Wall clock time and date at job start Sun Mar 29 2020 22:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00221 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00561 * 2 1 3 13 13 N 1.46893 * 109.47285 * 59.99494 * 12 2 1 14 14 C 1.46897 * 111.00104 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.35538 * 324.71940 * 14 13 12 16 16 C 1.52879 * 109.35886 * 84.31163 * 14 13 12 17 17 C 1.56464 * 106.95944 * 176.45562 * 16 14 13 18 18 C 1.52877 * 107.86559 * 284.18564 * 17 16 14 19 19 C 1.52069 * 110.51132 * 55.50198 * 18 17 16 20 20 H 1.09002 * 114.26514 * 193.76247 * 19 18 17 21 21 C 1.49178 * 119.09257 * 50.08709 * 19 18 17 22 22 C 1.52063 * 120.02502 * 338.30031 * 19 18 17 23 23 H 1.08994 * 117.25946 * 215.56246 * 22 19 18 24 24 H 1.09004 * 109.46783 * 299.99970 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99629 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47069 * 300.00573 * 3 2 1 29 29 H 1.09004 * 109.46658 * 59.99952 * 3 2 1 30 30 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47211 * 180.02562 * 12 2 1 32 32 H 1.09007 * 109.46376 * 299.99965 * 12 2 1 33 33 H 1.00908 * 110.99637 * 56.05081 * 13 12 2 34 34 H 1.09007 * 109.61155 * 294.45637 * 16 14 13 35 35 H 1.08998 * 109.61728 * 55.00015 * 16 14 13 36 36 H 1.09002 * 109.46892 * 164.96870 * 17 16 14 37 37 H 1.09002 * 110.48331 * 43.98488 * 17 16 14 38 38 H 1.08996 * 109.26605 * 295.23899 * 18 17 16 39 39 H 1.09004 * 109.26526 * 175.77251 * 18 17 16 40 40 H 1.08996 * 117.66026 * 142.05435 * 21 19 18 41 41 H 1.09000 * 117.07312 * 357.42987 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.6178 -0.5547 4.4187 10 1 1.3286 -0.9598 5.1087 11 1 2.4765 -2.5730 3.7085 12 6 2.0400 -0.7211 -1.2493 13 7 1.5503 -0.0287 -2.4487 14 6 2.0208 -0.6950 -3.6703 15 1 3.0246 -1.0862 -3.5047 16 6 1.0797 -1.8503 -4.0121 17 6 1.5772 -2.4595 -5.3646 18 6 1.1554 -1.5131 -6.4886 19 6 1.6802 -0.1097 -6.2286 20 1 1.2279 0.6605 -6.8533 21 6 3.1223 0.0751 -5.8944 22 6 2.0534 0.3136 -4.8166 23 1 1.8516 1.3471 -4.5355 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.7006 1.1553 3.4844 31 1 3.1300 -0.7215 -1.2491 32 1 1.6766 -1.7488 -1.2493 33 1 1.8198 0.9437 -2.4401 34 1 1.1403 -2.6134 -3.2360 35 1 0.0572 -1.4798 -4.0857 36 1 1.1155 -3.4354 -5.5152 37 1 2.6624 -2.5621 -5.3604 38 1 0.0673 -1.4853 -6.5460 39 1 1.5558 -1.8774 -7.4348 40 1 3.6287 0.9490 -6.3040 41 1 3.7312 -0.8250 -5.8098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597152301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:12 Heat of formation + Delta-G solvation = -8.262857 kcal Electronic energy + Delta-G solvation = -17614.145291 eV Core-core repulsion = 15107.136213 eV Total energy + Delta-G solvation = -2507.009078 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74115 -38.37005 -35.42835 -33.64689 -32.82377 -29.52311 -27.51870 -27.25997 -26.15718 -24.22275 -23.31698 -21.89377 -20.28169 -19.31901 -17.99956 -17.25855 -16.64597 -16.16390 -15.60757 -15.18037 -15.04732 -14.54641 -14.37611 -14.18937 -13.75890 -13.45126 -13.15087 -12.98906 -12.94181 -12.55765 -12.52950 -12.23656 -12.14355 -12.06510 -11.90827 -11.81781 -11.34719 -11.17100 -11.02004 -10.80679 -10.56899 -10.47143 -10.33997 -9.12683 -7.96594 -6.13673 1.41847 1.43831 1.52527 2.46403 2.89842 3.25227 3.32754 3.70030 3.94589 4.06191 4.18604 4.35295 4.40542 4.46650 4.49846 4.55256 4.62977 4.69865 4.86694 4.89315 4.92644 5.00133 5.12522 5.13884 5.21006 5.23790 5.27140 5.32180 5.35776 5.43094 5.43854 5.51454 5.54959 5.69750 5.76947 6.19235 6.29487 6.36053 6.50769 6.68152 6.95676 7.53823 9.01624 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.045682 B = 0.005291 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.791352 B = 5291.047722 C = 5460.156325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.059 3.941 3 C -0.120 4.120 4 C -0.527 4.527 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.903 5.903 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.093 3.907 13 N -0.682 5.682 14 C 0.119 3.881 15 H 0.027 0.973 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.088 4.088 19 C -0.125 4.125 20 H 0.108 0.892 21 C -0.175 4.175 22 C -0.166 4.166 23 H 0.102 0.898 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.009 0.991 27 H 0.015 0.985 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.258 0.742 31 H 0.003 0.997 32 H 0.045 0.955 33 H 0.338 0.662 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 -2.420 -17.011 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.059 3.941 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.542 5.542 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.199 1.199 12 C -0.036 4.036 13 N -0.314 5.314 14 C 0.009 3.991 15 H 0.045 0.955 16 C -0.142 4.142 17 C -0.155 4.155 18 C -0.125 4.125 19 C -0.144 4.144 20 H 0.126 0.874 21 C -0.212 4.212 22 C -0.185 4.185 23 H 0.120 0.880 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.157 0.843 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.188 -2.626 -16.865 17.110 hybrid contribution 1.264 -0.061 1.369 1.864 sum 2.452 -2.687 -15.496 15.917 Atomic orbital electron populations 1.21456 0.97683 0.97681 0.99366 1.18149 0.92937 0.92380 0.90676 1.21657 0.97331 0.98821 0.99993 1.21423 1.31138 1.11990 0.92029 0.93921 1.25534 0.95264 0.95698 1.01153 1.69964 1.37262 1.23716 1.23290 0.85767 0.78036 0.79104 0.79932 1.20444 1.20972 1.19871 1.21810 0.94512 0.97129 0.90115 1.60637 1.63691 1.06116 1.00999 1.21023 0.95627 0.94003 0.88427 0.95479 1.22109 0.99211 0.96022 0.96884 1.22143 1.00755 0.98836 0.93758 1.20900 1.01072 0.92032 0.98493 1.21396 0.97643 0.99278 0.96039 0.87419 1.22696 0.92378 1.03538 1.02594 1.22280 1.06766 0.99328 0.90078 0.87987 0.93255 0.94752 0.97206 0.96537 0.94760 0.92536 0.93296 0.97835 0.93645 0.84256 0.93943 0.91532 0.90687 0.91931 0.91135 0.90016 0.87954 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.20 8.09 71.98 0.58 -4.62 16 2 C 0.06 2.92 0.57 -52.93 -0.03 2.89 16 3 C -0.12 -5.77 7.92 71.98 0.57 -5.20 16 4 C -0.53 -29.07 8.01 25.60 0.21 -28.86 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.02 1.24 5.15 84.65 0.44 1.67 16 7 N -0.90 -51.03 9.35 21.45 0.20 -50.83 16 8 Si 0.94 43.88 29.54 68.60 2.03 45.90 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.09 4.01 4.38 86.31 0.38 4.39 16 13 N -0.68 -24.62 5.51 -492.27 -2.71 -27.33 16 14 C 0.12 3.55 2.38 44.78 0.11 3.66 16 15 H 0.03 0.87 7.71 -2.39 -0.02 0.85 16 16 C -0.10 -2.90 5.52 31.76 0.18 -2.73 16 17 C -0.12 -2.43 5.81 31.76 0.18 -2.25 16 18 C -0.09 -1.57 5.92 30.25 0.18 -1.39 16 19 C -0.13 -2.45 5.91 -12.63 -0.07 -2.53 16 20 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 21 C -0.17 -3.48 9.48 29.60 0.28 -3.20 16 22 C -0.17 -4.09 5.79 -10.97 -0.06 -4.15 16 23 H 0.10 2.59 7.68 -2.39 -0.02 2.57 16 24 H 0.05 2.70 6.06 -2.38 -0.01 2.69 16 25 H 0.03 1.57 7.60 -2.38 -0.02 1.55 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.03 1.44 6.57 -2.39 -0.02 1.42 16 29 H 0.06 3.02 6.08 -2.38 -0.01 3.00 16 30 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 31 H 0.00 0.15 8.05 -2.39 -0.02 0.13 16 32 H 0.05 2.02 7.49 -2.38 -0.02 2.00 16 33 H 0.34 11.97 6.11 -89.69 -0.55 11.43 16 34 H 0.04 1.31 7.55 -2.38 -0.02 1.29 16 35 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.29 7.00 -2.39 -0.02 1.27 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 1.85 7.12 -2.39 -0.02 1.83 16 Total: -1.00 -57.50 306.84 2.88 -54.62 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.44 Total: 19.94 kcal Atomic # 6 Polarization: -45.23 SS G_CDS: 2.93 Total: -42.30 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.51 Total: -78.16 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -57.50 2.88 -54.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597152301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.358 kcal (2) G-P(sol) polarization free energy of solvation -57.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds