Wall clock time and date at job start Sun Mar 29 2020 21:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47605 * 2 1 4 4 N 1.46507 * 109.47378 * 119.99924 * 2 1 3 5 5 C 1.36878 * 126.39829 * 300.02953 * 4 2 1 6 6 C 1.34666 * 106.81597 * 180.23772 * 5 4 2 7 7 N 1.34129 * 108.02165 * 359.60606 * 6 5 4 8 8 C 1.30498 * 109.25671 * 0.40230 * 7 6 5 9 9 C 1.50696 * 125.65039 * 179.73373 * 8 7 6 10 10 N 1.46904 * 109.47078 * 270.02096 * 9 8 7 11 11 C 1.46903 * 110.99805 * 179.97438 * 10 9 8 12 12 H 1.08994 * 109.47347 * 324.99703 * 11 10 9 13 13 C 1.52995 * 109.46667 * 85.00355 * 11 10 9 14 14 C 1.50703 * 109.46720 * 204.99870 * 11 10 9 15 15 H 1.07994 * 120.00430 * 0.02562 * 14 11 10 16 16 C 1.37880 * 119.99561 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99797 * 180.02562 * 16 14 11 18 18 Si 1.86795 * 120.00337 * 0.02562 * 16 14 11 19 19 H 1.48510 * 109.46931 * 89.99482 * 18 16 14 20 20 H 1.48495 * 109.47525 * 209.99717 * 18 16 14 21 21 H 1.48502 * 109.47213 * 329.99825 * 18 16 14 22 22 H 1.09005 * 109.47113 * 300.00248 * 1 2 3 23 23 H 1.09001 * 109.47168 * 59.99730 * 1 2 3 24 24 H 1.09001 * 109.47445 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47113 * 239.99752 * 2 1 3 26 26 H 1.08998 * 109.47764 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47078 * 300.00325 * 3 2 1 28 28 H 1.09005 * 109.47088 * 59.99736 * 3 2 1 29 29 H 1.08002 * 126.58785 * 359.96564 * 5 4 2 30 30 H 1.08003 * 125.98708 * 179.75770 * 6 5 4 31 31 H 1.09001 * 109.47579 * 30.02373 * 9 8 7 32 32 H 1.09000 * 109.47253 * 150.02525 * 9 8 7 33 33 H 1.00901 * 111.00215 * 303.95930 * 10 9 8 34 34 H 1.09004 * 109.47028 * 179.97438 * 13 11 10 35 35 H 1.08993 * 109.47708 * 299.99414 * 13 11 10 36 36 H 1.08996 * 109.47562 * 60.00357 * 13 11 10 37 37 H 0.96998 * 120.00304 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7693 -0.3393 2.4955 6 6 2.4096 -1.2351 3.2708 7 7 3.0255 -2.1145 2.4669 8 6 2.7982 -1.7928 1.2228 9 6 3.3200 -2.5290 0.0159 10 7 4.6201 -1.9682 -0.3755 11 6 5.1608 -2.6633 -1.5513 12 1 4.8881 -3.7177 -1.5073 13 6 4.5828 -2.0394 -2.8230 14 6 6.6622 -2.5330 -1.5654 15 1 7.1644 -1.9887 -0.7795 16 6 7.3946 -3.1097 -2.5813 17 7 8.7048 -2.9964 -2.5934 18 14 6.5260 -4.0518 -3.9405 19 1 6.1869 -3.1226 -5.0482 20 1 7.4195 -5.1233 -4.4491 21 1 5.2809 -4.6584 -3.4046 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.1771 0.4981 2.8337 30 1 2.4226 -1.2451 4.3507 31 1 3.4378 -3.5854 0.2574 32 1 2.6149 -2.4212 -0.8084 33 1 4.5503 -0.9755 -0.5423 34 1 4.9843 -2.5549 -3.6955 35 1 3.4970 -2.1336 -2.8129 36 1 4.8557 -0.9851 -2.8670 37 1 9.2201 -3.4024 -3.3079 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597082468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:45 Heat of formation + Delta-G solvation = 41.218300 kcal Electronic energy + Delta-G solvation = -17167.681384 eV Core-core repulsion = 14559.277626 eV Total energy + Delta-G solvation = -2608.403758 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.05440 -38.10161 -36.92492 -34.66773 -32.45144 -31.63354 -29.74116 -28.22228 -27.16735 -25.99496 -23.76240 -22.16843 -21.81957 -20.37565 -18.83516 -18.00891 -16.95584 -16.57803 -16.11833 -15.67179 -15.40042 -14.99629 -14.76850 -14.60445 -14.28972 -14.03853 -13.82156 -13.56715 -13.22049 -13.14216 -12.99914 -12.81556 -12.46043 -12.38641 -12.06166 -11.98239 -11.48183 -11.23502 -10.81805 -10.74901 -10.50763 -9.34002 -9.05950 -8.25950 -6.29526 1.12489 1.30241 1.37924 1.47873 1.86921 2.22370 2.33568 3.07857 3.40596 3.59169 3.65783 3.88559 3.95455 4.07765 4.29754 4.41073 4.50125 4.55945 4.62075 4.64686 4.66935 4.68858 4.79247 4.87196 4.90697 4.97294 5.11793 5.21806 5.36575 5.46077 5.65332 5.91489 5.95345 6.31428 6.61550 6.65012 6.77544 7.28099 7.35045 8.91908 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032661 B = 0.006258 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.091186 B = 4473.184747 C = 4837.596380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.114 3.886 3 C -0.157 4.157 4 N -0.442 5.442 5 C -0.039 4.039 6 C -0.062 4.062 7 N -0.524 5.524 8 C 0.196 3.804 9 C 0.149 3.851 10 N -0.678 5.678 11 C 0.189 3.811 12 H 0.033 0.967 13 C -0.176 4.176 14 C -0.507 4.507 15 H 0.028 0.972 16 C 0.006 3.994 17 N -0.953 5.953 18 Si 0.956 3.044 19 H -0.262 1.262 20 H -0.300 1.300 21 H -0.246 1.246 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.208 0.792 30 H 0.182 0.818 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.334 0.666 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.818 8.629 2.692 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.012 3.988 3 C -0.215 4.215 4 N -0.126 5.126 5 C -0.173 4.173 6 C -0.210 4.210 7 N -0.244 5.244 8 C -0.067 4.067 9 C 0.018 3.982 10 N -0.310 5.310 11 C 0.080 3.920 12 H 0.050 0.950 13 C -0.235 4.235 14 C -0.545 4.545 15 H 0.047 0.953 16 C -0.190 4.190 17 N -0.594 5.594 18 Si 0.783 3.217 19 H -0.188 1.188 20 H -0.228 1.228 21 H -0.170 1.170 22 H 0.092 0.908 23 H 0.117 0.883 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.224 0.776 30 H 0.200 0.800 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.910 7.613 3.184 22.479 hybrid contribution -0.365 0.477 -1.252 1.389 sum -21.275 8.090 1.932 22.843 Atomic orbital electron populations 1.22118 0.91150 1.02977 1.04743 1.21795 0.97047 0.94561 0.85419 1.22149 1.01173 0.93427 1.04733 1.45819 1.37327 1.21680 1.07735 1.23035 1.07402 1.04337 0.82532 1.22725 1.02245 0.95443 1.00604 1.70181 1.23732 1.29440 1.01009 1.23067 0.98064 0.90720 0.94857 1.20155 0.90004 0.97883 0.90148 1.60343 1.23967 1.07295 1.39361 1.19437 0.93012 0.93961 0.85620 0.94957 1.22705 0.99980 1.01582 0.99196 1.21244 0.91448 1.33380 1.08466 0.95313 1.25875 0.95319 0.97082 1.00737 1.70060 1.07322 1.47100 1.34898 0.85757 0.78586 0.78080 0.79313 1.18771 1.22828 1.17008 0.90754 0.88344 0.92765 0.88684 0.93639 0.88285 0.90682 0.77557 0.80047 0.90031 0.92199 0.84823 0.94274 0.91488 0.92415 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.25 71.98 0.67 -1.14 16 2 C 0.11 1.98 3.52 44.99 0.16 2.14 16 3 C -0.16 -2.33 9.25 71.98 0.67 -1.66 16 4 N -0.44 -10.96 2.61 -491.91 -1.28 -12.24 16 5 C -0.04 -0.88 10.60 83.09 0.88 0.00 16 6 C -0.06 -1.79 11.87 83.52 0.99 -0.80 16 7 N -0.52 -19.56 11.25 -188.13 -2.12 -21.68 16 8 C 0.20 6.52 7.42 138.13 1.02 7.55 16 9 C 0.15 5.12 5.62 85.55 0.48 5.60 16 10 N -0.68 -28.20 6.22 -499.46 -3.11 -31.30 16 11 C 0.19 8.71 2.17 44.17 0.10 8.80 16 12 H 0.03 1.53 6.86 -2.39 -0.02 1.51 16 13 C -0.18 -6.74 8.64 71.98 0.62 -6.11 16 14 C -0.51 -29.71 9.42 25.60 0.24 -29.47 16 15 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 16 C 0.01 0.37 5.45 84.66 0.46 0.83 16 17 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 18 Si 0.96 44.52 24.37 68.60 1.67 46.19 16 19 H -0.26 -11.33 6.87 99.48 0.68 -10.65 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.25 -10.48 6.53 99.48 0.65 -9.83 16 22 H 0.07 0.75 7.95 -2.38 -0.02 0.73 16 23 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 1.77 6.67 -2.38 -0.02 1.76 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 0.94 7.95 -2.38 -0.02 0.92 16 29 H 0.21 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.18 4.22 8.06 -2.91 -0.02 4.19 16 31 H 0.08 3.04 8.05 -2.39 -0.02 3.02 16 32 H 0.06 1.69 6.37 -2.39 -0.02 1.68 16 33 H 0.33 13.00 8.47 -89.69 -0.76 12.24 16 34 H 0.04 1.57 3.27 -2.39 -0.01 1.56 16 35 H 0.07 2.01 7.45 -2.39 -0.02 1.99 16 36 H 0.06 2.16 8.13 -2.39 -0.02 2.14 16 37 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -74.90 298.35 1.97 -72.93 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.21 Total: 20.93 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 6.29 Total: -14.26 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -6.21 Total: -125.79 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.67 Total: 46.19 kcal Total: -74.90 1.97 -72.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597082468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.152 kcal (2) G-P(sol) polarization free energy of solvation -74.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds