Wall clock time and date at job start Sun Mar 29 2020 21:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47232 * 239.99461 * 3 2 1 5 5 H 1.48502 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47248 * 119.99661 * 3 2 1 7 7 C 1.37877 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99628 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00372 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.17429 * 179.97438 * 9 7 2 11 11 N 1.47482 * 87.93588 * 220.33324 * 10 9 7 12 12 C 1.46894 * 110.99943 * 138.70119 * 11 10 9 13 13 C 1.53000 * 109.46930 * 169.99867 * 12 11 10 14 14 C 1.52997 * 109.47260 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47415 * 175.00324 * 14 13 12 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 C 1.52997 * 109.47232 * 295.00198 * 14 13 12 20 20 C 1.47484 * 87.83314 * 27.01028 * 11 10 9 21 21 H 0.97005 * 119.99526 * 0.02562 * 1 2 3 22 22 H 1.08998 * 113.26038 * 312.95236 * 9 7 2 23 23 H 1.08995 * 113.47726 * 105.56401 * 10 9 7 24 24 H 1.09008 * 113.47334 * 335.10106 * 10 9 7 25 25 H 1.09001 * 109.47100 * 50.00664 * 12 11 10 26 26 H 1.08996 * 109.47763 * 289.99798 * 12 11 10 27 27 H 1.09000 * 109.47102 * 60.00468 * 13 12 11 28 28 H 1.09001 * 109.47254 * 300.00301 * 13 12 11 29 29 H 1.09002 * 109.47497 * 54.99973 * 14 13 12 30 30 H 1.08992 * 109.47063 * 59.99950 * 15 14 13 31 31 H 1.09004 * 109.46733 * 299.99664 * 15 14 13 32 32 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 33 33 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 34 34 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 36 36 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 37 37 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 38 38 H 1.09002 * 109.47153 * 299.99992 * 19 14 13 39 39 H 1.09001 * 109.47289 * 60.00075 * 19 14 13 40 40 H 1.08994 * 113.47401 * 87.75977 * 20 11 10 41 41 H 1.09000 * 113.47198 * 218.22286 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1495 -3.7438 0.0005 11 7 1.2075 -4.3584 -0.9534 12 6 1.9259 -5.0862 -2.0078 13 6 0.9310 -5.9107 -2.8271 14 6 1.6793 -6.6693 -3.9250 15 6 0.7052 -7.5887 -4.6644 16 6 1.4537 -8.3478 -5.7619 17 6 2.0614 -7.3493 -6.7490 18 6 3.0355 -6.4298 -6.0097 19 6 2.2866 -5.6704 -4.9120 20 6 0.8555 -2.9966 -1.3969 21 1 -0.4850 0.8401 -0.0004 22 1 0.4446 -2.5306 0.7332 23 1 2.1862 -4.2529 0.9636 24 1 3.1390 -3.5650 -0.4204 25 1 2.6615 -5.7505 -1.5543 26 1 2.4322 -4.3748 -2.6602 27 1 0.1953 -5.2465 -3.2807 28 1 0.4246 -6.6222 -2.1747 29 1 2.4737 -7.2664 -3.4773 30 1 -0.0892 -6.9917 -5.1121 31 1 0.2725 -8.3005 -3.9612 32 1 2.2479 -8.9450 -5.3138 33 1 0.7596 -9.0025 -6.2890 34 1 2.5943 -7.8899 -7.5312 35 1 1.2672 -6.7521 -7.1971 36 1 3.4682 -5.7181 -6.7128 37 1 3.8297 -7.0270 -5.5616 38 1 1.4922 -5.0733 -5.3597 39 1 2.9806 -5.0154 -4.3852 40 1 1.4996 -2.6185 -2.1908 41 1 -0.2045 -2.8724 -1.6182 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597203736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:09 Heat of formation + Delta-G solvation = -21.825386 kcal Electronic energy + Delta-G solvation = -17057.238935 eV Core-core repulsion = 14549.641741 eV Total energy + Delta-G solvation = -2507.597194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78895 -39.48676 -35.15785 -34.19887 -31.64769 -30.93796 -28.26760 -26.57910 -25.82465 -23.74767 -22.89795 -21.42378 -20.60131 -20.46179 -18.62480 -16.84272 -16.44459 -16.36039 -15.75879 -15.63750 -15.18244 -14.94658 -14.83902 -13.97001 -13.90517 -13.66908 -13.24454 -13.03488 -12.94528 -12.85410 -12.78113 -12.37975 -12.29480 -11.98371 -11.91353 -11.62799 -11.50938 -11.31709 -11.17171 -10.93152 -10.81044 -10.71619 -10.49556 -9.66431 -8.15890 -6.27840 1.42493 1.44076 1.52127 2.41957 3.13194 3.28715 3.76691 3.83487 3.91463 4.02627 4.24653 4.27972 4.35755 4.43682 4.52138 4.56116 4.59730 4.64622 4.67150 4.74446 4.78744 4.81959 4.86622 4.94643 4.97364 5.13133 5.18443 5.20666 5.25754 5.28287 5.35324 5.37542 5.42545 5.49938 5.57678 5.61121 5.65755 5.83867 6.28883 6.41927 6.81252 7.40761 8.93884 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.038985 B = 0.004499 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.055310 B = 6221.738653 C = 6532.434851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.020 3.980 10 C 0.008 3.992 11 N -0.486 5.486 12 C 0.021 3.979 13 C -0.096 4.096 14 C -0.078 4.078 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.118 4.118 20 C 0.020 3.980 21 H 0.263 0.737 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.868 -14.546 -11.722 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.120 4.120 11 N -0.208 5.208 12 C -0.107 4.107 13 C -0.134 4.134 14 C -0.097 4.097 15 C -0.150 4.150 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.110 4.110 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.203 -14.936 -11.517 19.323 hybrid contribution 0.679 1.665 -0.171 1.806 sum 4.882 -13.272 -11.688 18.346 Atomic orbital electron populations 1.70096 1.07600 1.27703 1.50710 1.25849 0.95619 1.02775 0.94200 0.85599 0.78365 0.78571 0.79066 1.19421 1.20942 1.19261 1.21359 0.93017 0.91499 1.51335 0.92256 1.20061 0.94574 0.92192 0.93119 1.23817 0.95431 0.95811 0.96990 1.68760 1.28002 1.12711 1.11371 1.22740 0.96629 0.97678 0.93673 1.21425 0.97409 0.98082 0.96455 1.21088 0.97823 0.96191 0.94549 1.21565 0.97647 0.98066 0.97759 1.21520 0.99828 0.97617 0.96352 1.21544 0.98680 0.97499 0.97923 1.21532 0.98109 0.98529 0.97251 1.21647 0.99445 0.97700 0.96770 1.23785 0.98748 0.88702 0.99743 0.92801 0.95190 0.90864 0.92188 0.90829 0.94469 0.93730 0.91758 0.90840 0.92694 0.91674 0.91619 0.91185 0.91010 0.92528 0.91923 0.91635 0.93077 0.92944 0.93410 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.87 13.26 21.45 0.28 -54.58 16 2 C 0.01 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.53 -29.77 8.82 25.60 0.23 -29.54 16 8 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 9 C 0.02 1.03 3.77 -11.20 -0.04 0.99 16 10 C 0.01 0.36 7.25 83.57 0.61 0.96 16 11 N -0.49 -20.13 6.33 -927.87 -5.88 -26.01 16 12 C 0.02 0.71 4.57 86.30 0.39 1.10 16 13 C -0.10 -2.74 5.01 30.59 0.15 -2.59 16 14 C -0.08 -1.75 2.19 -10.79 -0.02 -1.77 16 15 C -0.11 -2.19 5.20 30.60 0.16 -2.03 16 16 C -0.12 -1.84 5.92 30.59 0.18 -1.66 16 17 C -0.12 -1.91 5.92 30.59 0.18 -1.73 16 18 C -0.12 -2.13 5.93 30.61 0.18 -1.95 16 19 C -0.12 -2.69 4.96 30.61 0.15 -2.54 16 20 C 0.02 0.94 7.28 83.57 0.61 1.55 16 21 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 22 H 0.03 1.75 8.11 -2.39 -0.02 1.73 16 23 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 24 H 0.06 2.48 7.87 -2.38 -0.02 2.46 16 25 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 26 H 0.04 1.28 5.73 -2.39 -0.01 1.27 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.05 1.31 6.57 -2.39 -0.02 1.29 16 40 H 0.05 2.30 7.37 -2.39 -0.02 2.28 16 41 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -59.77 316.56 0.62 -59.14 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.95 Total: 13.85 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 3.24 Total: -37.91 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -5.59 Total: -80.59 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -59.77 0.62 -59.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.317 kcal (2) G-P(sol) polarization free energy of solvation -59.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds