Wall clock time and date at job start Sun Mar 29 2020 22:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00221 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00561 * 2 1 3 13 13 N 1.46893 * 109.47285 * 59.99494 * 12 2 1 14 14 C 1.46897 * 111.00104 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.35538 * 324.71940 * 14 13 12 16 16 C 1.52879 * 109.35886 * 84.31163 * 14 13 12 17 17 C 1.56464 * 106.95944 * 176.45562 * 16 14 13 18 18 C 1.52877 * 107.86559 * 284.18564 * 17 16 14 19 19 C 1.52069 * 110.51132 * 55.50198 * 18 17 16 20 20 H 1.09002 * 114.26514 * 193.76247 * 19 18 17 21 21 C 1.49178 * 119.09257 * 50.08709 * 19 18 17 22 22 C 1.52063 * 120.02502 * 338.30031 * 19 18 17 23 23 H 1.08994 * 117.25946 * 215.56246 * 22 19 18 24 24 H 1.09004 * 109.46783 * 299.99970 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99629 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47069 * 300.00573 * 3 2 1 29 29 H 1.09004 * 109.46658 * 59.99952 * 3 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47211 * 180.02562 * 12 2 1 32 32 H 1.09007 * 109.46376 * 299.99965 * 12 2 1 33 33 H 1.00908 * 110.99637 * 56.05081 * 13 12 2 34 34 H 1.09007 * 109.61155 * 294.45637 * 16 14 13 35 35 H 1.08998 * 109.61728 * 55.00015 * 16 14 13 36 36 H 1.09002 * 109.46892 * 164.96870 * 17 16 14 37 37 H 1.09002 * 110.48331 * 43.98488 * 17 16 14 38 38 H 1.08996 * 109.26605 * 295.23899 * 18 17 16 39 39 H 1.09004 * 109.26526 * 175.77251 * 18 17 16 40 40 H 1.08996 * 117.66026 * 142.05435 * 21 19 18 41 41 H 1.09000 * 117.07312 * 357.42987 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.6178 -0.5547 4.4187 10 1 1.3286 -0.9598 5.1087 11 1 2.4765 -2.5730 3.7085 12 6 2.0400 -0.7211 -1.2493 13 7 1.5503 -0.0287 -2.4487 14 6 2.0208 -0.6950 -3.6703 15 1 3.0246 -1.0862 -3.5047 16 6 1.0797 -1.8503 -4.0121 17 6 1.5772 -2.4595 -5.3646 18 6 1.1554 -1.5131 -6.4886 19 6 1.6802 -0.1097 -6.2286 20 1 1.2279 0.6605 -6.8533 21 6 3.1223 0.0751 -5.8944 22 6 2.0534 0.3136 -4.8166 23 1 1.8516 1.3471 -4.5355 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7006 1.1553 3.4844 31 1 3.1300 -0.7215 -1.2491 32 1 1.6766 -1.7488 -1.2493 33 1 1.8198 0.9437 -2.4401 34 1 1.1403 -2.6134 -3.2360 35 1 0.0572 -1.4798 -4.0857 36 1 1.1155 -3.4354 -5.5152 37 1 2.6624 -2.5621 -5.3604 38 1 0.0673 -1.4853 -6.5460 39 1 1.5558 -1.8774 -7.4348 40 1 3.6287 0.9490 -6.3040 41 1 3.7312 -0.8250 -5.8098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597152301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:13 Heat of formation + Delta-G solvation = 5.399222 kcal Electronic energy + Delta-G solvation = -17613.552859 eV Core-core repulsion = 15107.136213 eV Total energy + Delta-G solvation = -2506.416646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.70439 -36.62820 -33.82692 -32.57364 -31.00717 -28.21885 -25.54628 -25.21888 -24.67489 -23.07018 -22.10465 -20.86346 -18.53542 -18.15703 -16.43161 -15.64168 -15.05578 -14.53086 -14.29983 -14.09807 -13.60775 -13.17955 -13.04092 -12.54993 -12.15805 -12.08231 -11.78138 -11.38348 -11.12426 -11.04163 -10.93778 -10.78952 -10.63809 -10.58573 -10.19885 -10.09907 -10.03263 -9.85387 -9.60337 -9.31334 -8.97785 -8.57658 -8.25644 -7.61583 -5.87918 -3.98164 3.33117 3.40126 3.43309 3.82631 4.44131 4.57339 4.68281 4.87392 5.05739 5.18046 5.32062 5.37429 5.43036 5.51043 5.61434 5.65545 5.77362 5.84415 6.04129 6.05511 6.15790 6.21162 6.35956 6.40641 6.43928 6.47551 6.64614 6.77547 6.94646 7.12915 7.21738 7.43616 7.53028 7.79508 7.81280 7.89569 8.06362 8.25882 8.39210 8.60078 9.03402 9.66658 11.12562 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.045682 B = 0.005291 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.791352 B = 5291.047722 C = 5460.156325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.068 3.932 3 C -0.132 4.132 4 C -0.505 4.505 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.076 3.924 13 N -0.681 5.681 14 C 0.117 3.883 15 H 0.037 0.963 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.088 4.088 19 C -0.135 4.135 20 H 0.094 0.906 21 C -0.186 4.186 22 C -0.143 4.143 23 H 0.106 0.894 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.017 0.983 27 H 0.018 0.982 28 H 0.011 0.989 29 H 0.082 0.918 30 H 0.257 0.743 31 H 0.011 0.989 32 H 0.055 0.945 33 H 0.337 0.663 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 -2.121 -15.303 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.544 4.544 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.052 4.052 13 N -0.314 5.314 14 C 0.007 3.993 15 H 0.055 0.945 16 C -0.142 4.142 17 C -0.162 4.162 18 C -0.125 4.125 19 C -0.153 4.153 20 H 0.112 0.888 21 C -0.223 4.223 22 C -0.162 4.162 23 H 0.124 0.876 24 H 0.092 0.908 25 H 0.039 0.961 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.030 0.970 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.804 -2.326 -15.142 15.341 hybrid contribution 1.393 -0.156 0.861 1.645 sum 2.197 -2.482 -14.281 14.661 Atomic orbital electron populations 1.21631 0.97410 0.98527 1.00047 1.18093 0.93193 0.91932 0.90000 1.21829 0.97665 0.99235 1.00229 1.21118 1.30900 1.11875 0.90533 0.93080 1.24881 0.95034 0.95008 0.98655 1.69835 1.36775 1.22935 1.22842 0.86670 0.78482 0.80133 0.83105 1.20897 1.21309 1.20091 1.22175 0.95259 0.97842 0.89931 1.60682 1.63665 1.06120 1.00909 1.20989 0.96117 0.93257 0.88914 0.94489 1.22130 0.99844 0.96760 0.95468 1.22183 1.00648 0.98078 0.95264 1.20859 1.00682 0.92827 0.98167 1.21269 0.97683 0.98462 0.97916 0.88776 1.22641 0.92276 1.02976 1.04412 1.22412 1.03780 1.00199 0.89797 0.87626 0.90804 0.96087 0.96370 0.96274 0.97049 0.89900 0.93235 0.97070 0.92652 0.84332 0.92130 0.90628 0.91984 0.92088 0.91551 0.92122 0.89327 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.09 37.16 0.30 -2.63 16 2 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 3 C -0.13 -3.16 7.92 37.16 0.29 -2.86 16 4 C -0.51 -13.78 8.01 -34.44 -0.28 -14.06 16 5 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 6 C 0.06 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.74 9.35 55.43 0.52 -24.22 16 8 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.08 1.63 4.38 -3.83 -0.02 1.61 16 13 N -0.68 -12.42 5.51 -106.95 -0.59 -13.01 16 14 C 0.12 1.80 2.38 -67.92 -0.16 1.64 16 15 H 0.04 0.60 7.71 -51.93 -0.40 0.20 16 16 C -0.10 -1.49 5.52 -24.93 -0.14 -1.63 16 17 C -0.12 -1.42 5.81 -24.93 -0.14 -1.56 16 18 C -0.09 -0.92 5.92 -27.27 -0.16 -1.08 16 19 C -0.13 -1.52 5.91 -93.45 -0.55 -2.07 16 20 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 21 C -0.19 -2.10 9.48 -28.27 -0.27 -2.37 16 22 C -0.14 -1.89 5.79 -90.90 -0.53 -2.41 16 23 H 0.11 1.41 7.68 -51.93 -0.40 1.02 16 24 H 0.07 2.00 6.06 -51.93 -0.31 1.68 16 25 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 29 H 0.08 2.20 6.08 -51.93 -0.32 1.88 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.01 0.24 8.05 -51.93 -0.42 -0.18 16 32 H 0.05 1.21 7.49 -51.93 -0.39 0.82 16 33 H 0.34 6.09 6.11 -39.29 -0.24 5.85 16 34 H 0.06 0.93 7.55 -51.92 -0.39 0.54 16 35 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.70 7.00 -51.93 -0.36 0.33 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.04 7.12 -51.93 -0.37 0.67 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -27.15 306.84 -9.56 -36.71 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.26 Total: 3.76 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -1.83 Total: -24.15 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.07 Total: -37.22 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.15 -9.56 -36.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597152301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.111 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds