Wall clock time and date at job start Sun Mar 29 2020 22:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 C 1.50694 * 109.47271 * 239.99939 * 2 1 3 5 5 H 1.07996 * 120.00458 * 236.86424 * 4 2 1 6 6 C 1.37886 * 119.99533 * 56.86110 * 4 2 1 7 7 N 1.31503 * 120.00245 * 5.82166 * 6 4 2 8 8 Si 1.86807 * 119.99517 * 185.81921 * 6 4 2 9 9 H 1.48503 * 109.46680 * 85.02880 * 8 6 4 10 10 H 1.48499 * 109.47191 * 205.02398 * 8 6 4 11 11 H 1.48496 * 109.47306 * 325.03027 * 8 6 4 12 12 C 1.53001 * 109.47220 * 119.99929 * 2 1 3 13 13 N 1.46902 * 109.47061 * 299.99871 * 12 2 1 14 14 C 1.46899 * 110.99749 * 179.97438 * 13 12 2 15 15 H 1.08996 * 109.26765 * 35.49753 * 14 13 12 16 16 C 1.52872 * 109.27053 * 276.02713 * 14 13 12 17 17 C 1.53295 * 108.59393 * 184.84470 * 16 14 13 18 18 C 1.52880 * 108.58156 * 74.44475 * 17 16 14 19 19 C 1.52715 * 110.15327 * 305.48019 * 18 17 16 20 20 H 1.09000 * 115.38954 * 231.21475 * 19 18 17 21 21 C 1.53652 * 116.02875 * 90.19854 * 19 18 17 22 22 C 1.52071 * 120.51817 * 21.47002 * 19 18 17 23 23 H 1.09006 * 115.92458 * 209.99257 * 22 19 18 24 24 H 1.09003 * 109.46548 * 293.82657 * 1 2 3 25 25 H 1.08995 * 109.47061 * 53.82303 * 1 2 3 26 26 H 1.08992 * 109.47080 * 173.82544 * 1 2 3 27 27 H 1.09002 * 109.47497 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47498 * 300.00020 * 3 2 1 29 29 H 1.09000 * 109.47338 * 59.99777 * 3 2 1 30 30 H 0.97008 * 120.00176 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47302 * 180.02562 * 12 2 1 32 32 H 1.08994 * 109.46766 * 59.99759 * 12 2 1 33 33 H 1.00895 * 111.00451 * 303.95671 * 13 12 2 34 34 H 1.09003 * 109.61791 * 304.57743 * 16 14 13 35 35 H 1.09001 * 109.61574 * 64.93004 * 16 14 13 36 36 H 1.09004 * 109.62075 * 194.17344 * 17 16 14 37 37 H 1.09002 * 109.61922 * 314.72113 * 17 16 14 38 38 H 1.08998 * 109.35965 * 65.68656 * 18 17 16 39 39 H 1.09003 * 109.35916 * 185.27362 * 18 17 16 40 40 H 1.08998 * 117.53492 * 140.93944 * 21 19 18 41 41 H 1.09000 * 117.53959 * 355.69238 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6944 -1.5580 -1.1322 6 6 1.6467 -0.2782 -2.4817 7 7 0.9350 0.8204 -2.6074 8 14 2.1354 -1.2533 -3.9982 9 1 1.1496 -2.3402 -4.2266 10 1 2.1615 -0.3527 -5.1787 11 1 3.4833 -1.8423 -3.7950 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0287 2.4487 14 6 2.0210 -0.6952 3.6703 15 1 3.0262 -1.0825 3.5043 16 6 1.0833 -1.8551 4.0054 17 6 1.5161 -2.4623 5.3447 18 6 1.0935 -1.5154 6.4681 19 6 1.6479 -0.1155 6.2128 20 1 2.1892 0.3320 7.0463 21 6 0.7476 0.8284 5.4008 22 6 2.0527 0.3108 4.8103 23 1 2.8583 1.0424 4.7485 24 1 -0.3632 0.4152 0.9401 25 1 -0.3633 0.6066 -0.8295 26 1 -0.3633 -1.0216 -0.1105 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 0.6633 1.1243 -3.4877 31 1 3.1301 -0.7208 1.2495 32 1 1.6767 -1.7488 1.2492 33 1 1.8198 0.9436 2.4402 34 1 0.0601 -1.4876 4.0838 35 1 1.1415 -2.6108 3.2220 36 1 1.0334 -3.4301 5.4809 37 1 2.5991 -2.5853 5.3578 38 1 0.0054 -1.4704 6.5126 39 1 1.4768 -1.8880 7.4181 40 1 0.7116 1.8748 5.7037 41 1 -0.1819 0.4206 5.0036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597152295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:10 Heat of formation + Delta-G solvation = -9.186658 kcal Electronic energy + Delta-G solvation = -17681.418132 eV Core-core repulsion = 15174.368995 eV Total energy + Delta-G solvation = -2507.049138 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68665 -38.29860 -35.29620 -33.79392 -32.83970 -29.50960 -27.51571 -27.24677 -26.10857 -24.30476 -23.47121 -21.59695 -20.27768 -19.34732 -17.91221 -17.25401 -16.78132 -16.24363 -15.60496 -15.28757 -14.76572 -14.47581 -14.39463 -14.19260 -13.72771 -13.52382 -13.24470 -13.00576 -12.87538 -12.56107 -12.48086 -12.19381 -12.15611 -12.09769 -11.84918 -11.72057 -11.28916 -11.12141 -11.04418 -10.76361 -10.60000 -10.51777 -10.32542 -9.10985 -7.97517 -6.13036 1.42002 1.43757 1.51545 2.46181 2.80480 3.24835 3.50916 3.70489 3.88403 4.10448 4.13252 4.30336 4.43262 4.50812 4.56875 4.61409 4.67508 4.77055 4.79159 4.88354 5.01129 5.02697 5.08956 5.16426 5.19112 5.27188 5.29054 5.33252 5.41063 5.42750 5.47418 5.52714 5.56573 5.70233 5.77136 6.18668 6.29978 6.35312 6.50227 6.69722 6.96326 7.53990 9.01352 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.045651 B = 0.005471 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.196062 B = 5116.835543 C = 5399.283404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.060 3.940 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.024 3.976 7 N -0.902 5.902 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.093 3.907 13 N -0.679 5.679 14 C 0.118 3.882 15 H 0.029 0.971 16 C -0.106 4.106 17 C -0.114 4.114 18 C -0.087 4.087 19 C -0.132 4.132 20 H 0.116 0.884 21 C -0.170 4.170 22 C -0.155 4.155 23 H 0.095 0.905 24 H 0.038 0.962 25 H 0.045 0.955 26 H 0.008 0.992 27 H 0.015 0.985 28 H 0.055 0.945 29 H 0.033 0.967 30 H 0.257 0.743 31 H 0.003 0.997 32 H 0.046 0.954 33 H 0.338 0.662 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 -2.224 16.949 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.059 3.941 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.541 5.541 8 Si 0.770 3.230 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.199 1.199 12 C -0.036 4.036 13 N -0.310 5.310 14 C 0.009 3.991 15 H 0.047 0.953 16 C -0.144 4.144 17 C -0.152 4.152 18 C -0.124 4.124 19 C -0.151 4.151 20 H 0.134 0.866 21 C -0.207 4.207 22 C -0.173 4.173 23 H 0.113 0.887 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.157 0.843 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.240 -2.423 16.797 16.973 hybrid contribution 1.218 -0.107 -1.439 1.889 sum 1.458 -2.530 15.358 15.633 Atomic orbital electron populations 1.21438 0.97651 0.97952 0.98993 1.18139 0.92909 0.92333 0.90696 1.21668 0.97292 0.98842 0.99921 1.21415 1.28973 1.14275 0.92100 0.93931 1.25530 0.95346 0.95599 1.01077 1.69983 1.38577 1.22231 1.23346 0.85803 0.78539 0.78835 0.79790 1.20444 1.21011 1.19874 1.21812 0.94476 0.97183 0.90139 1.60602 1.63517 1.06144 1.00781 1.20795 0.95826 0.93914 0.88611 0.95295 1.21558 0.99395 0.96357 0.97139 1.21559 1.01191 0.98722 0.93707 1.21067 1.00507 0.92126 0.98677 1.22329 1.02680 0.96750 0.93308 0.86601 1.23046 0.94241 0.99595 1.03828 1.21832 0.99941 1.01347 0.94196 0.88710 0.94339 0.93651 0.97300 0.96609 0.92579 0.94810 0.93317 0.97899 0.93566 0.84289 0.92009 0.93698 0.90795 0.91992 0.91496 0.89875 0.88289 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.10 8.05 71.98 0.58 -4.52 16 2 C 0.06 2.95 0.57 -52.93 -0.03 2.92 16 3 C -0.12 -5.73 7.95 71.98 0.57 -5.16 16 4 C -0.53 -29.17 8.01 25.60 0.20 -28.96 16 5 H 0.04 2.36 7.75 -2.91 -0.02 2.33 16 6 C 0.02 1.31 5.13 84.66 0.43 1.74 16 7 N -0.90 -51.07 9.46 21.45 0.20 -50.87 16 8 Si 0.94 43.93 29.54 68.60 2.03 45.96 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.09 3.97 4.38 86.30 0.38 4.34 16 13 N -0.68 -24.19 5.40 -493.39 -2.67 -26.86 16 14 C 0.12 3.49 2.55 44.57 0.11 3.61 16 15 H 0.03 0.92 7.79 -2.39 -0.02 0.90 16 16 C -0.11 -2.94 5.14 30.65 0.16 -2.78 16 17 C -0.11 -2.37 5.93 30.65 0.18 -2.19 16 18 C -0.09 -1.54 5.83 30.46 0.18 -1.36 16 19 C -0.13 -2.56 6.19 -10.98 -0.07 -2.62 16 20 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 21 C -0.17 -3.77 9.66 30.58 0.30 -3.48 16 22 C -0.15 -3.77 5.24 -11.64 -0.06 -3.83 16 23 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 24 H 0.04 1.74 7.42 -2.39 -0.02 1.73 16 25 H 0.04 2.46 6.25 -2.39 -0.01 2.44 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 3.00 6.11 -2.39 -0.01 2.99 16 29 H 0.03 1.42 6.57 -2.39 -0.02 1.40 16 30 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 31 H 0.00 0.12 8.05 -2.39 -0.02 0.11 16 32 H 0.05 2.04 7.45 -2.39 -0.02 2.02 16 33 H 0.34 11.95 6.39 -89.70 -0.57 11.38 16 34 H 0.06 1.79 7.11 -2.39 -0.02 1.78 16 35 H 0.04 1.38 7.51 -2.39 -0.02 1.36 16 36 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.06 1.29 8.04 -2.39 -0.02 1.27 16 38 H 0.07 1.19 8.06 -2.39 -0.02 1.17 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.09 2.17 7.26 -2.39 -0.02 2.15 16 Total: -1.00 -57.31 307.41 2.91 -54.40 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.41 Total: 19.65 kcal Atomic # 6 Polarization: -45.22 SS G_CDS: 2.94 Total: -42.29 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.46 Total: -77.72 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -57.31 2.91 -54.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597152295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.215 kcal (2) G-P(sol) polarization free energy of solvation -57.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds