081 1.02589 1.22103 0.95948 0.90514 0.99803 1.61984 1.15084 1.14934 1.32830 1.20240 0.95589 0.95885 0.84880 1.20980 1.46849 0.88197 0.98511 0.90460 1.24881 0.95087 0.94707 0.98576 1.69883 1.49683 1.02848 1.31494 0.86884 0.79250 0.79500 0.84270 1.20144 1.21194 1.19283 1.20387 0.90495 1.02094 0.86881 1.21347 1.07697 0.91784 0.89933 1.21917 1.09590 0.96218 0.91128 1.70125 1.20960 1.18900 1.11534 1.23076 1.06277 0.87031 0.91193 1.20087 1.03338 1.01275 0.87377 1.45060 1.51009 1.10045 1.06080 1.22137 1.02324 0.77446 1.05591 0.92408 0.92493 0.93429 0.95934 0.91264 0.99278 0.95267 0.92638 0.88965 0.93544 0.82071 0.90623 0.89685 0.91140 0.90927 0.87443 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.99 37.16 0.37 -1.98 16 2 C 0.04 0.79 5.55 -3.82 -0.02 0.76 16 3 N -0.52 -10.58 4.37 -237.51 -1.04 -11.62 16 4 C 0.16 3.72 3.65 -4.97 -0.02 3.70 16 5 C -0.51 -13.65 9.17 -34.44 -0.32 -13.97 16 6 H 0.08 2.22 7.72 -52.49 -0.41 1.82 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -26.57 13.96 55.43 0.77 -25.79 16 9 Si 0.87 20.95 27.37 -169.99 -4.65 16.30 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.22 6.69 56.52 0.38 -5.84 16 13 C 0.13 2.42 4.85 -4.97 -0.02 2.39 16 14 C 0.01 0.15 5.74 -81.60 -0.47 -0.31 16 15 C -0.04 -0.68 10.40 -17.81 -0.19 -0.87 16 16 N -0.50 -8.68 11.25 -10.81 -0.12 -8.80 16 17 C 0.19 2.89 7.90 -155.42 -1.23 1.66 16 18 C -0.06 -0.67 9.98 36.01 0.36 -0.31 16 19 N -0.44 -7.09 3.15 -116.68 -0.37 -7.46 16 20 C 0.07 0.94 10.56 59.85 0.63 1.57 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 22 H 0.06 1.01 6.52 -51.93 -0.34 0.67 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.02 0.38 8.05 -51.93 -0.42 -0.03 16 25 H 0.07 1.18 5.85 -51.93 -0.30 0.87 16 26 H -0.01 -0.25 7.40 -51.93 -0.38 -0.63 16 27 H 0.03 0.69 5.40 -51.93 -0.28 0.41 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.09 1.85 7.25 -51.93 -0.38 1.48 16 30 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.16 2.43 8.06 -52.48 -0.42 2.01 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.62 7.70 -51.93 -0.40 0.22 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.11 1.81 7.71 -51.93 -0.40 1.41 16 37 H 0.08 0.90 7.65 -51.93 -0.40 0.50 16 LS Contribution 300.71 15.07 4.53 4.53 Total: -1.00 -30.97 300.71 -7.69 -38.66 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.82 Total: -0.30 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.00 Total: -5.52 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.75 Total: -53.67 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.65 Total: 16.30 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.97 -7.69 -38.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596982412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.942 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds