Wall clock time and date at job start Sun Mar 29 2020 22:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 C 1.52999 * 109.46945 * 119.99838 * 2 1 3 5 5 C 1.50698 * 109.47464 * 300.00202 * 4 2 1 6 6 H 1.08003 * 119.99735 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00424 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00019 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00192 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47126 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47085 * 119.99814 * 9 7 5 12 12 H 1.48503 * 109.47067 * 239.99590 * 9 7 5 13 13 C 1.52997 * 109.46810 * 239.99539 * 2 1 3 14 14 N 1.46903 * 109.47160 * 67.46149 * 13 2 1 15 15 C 1.47170 * 110.99746 * 317.09908 * 14 13 2 16 16 C 1.52990 * 108.58819 * 199.59347 * 15 14 13 17 17 C 1.52971 * 109.63187 * 305.86477 * 16 15 14 18 18 H 1.09005 * 115.51457 * 231.87005 * 17 16 15 19 19 C 1.51739 * 115.58451 * 89.41442 * 17 16 15 20 20 C 1.52363 * 60.15285 * 249.27246 * 19 17 16 21 21 H 1.09003 * 116.26439 * 253.56731 * 20 19 17 22 22 C 1.46738 * 111.00017 * 80.19260 * 14 13 2 23 23 H 1.09004 * 109.47410 * 273.72724 * 1 2 3 24 24 H 1.09004 * 109.47090 * 33.72320 * 1 2 3 25 25 H 1.08995 * 109.47428 * 153.72177 * 1 2 3 26 26 H 1.08991 * 109.47185 * 186.36615 * 3 2 1 27 27 H 1.09004 * 109.46744 * 306.36317 * 3 2 1 28 28 H 1.08997 * 109.47146 * 66.36143 * 3 2 1 29 29 H 1.08999 * 109.47149 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.46951 * 59.99868 * 4 2 1 31 31 H 0.97004 * 120.00060 * 0.02562 * 8 7 5 32 32 H 1.09006 * 109.46854 * 187.45260 * 13 2 1 33 33 H 1.08994 * 109.47591 * 307.45697 * 13 2 1 34 34 H 1.09001 * 109.61483 * 319.32179 * 15 14 13 35 35 H 1.08998 * 109.62264 * 79.85698 * 15 14 13 36 36 H 1.09004 * 109.44365 * 185.81785 * 16 15 14 37 37 H 1.09000 * 109.42097 * 65.90290 * 16 15 14 38 38 H 1.09009 * 117.67348 * 141.77418 * 19 17 16 39 39 H 1.08997 * 117.13465 * 357.00691 * 19 17 16 40 40 H 1.08996 * 109.30581 * 300.48179 * 22 14 13 41 41 H 1.08997 * 109.30061 * 60.07631 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8711 -0.4816 3.7320 8 7 2.6272 -1.5508 3.8527 9 14 1.2489 0.3994 5.2572 10 1 0.4244 1.5664 4.8530 11 1 0.4241 -0.5337 6.0660 12 1 2.4042 0.8662 6.0650 13 6 2.0399 -0.7213 -1.2492 14 7 1.7026 0.0671 -2.4419 15 6 0.3295 0.5900 -2.3574 16 6 -0.1386 0.9609 -3.7659 17 6 0.8683 1.9177 -4.4069 18 1 0.4478 2.8354 -4.8182 19 6 1.9965 1.2602 -5.1798 20 6 2.2929 1.9776 -3.8687 21 1 2.7984 2.9400 -3.9489 22 6 2.6559 1.1662 -2.6327 23 1 -0.3634 0.0668 1.0255 24 1 -0.3633 0.8548 -0.5706 25 1 -0.3634 -0.9214 -0.4549 26 1 3.1240 1.4445 -0.1139 27 1 1.5867 1.9881 -0.8276 28 1 1.7727 1.9224 0.9414 29 1 3.1300 -0.7216 1.2491 30 1 1.6766 -1.7489 1.2493 31 1 2.9506 -2.0081 3.0607 32 1 3.1218 -0.8382 -1.1850 33 1 1.5718 -1.7032 -1.3183 34 1 -0.3281 -0.1739 -1.9426 35 1 0.3134 1.4750 -1.7215 36 1 -1.1135 1.4452 -3.7086 37 1 -0.2172 0.0579 -4.3713 38 1 2.3252 1.7398 -6.1019 39 1 2.0322 0.1708 -5.1771 40 1 2.6373 1.8154 -1.7573 41 1 3.6583 0.7563 -2.7561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597223839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:38 Heat of formation + Delta-G solvation = 36.212479 kcal Electronic energy + Delta-G solvation = -18189.750681 eV Core-core repulsion = 15684.670198 eV Total energy + Delta-G solvation = -2505.080483 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.67553 -38.66756 -35.66516 -33.64056 -32.50638 -29.28142 -28.75968 -28.08287 -25.77188 -24.53328 -23.23003 -22.11977 -20.25229 -19.54394 -18.41660 -17.19514 -16.69513 -16.20552 -15.74865 -15.58324 -15.37798 -14.89294 -14.79638 -14.04194 -13.77777 -13.54319 -13.27491 -12.99700 -12.88282 -12.56600 -12.48502 -12.38463 -12.25758 -11.98995 -11.93565 -11.72927 -11.44712 -11.28029 -10.99196 -10.84708 -10.57596 -10.51210 -10.46121 -8.87867 -8.60953 -6.29718 1.50881 1.60127 1.75267 2.57162 2.86398 3.10176 3.21160 3.76113 3.91102 3.97309 4.03747 4.09196 4.14941 4.33248 4.44038 4.49657 4.60661 4.65760 4.69204 4.75647 4.77176 4.86348 4.88569 4.99005 5.02002 5.04768 5.06726 5.15566 5.22948 5.27281 5.32482 5.33801 5.40548 5.48326 5.56939 5.66438 6.08556 6.18611 6.25071 6.26995 6.65593 7.49783 8.78286 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.048945 B = 0.005815 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.938047 B = 4814.245553 C = 4890.883545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.133 4.133 4 C 0.026 3.974 5 C -0.588 4.588 6 H 0.056 0.944 7 C -0.045 4.045 8 N -0.946 5.946 9 Si 1.117 2.883 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.070 3.930 14 N -0.525 5.525 15 C 0.029 3.971 16 C -0.087 4.087 17 C -0.145 4.145 18 H 0.113 0.887 19 C -0.165 4.165 20 C -0.154 4.154 21 H 0.112 0.888 22 C 0.044 3.956 23 H 0.038 0.962 24 H 0.086 0.914 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.043 0.957 29 H -0.021 1.021 30 H -0.019 1.019 31 H 0.253 0.747 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 8.061 -16.247 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.189 4.189 4 C -0.012 4.012 5 C -0.626 4.626 6 H 0.074 0.926 7 C -0.241 4.241 8 N -0.585 5.585 9 Si 0.939 3.061 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.058 4.058 14 N -0.248 5.248 15 C -0.098 4.098 16 C -0.124 4.124 17 C -0.164 4.164 18 H 0.131 0.869 19 C -0.202 4.202 20 C -0.172 4.172 21 H 0.130 0.870 22 C -0.084 4.084 23 H 0.057 0.943 24 H 0.104 0.896 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.062 0.938 29 H -0.003 1.003 30 H -0.001 1.001 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.338 7.715 -15.057 17.465 hybrid contribution 0.487 -0.065 -0.640 0.807 sum -3.851 7.651 -15.697 17.881 Atomic orbital electron populations 1.22657 0.94510 1.01628 1.01524 1.20978 0.96331 0.95726 0.94728 1.22249 0.99562 0.95981 1.01146 1.19149 0.93543 0.94258 0.94215 1.22406 1.33490 1.13967 0.92754 0.92576 1.27287 0.95051 0.96603 1.05201 1.70858 1.34936 1.20007 1.32694 0.82927 0.76094 0.74983 0.72048 1.19305 1.20810 1.20877 1.22210 0.99650 0.96558 0.87385 1.62536 1.02994 1.22835 1.36395 1.23217 0.90323 0.99394 0.96895 1.21250 0.97711 0.98307 0.95179 1.22063 0.89825 1.01037 1.03449 0.86914 1.22747 1.03035 0.99821 0.94615 1.21989 0.99577 1.00791 0.94840 0.86961 1.22203 0.95677 0.92925 0.97562 0.94331 0.89595 0.93046 0.93983 0.90283 0.93830 1.00311 1.00068 0.93739 0.92590 0.91693 0.89470 0.93045 0.89981 0.91608 0.88110 0.89591 0.91071 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 6.92 71.98 0.50 -4.82 16 2 C -0.08 -2.99 0.52 -52.18 -0.03 -3.01 16 3 C -0.13 -4.88 6.37 71.98 0.46 -4.42 16 4 C 0.03 1.34 3.35 29.85 0.10 1.44 16 5 C -0.59 -32.78 7.19 25.60 0.18 -32.59 16 6 H 0.06 3.05 6.00 -2.91 -0.02 3.03 16 7 C -0.05 -2.62 5.46 84.65 0.46 -2.15 16 8 N -0.95 -59.57 13.65 21.45 0.29 -59.28 16 9 Si 1.12 51.01 29.90 68.60 2.05 53.06 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.07 2.45 4.89 86.30 0.42 2.87 16 14 N -0.52 -15.20 4.66 -897.49 -4.18 -19.38 16 15 C 0.03 0.74 3.29 86.25 0.28 1.03 16 16 C -0.09 -1.84 6.07 30.58 0.19 -1.65 16 17 C -0.15 -2.91 6.22 -11.42 -0.07 -2.98 16 18 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 19 C -0.17 -3.35 9.63 29.97 0.29 -3.06 16 20 C -0.15 -3.37 6.15 -11.45 -0.07 -3.44 16 21 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 22 C 0.04 1.17 4.85 86.08 0.42 1.59 16 23 H 0.04 1.62 6.25 -2.39 -0.01 1.60 16 24 H 0.09 2.62 4.49 -2.38 -0.01 2.61 16 25 H 0.05 1.75 6.63 -2.39 -0.02 1.74 16 26 H 0.04 1.54 7.39 -2.39 -0.02 1.52 16 27 H 0.08 2.46 3.69 -2.38 -0.01 2.45 16 28 H 0.04 1.78 6.43 -2.39 -0.02 1.77 16 29 H -0.02 -1.20 8.01 -2.39 -0.02 -1.22 16 30 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 31 H 0.25 16.23 7.22 -92.71 -0.67 15.56 16 32 H 0.06 2.03 7.87 -2.38 -0.02 2.01 16 33 H 0.06 2.30 7.94 -2.39 -0.02 2.28 16 34 H 0.09 2.36 4.97 -2.39 -0.01 2.35 16 35 H 0.05 1.41 3.98 -2.39 -0.01 1.40 16 36 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.07 1.43 8.05 -2.39 -0.02 1.41 16 38 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 2.02 3.31 -2.39 -0.01 2.01 16 41 H 0.06 1.79 8.06 -2.39 -0.02 1.77 16 Total: -1.00 -63.17 289.45 2.41 -60.76 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.11 Total: 16.04 kcal Atomic # 6 Polarization: -54.34 SS G_CDS: 3.13 Total: -51.21 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -3.89 Total: -78.66 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Total: -63.17 2.41 -60.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597223839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.975 kcal (2) G-P(sol) polarization free energy of solvation -63.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds