Wall clock time and date at job start Sun Mar 29 2020 21:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47354 * 2 1 4 4 C 1.46900 * 110.99677 * 287.97715 * 3 2 1 5 5 C 1.50706 * 109.46871 * 160.36316 * 4 3 2 6 6 H 1.08000 * 119.99677 * 4.91180 * 5 4 3 7 7 C 1.37872 * 120.00065 * 184.91355 * 5 4 3 8 8 N 1.31517 * 120.00111 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99888 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47690 * 89.99836 * 9 7 5 11 11 H 1.48504 * 109.47215 * 209.99947 * 9 7 5 12 12 H 1.48501 * 109.47125 * 329.99713 * 9 7 5 13 13 C 1.46905 * 110.99940 * 164.02809 * 3 2 1 14 14 C 1.50697 * 109.46709 * 293.95107 * 13 3 2 15 15 C 1.34667 * 126.59316 * 95.17097 * 14 13 3 16 16 N 1.34129 * 108.02319 * 180.27576 * 15 14 13 17 17 C 1.30493 * 109.25323 * 359.73408 * 16 15 14 18 18 C 1.50708 * 125.64692 * 179.97438 * 17 16 15 19 19 N 1.35040 * 108.70301 * 359.97438 * 17 16 15 20 20 C 1.46502 * 126.40026 * 180.02562 * 19 17 16 21 21 H 1.08999 * 109.46883 * 299.36119 * 1 2 3 22 22 H 1.08997 * 109.47121 * 59.36120 * 1 2 3 23 23 H 1.08996 * 109.47379 * 179.36232 * 1 2 3 24 24 H 1.09000 * 109.47245 * 239.99318 * 2 1 3 25 25 H 1.08998 * 109.47118 * 119.99905 * 2 1 3 26 26 H 1.08999 * 109.47343 * 280.36500 * 4 3 2 27 27 H 1.09000 * 109.46743 * 40.36769 * 4 3 2 28 28 H 0.97003 * 119.99471 * 179.97438 * 8 7 5 29 29 H 1.09003 * 109.46765 * 173.95492 * 13 3 2 30 30 H 1.08995 * 109.47206 * 53.95458 * 13 3 2 31 31 H 1.08003 * 125.98962 * 0.04532 * 15 14 13 32 32 H 1.08992 * 109.47040 * 270.03501 * 18 17 16 33 33 H 1.09001 * 109.46845 * 30.04640 * 18 17 16 34 34 H 1.09001 * 109.46520 * 150.04055 * 18 17 16 35 35 H 1.09001 * 109.47536 * 90.02321 * 20 19 17 36 36 H 1.08999 * 109.47161 * 210.02501 * 20 19 17 37 37 H 1.09002 * 109.47207 * 330.02269 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7961 2.0223 -1.3045 5 6 1.8475 3.5203 -1.1471 6 1 2.1064 3.9543 -0.1926 7 6 1.5640 4.3365 -2.2214 8 7 1.6083 5.6437 -2.0839 9 14 1.1154 3.5857 -3.8720 10 1 -0.3554 3.3953 -3.9461 11 1 1.5527 4.4926 -4.9637 12 1 1.7925 2.2721 -4.0187 13 6 3.4383 1.4417 0.3774 14 6 3.5943 1.0063 1.8116 15 6 3.9004 -0.2310 2.2462 16 7 3.9379 -0.2026 3.5867 17 6 3.6722 1.0067 3.9990 18 6 3.6162 1.4515 5.4379 19 7 3.4558 1.7933 2.9230 20 6 3.1275 3.2210 2.9417 21 1 -0.3633 0.5039 0.8957 22 1 -0.3633 0.5237 -0.8842 23 1 -0.3634 -1.0275 -0.0114 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.5705 1.7035 -2.0022 27 1 0.8186 1.7307 -1.6885 28 1 1.4092 6.2179 -2.8400 29 1 3.8033 2.4628 0.2659 30 1 4.0130 0.7779 -0.2685 31 1 4.0802 -1.0956 1.6245 32 1 2.6021 1.3272 5.8174 33 1 4.3030 0.8483 6.0316 34 1 3.9032 2.5009 5.5050 35 1 4.0469 3.8057 2.9132 36 1 2.5151 3.4644 2.0735 37 1 2.5761 3.4551 3.8524 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596982412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:41 Heat of formation + Delta-G solvation = 40.246576 kcal Electronic energy + Delta-G solvation = -17312.282391 eV Core-core repulsion = 14703.836496 eV Total energy + Delta-G solvation = -2608.445895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.06822 -38.68836 -34.90073 -34.73915 -33.18400 -31.77055 -30.28526 -28.12209 -27.55088 -25.42416 -24.12047 -21.79583 -21.51098 -20.36042 -19.01147 -17.58899 -17.13398 -16.49526 -16.25392 -15.74962 -15.34079 -14.85418 -14.72789 -14.48734 -14.11335 -14.05579 -13.62799 -13.48854 -13.21269 -13.15230 -13.02242 -12.93214 -12.55989 -12.51977 -12.20245 -11.91976 -11.61165 -11.47057 -10.89383 -10.75490 -10.45192 -9.21135 -8.98227 -8.27042 -6.28534 1.07464 1.35066 1.36665 1.46286 1.95277 2.13617 2.34867 3.06160 3.29880 3.63744 3.78184 3.98146 4.19507 4.21775 4.33371 4.38952 4.46636 4.57491 4.64835 4.69099 4.75477 4.78416 4.82774 4.90824 4.99810 5.03874 5.09109 5.16771 5.31311 5.52728 5.58667 5.80677 6.01214 6.32345 6.36543 6.64449 6.76196 7.14896 7.34654 8.88934 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030054 B = 0.007023 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.443908 B = 3986.168988 C = 4529.786123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.046 3.954 3 N -0.536 5.536 4 C 0.170 3.830 5 C -0.508 4.508 6 H 0.043 0.957 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.938 3.062 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.253 1.253 13 C 0.140 3.860 14 C -0.013 4.013 15 C -0.040 4.040 16 N -0.524 5.524 17 C 0.192 3.808 18 C -0.062 4.062 19 N -0.447 5.447 20 C 0.071 3.929 21 H 0.046 0.954 22 H 0.043 0.957 23 H 0.077 0.923 24 H 0.033 0.967 25 H 0.077 0.923 26 H -0.012 1.012 27 H 0.033 0.967 28 H 0.265 0.735 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.176 0.824 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 -8.946 9.408 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 N -0.261 5.261 4 C 0.044 3.956 5 C -0.546 4.546 6 H 0.062 0.938 7 C -0.185 4.185 8 N -0.586 5.586 9 Si 0.763 3.237 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.177 1.177 13 C 0.011 3.989 14 C -0.129 4.129 15 C -0.188 4.188 16 N -0.244 5.244 17 C -0.070 4.070 18 C -0.121 4.121 19 N -0.129 5.129 20 C -0.071 4.071 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.096 0.904 24 H 0.051 0.949 25 H 0.095 0.905 26 H 0.006 0.994 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.193 0.807 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.146 -9.022 10.169 13.762 hybrid contribution 0.042 0.529 -2.196 2.259 sum 2.188 -8.493 7.973 11.853 Atomic orbital electron populations 1.21706 0.94740 1.01732 1.01372 1.22163 0.96572 0.88863 1.00601 1.61887 1.16382 1.16807 1.31008 1.19992 0.95548 0.93616 0.86478 1.21217 1.45773 0.90447 0.97155 0.93836 1.25724 0.95222 0.95006 1.02578 1.70026 1.51423 1.04426 1.32765 0.85845 0.79365 0.79183 0.79353 1.19265 1.20977 1.17666 1.20200 0.89633 1.00785 0.88264 1.21176 1.09663 0.92456 0.89652 1.22188 1.08738 0.96440 0.91420 1.70171 1.22546 1.20077 1.11621 1.23998 1.03898 0.86392 0.92724 1.20316 1.04642 1.02755 0.84342 1.45251 1.50974 1.10667 1.06051 1.22158 1.02758 0.76759 1.05429 0.93458 0.93785 0.90367 0.94908 0.90494 0.99393 0.94951 0.92567 0.91588 0.92562 0.80662 0.89141 0.88612 0.88925 0.89646 0.91047 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.99 71.98 0.72 -3.60 16 2 C 0.05 1.53 5.55 86.30 0.48 2.01 16 3 N -0.54 -21.57 4.37 -905.35 -3.96 -25.53 16 4 C 0.17 7.88 3.65 85.56 0.31 8.19 16 5 C -0.51 -28.00 9.17 25.60 0.23 -27.77 16 6 H 0.04 2.63 7.72 -2.91 -0.02 2.61 16 7 C 0.01 0.68 5.47 84.65 0.46 1.15 16 8 N -0.95 -57.22 13.96 21.45 0.30 -56.92 16 9 Si 0.94 43.00 27.37 68.60 1.88 44.87 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.25 -10.87 6.69 99.48 0.67 -10.21 16 13 C 0.14 5.23 4.85 85.56 0.41 5.64 16 14 C -0.01 -0.46 5.74 40.95 0.24 -0.22 16 15 C -0.04 -1.30 10.40 83.52 0.87 -0.43 16 16 N -0.52 -17.55 11.25 -188.13 -2.12 -19.67 16 17 C 0.19 5.61 7.90 138.13 1.09 6.70 16 18 C -0.06 -1.15 9.98 71.24 0.71 -0.44 16 19 N -0.45 -14.06 3.15 -523.05 -1.65 -15.70 16 20 C 0.07 1.95 10.56 127.77 1.35 3.30 16 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.04 1.48 6.52 -2.39 -0.02 1.46 16 23 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.03 1.04 8.05 -2.39 -0.02 1.02 16 25 H 0.08 2.48 5.85 -2.39 -0.01 2.47 16 26 H -0.01 -0.54 7.40 -2.39 -0.02 -0.56 16 27 H 0.03 1.49 5.40 -2.39 -0.01 1.47 16 28 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.07 2.77 7.25 -2.39 -0.02 2.75 16 30 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 31 H 0.18 5.02 8.06 -2.91 -0.02 5.00 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.30 7.70 -2.39 -0.02 1.29 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 2.52 7.71 -2.39 -0.02 2.50 16 37 H 0.11 2.30 7.65 -2.39 -0.02 2.29 16 Total: -1.00 -67.13 300.71 2.33 -64.80 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.99 Total: 13.61 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 6.88 Total: -5.47 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -7.42 Total: -117.82 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.87 kcal Total: -67.13 2.33 -64.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596982412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.051 kcal (2) G-P(sol) polarization free energy of solvation -67.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds