Wall clock time and date at job start Sun Mar 29 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 C 1.50694 * 109.47271 * 239.99939 * 2 1 3 5 5 H 1.07996 * 120.00458 * 236.86424 * 4 2 1 6 6 C 1.37886 * 119.99533 * 56.86110 * 4 2 1 7 7 N 1.31503 * 120.00245 * 5.82166 * 6 4 2 8 8 Si 1.86807 * 119.99517 * 185.81921 * 6 4 2 9 9 H 1.48503 * 109.46680 * 85.02880 * 8 6 4 10 10 H 1.48499 * 109.47191 * 205.02398 * 8 6 4 11 11 H 1.48496 * 109.47306 * 325.03027 * 8 6 4 12 12 C 1.53001 * 109.47220 * 119.99929 * 2 1 3 13 13 N 1.46902 * 109.47061 * 299.99871 * 12 2 1 14 14 C 1.46899 * 110.99749 * 179.97438 * 13 12 2 15 15 H 1.08996 * 109.26765 * 35.49753 * 14 13 12 16 16 C 1.52872 * 109.27053 * 276.02713 * 14 13 12 17 17 C 1.53295 * 108.59393 * 184.84470 * 16 14 13 18 18 C 1.52880 * 108.58156 * 74.44475 * 17 16 14 19 19 C 1.52715 * 110.15327 * 305.48019 * 18 17 16 20 20 H 1.09000 * 115.38954 * 231.21475 * 19 18 17 21 21 C 1.53652 * 116.02875 * 90.19854 * 19 18 17 22 22 C 1.52071 * 120.51817 * 21.47002 * 19 18 17 23 23 H 1.09006 * 115.92458 * 209.99257 * 22 19 18 24 24 H 1.09003 * 109.46548 * 293.82657 * 1 2 3 25 25 H 1.08995 * 109.47061 * 53.82303 * 1 2 3 26 26 H 1.08992 * 109.47080 * 173.82544 * 1 2 3 27 27 H 1.09002 * 109.47497 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47498 * 300.00020 * 3 2 1 29 29 H 1.09000 * 109.47338 * 59.99777 * 3 2 1 30 30 H 0.97008 * 120.00176 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47302 * 180.02562 * 12 2 1 32 32 H 1.08994 * 109.46766 * 59.99759 * 12 2 1 33 33 H 1.00895 * 111.00451 * 303.95671 * 13 12 2 34 34 H 1.09003 * 109.61791 * 304.57743 * 16 14 13 35 35 H 1.09001 * 109.61574 * 64.93004 * 16 14 13 36 36 H 1.09004 * 109.62075 * 194.17344 * 17 16 14 37 37 H 1.09002 * 109.61922 * 314.72113 * 17 16 14 38 38 H 1.08998 * 109.35965 * 65.68656 * 18 17 16 39 39 H 1.09003 * 109.35916 * 185.27362 * 18 17 16 40 40 H 1.08998 * 117.53492 * 140.93944 * 21 19 18 41 41 H 1.09000 * 117.53959 * 355.69238 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6944 -1.5580 -1.1322 6 6 1.6467 -0.2782 -2.4817 7 7 0.9350 0.8204 -2.6074 8 14 2.1354 -1.2533 -3.9982 9 1 1.1496 -2.3402 -4.2266 10 1 2.1615 -0.3527 -5.1787 11 1 3.4833 -1.8423 -3.7950 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0287 2.4487 14 6 2.0210 -0.6952 3.6703 15 1 3.0262 -1.0825 3.5043 16 6 1.0833 -1.8551 4.0054 17 6 1.5161 -2.4623 5.3447 18 6 1.0935 -1.5154 6.4681 19 6 1.6479 -0.1155 6.2128 20 1 2.1892 0.3320 7.0463 21 6 0.7476 0.8284 5.4008 22 6 2.0527 0.3108 4.8103 23 1 2.8583 1.0424 4.7485 24 1 -0.3632 0.4152 0.9401 25 1 -0.3633 0.6066 -0.8295 26 1 -0.3633 -1.0216 -0.1105 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 0.6633 1.1243 -3.4877 31 1 3.1301 -0.7208 1.2495 32 1 1.6767 -1.7488 1.2492 33 1 1.8198 0.9436 2.4402 34 1 0.0601 -1.4876 4.0838 35 1 1.1415 -2.6108 3.2220 36 1 1.0334 -3.4301 5.4809 37 1 2.5991 -2.5853 5.3578 38 1 0.0054 -1.4704 6.5126 39 1 1.4768 -1.8880 7.4181 40 1 0.7116 1.8748 5.7037 41 1 -0.1819 0.4206 5.0036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597152295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:11 Heat of formation + Delta-G solvation = 4.357571 kcal Electronic energy + Delta-G solvation = -17680.830810 eV Core-core repulsion = 15174.368995 eV Total energy + Delta-G solvation = -2506.461816 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.61646 -36.55007 -33.69276 -32.75022 -30.99785 -28.21020 -25.53855 -25.19497 -24.64763 -22.95077 -22.44953 -20.56476 -18.51848 -18.11122 -16.35091 -15.78520 -15.15952 -14.53260 -14.25455 -14.05396 -13.36279 -13.13349 -13.06385 -12.64956 -12.20182 -11.94955 -11.92752 -11.23479 -11.21346 -10.98194 -10.82832 -10.79156 -10.59407 -10.53535 -10.12495 -10.08948 -10.06092 -9.82860 -9.62318 -9.31785 -8.97697 -8.58503 -8.24015 -7.60256 -5.88503 -3.97273 3.34005 3.40353 3.42890 3.79977 4.46962 4.65039 4.74179 4.90041 5.05987 5.17531 5.32617 5.37440 5.43266 5.49189 5.69878 5.73780 5.85175 5.94885 5.97485 6.15813 6.18193 6.28695 6.38081 6.40559 6.45608 6.49342 6.65000 6.78220 6.95201 7.13490 7.22448 7.42722 7.52911 7.79453 7.82562 7.89704 8.07527 8.26344 8.37426 8.60152 9.04074 9.67121 11.12703 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.045651 B = 0.005471 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.196062 B = 5116.835543 C = 5399.283404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.069 3.931 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.076 3.924 13 N -0.679 5.679 14 C 0.118 3.882 15 H 0.038 0.962 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.086 4.086 19 C -0.149 4.149 20 H 0.096 0.904 21 C -0.169 4.169 22 C -0.139 4.139 23 H 0.091 0.909 24 H 0.023 0.977 25 H 0.069 0.931 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.082 0.918 29 H 0.010 0.990 30 H 0.257 0.743 31 H 0.010 0.990 32 H 0.055 0.945 33 H 0.338 0.662 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -1.922 15.226 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.052 4.052 13 N -0.311 5.311 14 C 0.008 3.992 15 H 0.056 0.944 16 C -0.146 4.146 17 C -0.157 4.157 18 C -0.124 4.124 19 C -0.168 4.168 20 H 0.114 0.886 21 C -0.206 4.206 22 C -0.157 4.157 23 H 0.110 0.890 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.101 0.899 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.027 -2.117 15.061 15.209 hybrid contribution 1.313 -0.202 -0.923 1.618 sum 1.286 -2.319 14.137 14.384 Atomic orbital electron populations 1.21616 0.97414 0.99165 0.99343 1.18084 0.93149 0.91916 0.90019 1.21845 0.97646 0.99232 1.00189 1.21103 1.28778 1.14157 0.90598 0.93091 1.24878 0.95208 0.94779 0.98602 1.69855 1.38090 1.21405 1.22916 0.86702 0.78833 0.80081 0.82866 1.20723 1.21413 1.20202 1.22174 0.95218 0.97871 0.89963 1.60649 1.63522 1.06230 1.00721 1.20748 0.96235 0.93129 0.89085 0.94395 1.21587 1.00014 0.97137 0.95882 1.21589 1.01056 0.97961 0.95107 1.21019 1.00223 0.92889 0.98229 1.22191 1.03977 0.96480 0.94161 0.88559 1.23032 0.95292 0.98600 1.03652 1.21914 0.99003 1.01182 0.93644 0.89035 0.95813 0.91262 0.96219 0.96327 0.89896 0.97083 0.93238 0.97130 0.92626 0.84280 0.91226 0.91876 0.92088 0.92080 0.91766 0.92134 0.89476 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 8.05 37.16 0.30 -2.60 16 2 C 0.07 1.68 0.57 -155.66 -0.09 1.60 16 3 C -0.13 -3.15 7.95 37.16 0.30 -2.85 16 4 C -0.51 -13.84 8.01 -34.44 -0.28 -14.12 16 5 H 0.05 1.39 7.75 -52.49 -0.41 0.99 16 6 C 0.07 1.82 5.13 -17.82 -0.09 1.73 16 7 N -0.88 -24.75 9.46 55.43 0.52 -24.22 16 8 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.08 1.62 4.38 -3.82 -0.02 1.60 16 13 N -0.68 -12.27 5.40 -107.30 -0.58 -12.85 16 14 C 0.12 1.80 2.55 -68.25 -0.17 1.62 16 15 H 0.04 0.61 7.79 -51.93 -0.40 0.21 16 16 C -0.11 -1.54 5.14 -26.64 -0.14 -1.67 16 17 C -0.12 -1.37 5.93 -26.64 -0.16 -1.53 16 18 C -0.09 -0.90 5.83 -26.94 -0.16 -1.06 16 19 C -0.15 -1.67 6.19 -90.90 -0.56 -2.24 16 20 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 21 C -0.17 -2.06 9.66 -26.75 -0.26 -2.32 16 22 C -0.14 -1.82 5.24 -91.92 -0.48 -2.30 16 23 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.02 0.53 7.42 -51.93 -0.39 0.15 16 25 H 0.07 1.86 6.25 -51.93 -0.32 1.54 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 2.20 6.11 -51.93 -0.32 1.89 16 29 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.01 0.23 8.05 -51.93 -0.42 -0.19 16 32 H 0.06 1.21 7.45 -51.93 -0.39 0.82 16 33 H 0.34 6.13 6.39 -39.29 -0.25 5.88 16 34 H 0.07 1.04 7.11 -51.93 -0.37 0.67 16 35 H 0.06 0.97 7.51 -51.93 -0.39 0.58 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 38 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 1.32 7.26 -51.93 -0.38 0.94 16 LS Contribution 307.41 15.07 4.63 4.63 Total: -1.00 -27.06 307.41 -9.55 -36.61 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.30 Total: 3.67 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -1.81 Total: -24.14 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.06 Total: -37.07 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.06 -9.55 -36.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597152295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.970 kcal (2) G-P(sol) polarization free energy of solvation -27.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds