Wall clock time and date at job start Sun Mar 29 2020 22:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 C 1.52999 * 109.46945 * 119.99838 * 2 1 3 5 5 C 1.50698 * 109.47464 * 300.00202 * 4 2 1 6 6 H 1.08003 * 119.99735 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00424 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00019 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00192 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47126 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47085 * 119.99814 * 9 7 5 12 12 H 1.48503 * 109.47067 * 239.99590 * 9 7 5 13 13 C 1.52997 * 109.46810 * 239.99539 * 2 1 3 14 14 N 1.46903 * 109.47160 * 67.46149 * 13 2 1 15 15 C 1.47170 * 110.99746 * 317.09908 * 14 13 2 16 16 C 1.52990 * 108.58819 * 199.59347 * 15 14 13 17 17 C 1.52971 * 109.63187 * 305.86477 * 16 15 14 18 18 H 1.09005 * 115.51457 * 231.87005 * 17 16 15 19 19 C 1.51739 * 115.58451 * 89.41442 * 17 16 15 20 20 C 1.52363 * 60.15285 * 249.27246 * 19 17 16 21 21 H 1.09003 * 116.26439 * 253.56731 * 20 19 17 22 22 C 1.46738 * 111.00017 * 80.19260 * 14 13 2 23 23 H 1.09004 * 109.47410 * 273.72724 * 1 2 3 24 24 H 1.09004 * 109.47090 * 33.72320 * 1 2 3 25 25 H 1.08995 * 109.47428 * 153.72177 * 1 2 3 26 26 H 1.08991 * 109.47185 * 186.36615 * 3 2 1 27 27 H 1.09004 * 109.46744 * 306.36317 * 3 2 1 28 28 H 1.08997 * 109.47146 * 66.36143 * 3 2 1 29 29 H 1.08999 * 109.47149 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.46951 * 59.99868 * 4 2 1 31 31 H 0.97004 * 120.00060 * 0.02562 * 8 7 5 32 32 H 1.09006 * 109.46854 * 187.45260 * 13 2 1 33 33 H 1.08994 * 109.47591 * 307.45697 * 13 2 1 34 34 H 1.09001 * 109.61483 * 319.32179 * 15 14 13 35 35 H 1.08998 * 109.62264 * 79.85698 * 15 14 13 36 36 H 1.09004 * 109.44365 * 185.81785 * 16 15 14 37 37 H 1.09000 * 109.42097 * 65.90290 * 16 15 14 38 38 H 1.09009 * 117.67348 * 141.77418 * 19 17 16 39 39 H 1.08997 * 117.13465 * 357.00691 * 19 17 16 40 40 H 1.08996 * 109.30581 * 300.48179 * 22 14 13 41 41 H 1.08997 * 109.30061 * 60.07631 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8711 -0.4816 3.7320 8 7 2.6272 -1.5508 3.8527 9 14 1.2489 0.3994 5.2572 10 1 0.4244 1.5664 4.8530 11 1 0.4241 -0.5337 6.0660 12 1 2.4042 0.8662 6.0650 13 6 2.0399 -0.7213 -1.2492 14 7 1.7026 0.0671 -2.4419 15 6 0.3295 0.5900 -2.3574 16 6 -0.1386 0.9609 -3.7659 17 6 0.8683 1.9177 -4.4069 18 1 0.4478 2.8354 -4.8182 19 6 1.9965 1.2602 -5.1798 20 6 2.2929 1.9776 -3.8687 21 1 2.7984 2.9400 -3.9489 22 6 2.6559 1.1662 -2.6327 23 1 -0.3634 0.0668 1.0255 24 1 -0.3633 0.8548 -0.5706 25 1 -0.3634 -0.9214 -0.4549 26 1 3.1240 1.4445 -0.1139 27 1 1.5867 1.9881 -0.8276 28 1 1.7727 1.9224 0.9414 29 1 3.1300 -0.7216 1.2491 30 1 1.6766 -1.7489 1.2493 31 1 2.9506 -2.0081 3.0607 32 1 3.1218 -0.8382 -1.1850 33 1 1.5718 -1.7032 -1.3183 34 1 -0.3281 -0.1739 -1.9426 35 1 0.3134 1.4750 -1.7215 36 1 -1.1135 1.4452 -3.7086 37 1 -0.2172 0.0579 -4.3713 38 1 2.3252 1.7398 -6.1019 39 1 2.0322 0.1708 -5.1771 40 1 2.6373 1.8154 -1.7573 41 1 3.6583 0.7563 -2.7561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597223839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:39 Heat of formation + Delta-G solvation = 52.845332 kcal Electronic energy + Delta-G solvation = -18189.029426 eV Core-core repulsion = 15684.670198 eV Total energy + Delta-G solvation = -2504.359229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41966 -37.38883 -33.89371 -31.86902 -31.40212 -27.90139 -27.06316 -26.42095 -24.33519 -22.80205 -21.92810 -21.17363 -18.62874 -18.32681 -16.38215 -16.13811 -15.38994 -14.81547 -14.43100 -14.03683 -13.70887 -13.48220 -13.25414 -12.67859 -12.40377 -11.90210 -11.82422 -11.63587 -11.44577 -11.10244 -11.00237 -10.74786 -10.65262 -10.56453 -10.43665 -10.13008 -9.94485 -9.81312 -9.75085 -9.53027 -9.39125 -8.55420 -8.29384 -7.52571 -6.31445 -3.99585 3.43865 3.47571 3.60070 3.82350 4.30740 4.55663 4.73611 4.95396 5.06240 5.22225 5.41467 5.44025 5.46709 5.50952 5.60046 5.73864 5.79978 5.83647 5.96079 5.98480 6.05767 6.12283 6.15029 6.21308 6.26711 6.31430 6.33830 6.36750 6.45481 6.58933 6.63039 6.94843 7.04695 7.20768 7.38345 7.43338 7.52766 7.57354 8.26679 8.50884 8.93198 9.71081 11.08381 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.048945 B = 0.005815 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.938047 B = 4814.245553 C = 4890.883545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.143 4.143 4 C 0.022 3.978 5 C -0.589 4.589 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.070 2.930 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.061 3.939 14 N -0.529 5.529 15 C 0.031 3.969 16 C -0.090 4.090 17 C -0.147 4.147 18 H 0.094 0.906 19 C -0.171 4.171 20 C -0.144 4.144 21 H 0.097 0.903 22 C 0.045 3.955 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.004 0.996 30 H 0.006 0.994 31 H 0.269 0.731 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 6.205 -14.742 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.082 4.082 3 C -0.199 4.199 4 C -0.015 4.015 5 C -0.627 4.627 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.252 5.252 15 C -0.096 4.096 16 C -0.127 4.127 17 C -0.166 4.166 18 H 0.112 0.888 19 C -0.208 4.208 20 C -0.163 4.163 21 H 0.115 0.885 22 C -0.082 4.082 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.022 0.978 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.119 5.851 -13.520 15.059 hybrid contribution 0.091 0.537 -1.039 1.173 sum -3.027 6.388 -14.559 16.185 Atomic orbital electron populations 1.22681 0.95675 0.99801 1.02913 1.21042 0.95425 0.95468 0.96292 1.22313 0.99546 0.96750 1.01296 1.19220 0.95239 0.95098 0.91955 1.22066 1.34506 1.14247 0.91919 0.92933 1.25773 0.95374 0.96594 1.01361 1.70715 1.32783 1.18411 1.33485 0.83530 0.76058 0.75232 0.75275 1.21623 1.21466 1.21501 1.22412 1.00350 0.96499 0.87414 1.62487 1.02058 1.22240 1.38426 1.23219 0.91168 0.99968 0.95244 1.21263 0.96646 0.97932 0.96905 1.21952 0.90294 1.00459 1.03862 0.88800 1.22745 1.03234 1.00534 0.94262 1.21990 0.98526 1.00341 0.95416 0.88469 1.22211 0.96010 0.93332 0.96648 0.91345 0.92468 0.93905 0.93676 0.93129 0.91509 0.97780 0.97602 0.92097 0.91714 0.91275 0.89051 0.92480 0.91921 0.91504 0.89957 0.88199 0.90280 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 6.92 37.16 0.26 -2.60 16 2 C -0.08 -1.58 0.52 -154.51 -0.08 -1.66 16 3 C -0.14 -2.66 6.37 37.16 0.24 -2.42 16 4 C 0.02 0.56 3.35 -27.88 -0.09 0.46 16 5 C -0.59 -16.11 7.19 -34.44 -0.25 -16.36 16 6 H 0.05 1.42 6.00 -52.48 -0.31 1.11 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.05 13.65 55.43 0.76 -27.29 16 9 Si 1.07 25.38 29.90 -169.99 -5.08 20.30 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.06 1.06 4.89 -3.82 -0.02 1.04 16 14 N -0.53 -8.05 4.66 -235.03 -1.09 -9.14 16 15 C 0.03 0.44 3.29 -3.68 -0.01 0.43 16 16 C -0.09 -1.10 6.07 -26.75 -0.16 -1.26 16 17 C -0.15 -1.74 6.22 -91.58 -0.57 -2.31 16 18 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.17 -1.99 9.63 -27.70 -0.27 -2.26 16 20 C -0.14 -1.79 6.15 -91.64 -0.56 -2.36 16 21 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 22 C 0.05 0.65 4.85 -4.30 -0.02 0.63 16 23 H 0.07 1.45 6.25 -51.93 -0.32 1.13 16 24 H 0.06 0.93 4.49 -51.93 -0.23 0.70 16 25 H 0.04 0.75 6.63 -51.93 -0.34 0.40 16 26 H 0.04 0.83 7.39 -51.93 -0.38 0.45 16 27 H 0.05 0.83 3.69 -51.93 -0.19 0.64 16 28 H 0.07 1.39 6.43 -51.93 -0.33 1.05 16 29 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 30 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 31 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 32 H 0.06 1.15 7.87 -51.93 -0.41 0.74 16 33 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 34 H 0.09 1.34 4.97 -51.93 -0.26 1.09 16 35 H 0.06 0.87 3.98 -51.93 -0.21 0.66 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 38 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.08 1.19 3.31 -51.93 -0.17 1.02 16 41 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 LS Contribution 289.45 15.07 4.36 4.36 Total: -1.00 -28.95 289.45 -9.15 -38.11 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.46 Total: 2.08 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: -1.64 Total: -28.41 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.34 Total: -36.44 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.95 -9.15 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597223839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.951 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds