Wall clock time and date at job start Sun Mar 29 2020 21:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47605 * 2 1 4 4 N 1.46507 * 109.47378 * 119.99924 * 2 1 3 5 5 C 1.36878 * 126.39829 * 300.02953 * 4 2 1 6 6 C 1.34666 * 106.81597 * 180.23772 * 5 4 2 7 7 N 1.34129 * 108.02165 * 359.60606 * 6 5 4 8 8 C 1.30498 * 109.25671 * 0.40230 * 7 6 5 9 9 C 1.50696 * 125.65039 * 179.73373 * 8 7 6 10 10 N 1.46904 * 109.47078 * 270.02096 * 9 8 7 11 11 C 1.46903 * 110.99805 * 179.97438 * 10 9 8 12 12 H 1.08994 * 109.47347 * 324.99703 * 11 10 9 13 13 C 1.52995 * 109.46667 * 85.00355 * 11 10 9 14 14 C 1.50703 * 109.46720 * 204.99870 * 11 10 9 15 15 H 1.07994 * 120.00430 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99561 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99797 * 180.02562 * 16 14 11 18 18 Si 1.86795 * 120.00337 * 0.02562 * 16 14 11 19 19 H 1.48510 * 109.46931 * 89.99482 * 18 16 14 20 20 H 1.48495 * 109.47525 * 209.99717 * 18 16 14 21 21 H 1.48502 * 109.47213 * 329.99825 * 18 16 14 22 22 H 1.09005 * 109.47113 * 300.00248 * 1 2 3 23 23 H 1.09001 * 109.47168 * 59.99730 * 1 2 3 24 24 H 1.09001 * 109.47445 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47113 * 239.99752 * 2 1 3 26 26 H 1.08998 * 109.47764 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47078 * 300.00325 * 3 2 1 28 28 H 1.09005 * 109.47088 * 59.99736 * 3 2 1 29 29 H 1.08002 * 126.58785 * 359.96564 * 5 4 2 30 30 H 1.08003 * 125.98708 * 179.75770 * 6 5 4 31 31 H 1.09001 * 109.47579 * 30.02373 * 9 8 7 32 32 H 1.09000 * 109.47253 * 150.02525 * 9 8 7 33 33 H 1.00901 * 111.00215 * 303.95930 * 10 9 8 34 34 H 1.09004 * 109.47028 * 179.97438 * 13 11 10 35 35 H 1.08993 * 109.47708 * 299.99414 * 13 11 10 36 36 H 1.08996 * 109.47562 * 60.00357 * 13 11 10 37 37 H 0.96998 * 120.00304 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7693 -0.3393 2.4955 6 6 2.4096 -1.2351 3.2708 7 7 3.0255 -2.1145 2.4669 8 6 2.7982 -1.7928 1.2228 9 6 3.3200 -2.5290 0.0159 10 7 4.6201 -1.9682 -0.3755 11 6 5.1608 -2.6633 -1.5513 12 1 4.8881 -3.7177 -1.5073 13 6 4.5828 -2.0394 -2.8230 14 6 6.6622 -2.5330 -1.5654 15 1 7.1644 -1.9887 -0.7795 16 6 7.3946 -3.1097 -2.5813 17 7 8.7048 -2.9964 -2.5934 18 14 6.5260 -4.0518 -3.9405 19 1 6.1869 -3.1226 -5.0482 20 1 7.4195 -5.1233 -4.4491 21 1 5.2809 -4.6584 -3.4046 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.1771 0.4981 2.8337 30 1 2.4226 -1.2451 4.3507 31 1 3.4378 -3.5854 0.2574 32 1 2.6149 -2.4212 -0.8084 33 1 4.5503 -0.9755 -0.5423 34 1 4.9843 -2.5549 -3.6955 35 1 3.4970 -2.1336 -2.8129 36 1 4.8557 -0.9851 -2.8670 37 1 9.2201 -3.4024 -3.3079 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597082468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:45 Heat of formation + Delta-G solvation = 64.738945 kcal Electronic energy + Delta-G solvation = -17166.661452 eV Core-core repulsion = 14559.277626 eV Total energy + Delta-G solvation = -2607.383826 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.95521 -36.41621 -36.04485 -32.66914 -30.79592 -30.63849 -28.34669 -27.59129 -25.27133 -24.45652 -22.84091 -20.76297 -20.25952 -19.27312 -17.23638 -16.53755 -15.43928 -14.99259 -14.94726 -14.52278 -13.98943 -13.82864 -13.69904 -13.12676 -12.84685 -12.66929 -12.58463 -12.38924 -12.24243 -11.94970 -11.65628 -11.47288 -11.35029 -11.02831 -10.52242 -10.15442 -9.64171 -9.55611 -9.41042 -9.18856 -8.56903 -8.18440 -7.48536 -6.03221 -4.00859 2.21832 2.84128 3.24147 3.34417 3.38243 3.41851 4.34277 4.40267 4.63233 4.68592 4.74900 4.89703 5.17827 5.21102 5.26535 5.31239 5.41287 5.47745 5.52489 5.62619 5.71338 5.87968 5.91909 6.06779 6.11064 6.24174 6.42268 6.50157 6.66397 6.97774 7.04344 7.37113 7.67312 7.85327 8.20949 8.42797 8.68853 9.09491 9.58393 11.10410 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032661 B = 0.006258 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.091186 B = 4473.184747 C = 4837.596380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 C -0.161 4.161 4 N -0.451 5.451 5 C -0.064 4.064 6 C -0.031 4.031 7 N -0.477 5.477 8 C 0.225 3.775 9 C 0.140 3.860 10 N -0.660 5.660 11 C 0.184 3.816 12 H 0.038 0.962 13 C -0.184 4.184 14 C -0.497 4.497 15 H 0.083 0.917 16 C 0.067 3.933 17 N -0.900 5.900 18 Si 0.885 3.115 19 H -0.281 1.281 20 H -0.296 1.296 21 H -0.269 1.269 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.098 0.902 32 H 0.032 0.968 33 H 0.328 0.672 34 H 0.048 0.952 35 H 0.025 0.975 36 H 0.054 0.946 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.314 7.620 3.798 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 C -0.219 4.219 4 N -0.135 5.135 5 C -0.197 4.197 6 C -0.180 4.180 7 N -0.195 5.195 8 C -0.038 4.038 9 C 0.009 3.991 10 N -0.290 5.290 11 C 0.075 3.925 12 H 0.056 0.944 13 C -0.243 4.243 14 C -0.536 4.536 15 H 0.101 0.899 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.716 3.284 19 H -0.209 1.209 20 H -0.223 1.223 21 H -0.194 1.194 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.183 0.817 30 H 0.182 0.818 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.146 0.854 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.369 6.580 4.293 19.064 hybrid contribution -1.465 0.689 -1.758 2.390 sum -18.834 7.270 2.535 20.347 Atomic orbital electron populations 1.22145 0.93454 1.03063 1.03074 1.21466 0.95312 0.94349 0.86966 1.22158 1.02773 0.94042 1.02949 1.45626 1.38668 1.22825 1.06368 1.22434 1.09220 1.04708 0.83356 1.22267 1.01251 0.94947 0.99505 1.70290 1.22210 1.27353 0.99618 1.23374 0.96021 0.88843 0.95581 1.20305 0.91075 0.98884 0.88805 1.60575 1.21310 1.06979 1.40178 1.19687 0.96185 0.93641 0.82990 0.94433 1.22887 0.97534 1.01949 1.01893 1.20953 0.88245 1.34350 1.10030 0.89939 1.24938 0.94740 0.95975 0.97742 1.69880 1.05191 1.45298 1.33483 0.86906 0.79285 0.79576 0.82634 1.20850 1.22333 1.19414 0.91776 0.90623 0.91829 0.88115 0.91195 0.90625 0.91840 0.81673 0.81788 0.88365 0.95059 0.85446 0.93377 0.95644 0.92691 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.25 37.15 0.34 -0.93 16 2 C 0.12 1.26 3.52 -67.93 -0.24 1.02 16 3 C -0.16 -1.45 9.25 37.15 0.34 -1.11 16 4 N -0.45 -6.06 2.61 -106.83 -0.28 -6.34 16 5 C -0.06 -0.81 10.60 -16.56 -0.18 -0.99 16 6 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 7 N -0.48 -8.85 11.25 -10.82 -0.12 -8.97 16 8 C 0.22 3.82 7.42 -155.42 -1.15 2.66 16 9 C 0.14 2.47 5.62 -4.98 -0.03 2.44 16 10 N -0.66 -13.67 6.22 -109.22 -0.68 -14.35 16 11 C 0.18 4.28 2.17 -68.86 -0.15 4.13 16 12 H 0.04 0.91 6.86 -51.93 -0.36 0.55 16 13 C -0.18 -3.78 8.64 37.16 0.32 -3.46 16 14 C -0.50 -14.11 9.42 -34.44 -0.32 -14.44 16 15 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 16 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 17 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 18 Si 0.89 21.73 24.37 -169.99 -4.14 17.59 16 19 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 20 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 22 H 0.06 0.47 7.95 -51.93 -0.41 0.06 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.10 1.10 6.67 -51.93 -0.35 0.75 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.52 7.95 -51.93 -0.41 0.11 16 29 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 31 H 0.10 1.81 8.05 -51.93 -0.42 1.40 16 32 H 0.03 0.48 6.37 -51.93 -0.33 0.15 16 33 H 0.33 6.39 8.47 -39.29 -0.33 6.06 16 34 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 35 H 0.02 0.43 7.45 -51.93 -0.39 0.04 16 36 H 0.05 1.09 8.13 -51.93 -0.42 0.66 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -32.72 298.35 -7.05 -39.77 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.73 Total: 4.27 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -1.37 Total: -9.49 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.31 Total: -56.63 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.72 -7.05 -39.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597082468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.509 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds