Wall clock time and date at job start Sun Mar 29 2020 21:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47232 * 239.99461 * 3 2 1 5 5 H 1.48502 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47248 * 119.99661 * 3 2 1 7 7 C 1.37877 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99628 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00372 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.17429 * 179.97438 * 9 7 2 11 11 N 1.47482 * 87.93588 * 220.33324 * 10 9 7 12 12 C 1.46894 * 110.99943 * 138.70119 * 11 10 9 13 13 C 1.53000 * 109.46930 * 169.99867 * 12 11 10 14 14 C 1.52997 * 109.47260 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47415 * 175.00324 * 14 13 12 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 C 1.52997 * 109.47232 * 295.00198 * 14 13 12 20 20 C 1.47484 * 87.83314 * 27.01028 * 11 10 9 21 21 H 0.97005 * 119.99526 * 0.02562 * 1 2 3 22 22 H 1.08998 * 113.26038 * 312.95236 * 9 7 2 23 23 H 1.08995 * 113.47726 * 105.56401 * 10 9 7 24 24 H 1.09008 * 113.47334 * 335.10106 * 10 9 7 25 25 H 1.09001 * 109.47100 * 50.00664 * 12 11 10 26 26 H 1.08996 * 109.47763 * 289.99798 * 12 11 10 27 27 H 1.09000 * 109.47102 * 60.00468 * 13 12 11 28 28 H 1.09001 * 109.47254 * 300.00301 * 13 12 11 29 29 H 1.09002 * 109.47497 * 54.99973 * 14 13 12 30 30 H 1.08992 * 109.47063 * 59.99950 * 15 14 13 31 31 H 1.09004 * 109.46733 * 299.99664 * 15 14 13 32 32 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 33 33 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 34 34 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 36 36 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 38 38 H 1.09002 * 109.47153 * 299.99992 * 19 14 13 39 39 H 1.09001 * 109.47289 * 60.00075 * 19 14 13 40 40 H 1.08994 * 113.47401 * 87.75977 * 20 11 10 41 41 H 1.09000 * 113.47198 * 218.22286 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1495 -3.7438 0.0005 11 7 1.2075 -4.3584 -0.9534 12 6 1.9259 -5.0862 -2.0078 13 6 0.9310 -5.9107 -2.8271 14 6 1.6793 -6.6693 -3.9250 15 6 0.7052 -7.5887 -4.6644 16 6 1.4537 -8.3478 -5.7619 17 6 2.0614 -7.3493 -6.7490 18 6 3.0355 -6.4298 -6.0097 19 6 2.2866 -5.6704 -4.9120 20 6 0.8555 -2.9966 -1.3969 21 1 -0.4850 0.8401 -0.0004 22 1 0.4446 -2.5306 0.7332 23 1 2.1862 -4.2529 0.9636 24 1 3.1390 -3.5650 -0.4204 25 1 2.6615 -5.7505 -1.5543 26 1 2.4322 -4.3748 -2.6602 27 1 0.1953 -5.2465 -3.2807 28 1 0.4246 -6.6222 -2.1747 29 1 2.4737 -7.2664 -3.4773 30 1 -0.0892 -6.9917 -5.1121 31 1 0.2725 -8.3005 -3.9612 32 1 2.2479 -8.9450 -5.3138 33 1 0.7596 -9.0025 -6.2890 34 1 2.5943 -7.8899 -7.5312 35 1 1.2672 -6.7521 -7.1971 36 1 3.4682 -5.7181 -6.7128 37 1 3.8297 -7.0270 -5.5616 38 1 1.4922 -5.0733 -5.3597 39 1 2.9806 -5.0154 -4.3852 40 1 1.4996 -2.6185 -2.1908 41 1 -0.2045 -2.8724 -1.6182 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:09 Heat of formation + Delta-G solvation = -6.200834 kcal Electronic energy + Delta-G solvation = -17056.561404 eV Core-core repulsion = 14549.641741 eV Total energy + Delta-G solvation = -2506.919662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.22559 -38.35277 -33.72001 -32.41093 -30.80567 -29.49254 -26.61226 -24.72473 -24.20508 -22.74060 -21.68863 -20.25993 -19.70369 -18.55183 -16.57727 -15.55089 -15.00116 -14.67712 -14.33780 -14.26362 -13.89782 -13.86882 -13.80181 -12.60822 -12.45984 -12.16848 -12.10527 -11.67018 -11.47008 -11.24832 -11.14953 -11.08226 -10.90279 -10.84213 -10.51168 -10.42135 -10.14875 -10.09394 -9.88103 -9.55098 -9.12783 -8.88549 -8.41166 -7.90943 -6.03302 -4.07739 3.31050 3.36097 3.38279 4.41274 4.59446 4.67858 4.73162 5.00200 5.14159 5.21205 5.26372 5.40974 5.46952 5.48082 5.49991 5.57587 5.62007 5.86635 5.92304 5.94483 6.01653 6.02912 6.10235 6.12577 6.20708 6.24517 6.30712 6.34648 6.44558 6.51756 6.60665 6.64648 6.72257 6.84821 7.18580 7.27600 7.75108 7.94683 8.16221 8.40533 8.95110 9.56941 11.06331 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.038985 B = 0.004499 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.055310 B = 6221.738653 C = 6532.434851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.040 3.960 10 C -0.006 4.006 11 N -0.487 5.487 12 C 0.021 3.979 13 C -0.103 4.103 14 C -0.085 4.085 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.117 4.117 20 C 0.007 3.993 21 H 0.262 0.738 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 -13.548 -10.773 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.021 3.979 10 C -0.135 4.135 11 N -0.209 5.209 12 C -0.108 4.108 13 C -0.141 4.141 14 C -0.104 4.104 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.122 4.122 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.774 -13.921 -10.566 17.695 hybrid contribution 1.140 1.396 -0.486 1.866 sum 3.913 -12.525 -11.052 17.157 Atomic orbital electron populations 1.69964 1.05989 1.26804 1.49646 1.25012 0.94815 0.99110 0.94633 0.86684 0.79655 0.83145 0.78663 1.20270 1.21224 1.20145 1.21016 0.92697 0.90368 1.51468 0.92550 1.20098 0.94315 0.90806 0.92670 1.23975 0.95753 0.97775 0.95955 1.68806 1.27441 1.14180 1.10499 1.22662 0.95994 0.97696 0.94459 1.21481 0.98071 0.98540 0.95991 1.21152 0.97649 0.96251 0.95344 1.21578 0.98023 0.98249 0.97274 1.21531 0.99573 0.97666 0.96847 1.21535 0.98882 0.97612 0.97660 1.21548 0.97981 0.98381 0.97773 1.21659 0.99847 0.97740 0.96230 1.24063 1.00010 0.87011 1.01147 0.92833 0.91852 0.92191 0.93027 0.92491 0.94166 0.92134 0.91746 0.91582 0.92035 0.92124 0.92219 0.92401 0.92512 0.92124 0.92316 0.92242 0.92010 0.91688 0.93028 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.26 55.43 0.74 -25.10 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.30 8.82 -34.44 -0.30 -14.60 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.04 1.03 3.77 -91.24 -0.34 0.69 16 10 C -0.01 -0.13 7.25 -7.55 -0.05 -0.18 16 11 N -0.49 -10.16 6.33 -244.63 -1.55 -11.71 16 12 C 0.02 0.36 4.57 -3.83 -0.02 0.34 16 13 C -0.10 -1.52 5.01 -26.73 -0.13 -1.65 16 14 C -0.08 -1.02 2.19 -90.62 -0.20 -1.22 16 15 C -0.11 -1.21 5.20 -26.73 -0.14 -1.35 16 16 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 17 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 18 C -0.12 -1.21 5.93 -26.71 -0.16 -1.36 16 19 C -0.12 -1.40 4.96 -26.71 -0.13 -1.53 16 20 C 0.01 0.16 7.28 -7.54 -0.05 0.10 16 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 22 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.05 1.10 7.87 -51.92 -0.41 0.69 16 25 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 26 H 0.04 0.71 5.73 -51.93 -0.30 0.41 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 40 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 41 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 316.56 15.07 4.77 4.77 Total: -1.00 -28.02 316.56 -10.75 -38.77 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.73 Total: -1.39 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -1.95 Total: -21.52 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.81 Total: -36.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.02 -10.75 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.569 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds