Wall clock time and date at job start Sun Mar 29 2020 22:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46910 * 120.00333 * 9 7 5 12 12 H 1.48502 * 109.47120 * 240.00671 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.54638 * 111.03853 * 287.02428 * 16 15 14 18 18 C 1.51102 * 104.72859 * 217.33686 * 17 16 15 19 19 C 1.30526 * 111.10039 * 16.43290 * 18 17 16 20 20 C 1.51093 * 111.10856 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 22 22 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 23 23 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 26 26 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 27 27 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 28 28 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 29 29 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 31 31 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 32 32 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 33 33 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 34 34 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 35 35 H 1.09000 * 110.91787 * 51.03039 * 16 15 14 36 36 H 1.09002 * 110.38249 * 336.14672 * 17 16 15 37 37 H 1.08992 * 110.38908 * 98.51969 * 17 16 15 38 38 H 1.07994 * 124.45270 * 196.45390 * 18 17 16 39 39 H 1.08012 * 124.44298 * 180.02562 * 19 18 17 40 40 H 1.09004 * 110.38759 * 224.75530 * 20 19 18 41 41 H 1.09001 * 110.39102 * 102.37515 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 0.4245 1.5661 -4.8530 11 1 2.4045 0.8658 -6.0650 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 6 2.2307 1.3985 5.0869 18 6 2.3738 1.5486 6.5836 19 6 2.1731 0.4110 7.1913 20 6 1.8634 -0.6875 6.2013 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9562 -0.8901 26 1 1.6767 1.9563 0.8899 27 1 3.1300 -0.7218 -1.2489 28 1 1.6767 -1.7491 -1.2491 29 1 2.8618 -1.8826 -4.7335 30 1 3.1300 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2494 32 1 1.8198 0.9437 2.4401 33 1 1.6586 -1.7220 3.6874 34 1 3.1116 -0.6939 3.6870 35 1 0.4151 0.2047 4.8236 36 1 3.2119 1.3637 4.6133 37 1 1.6397 2.2178 4.6779 38 1 2.6107 2.4754 7.0848 39 1 2.2221 0.2731 8.2615 40 1 1.0219 -1.2865 6.5496 41 1 2.7398 -1.3166 6.0455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598991760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:43 Heat of formation + Delta-G solvation = -10.068608 kcal Electronic energy + Delta-G solvation = -16975.417904 eV Core-core repulsion = 14468.330522 eV Total energy + Delta-G solvation = -2507.087382 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.08744 -37.38183 -34.22166 -32.20287 -29.70805 -28.27980 -26.92979 -26.29824 -25.45722 -23.67198 -22.00697 -20.08763 -18.87579 -17.81930 -16.27175 -16.24326 -15.85247 -14.71760 -14.33772 -14.00581 -13.69393 -13.19388 -12.83351 -12.58676 -12.55190 -12.26234 -11.99059 -11.81243 -11.38153 -11.26925 -11.12883 -10.92970 -10.87350 -10.73048 -10.68667 -10.46207 -10.22048 -10.06799 -9.65329 -9.03170 -8.98704 -8.79097 -8.30071 -8.04169 -5.94386 -3.94342 2.10668 3.33739 3.41521 3.45171 4.31573 4.50755 4.53382 4.65323 5.03850 5.13159 5.27799 5.41489 5.45390 5.61815 5.63061 5.68703 5.76533 5.77040 5.83953 5.88786 6.00794 6.04881 6.26530 6.31616 6.37377 6.38859 6.54589 6.69783 6.74167 6.82419 6.86041 7.23915 7.26945 7.29515 7.45027 7.71456 7.75255 7.88622 8.06265 8.50888 9.11384 9.68436 11.17358 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.060942 B = 0.004111 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.340625 B = 6810.037513 C = 6956.723208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.069 3.931 14 N -0.687 5.687 15 C 0.067 3.933 16 C -0.090 4.090 17 C -0.101 4.101 18 C -0.166 4.166 19 C -0.171 4.171 20 C -0.097 4.097 21 H 0.042 0.958 22 H 0.054 0.946 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.012 0.988 28 H 0.015 0.985 29 H 0.258 0.742 30 H 0.022 0.978 31 H 0.065 0.935 32 H 0.337 0.663 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.069 0.931 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 3.908 18.574 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.059 4.059 14 N -0.318 5.318 15 C -0.062 4.062 16 C -0.109 4.109 17 C -0.138 4.138 18 C -0.184 4.184 19 C -0.189 4.189 20 C -0.134 4.134 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.088 0.912 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.292 3.464 18.428 18.795 hybrid contribution 0.794 0.624 -0.866 1.330 sum -0.499 4.088 17.562 18.038 Atomic orbital electron populations 1.21596 0.95009 1.00555 1.00142 1.20629 0.95870 0.94982 0.94437 1.21769 0.99654 0.96804 1.00399 1.19129 0.95874 0.95214 0.90226 1.21287 1.30600 1.11884 0.90608 0.92223 1.25023 0.95429 0.95138 0.99066 1.69978 1.37407 1.23264 1.23152 0.86610 0.78586 0.79751 0.83505 1.19763 1.21211 1.21158 1.22110 0.96255 0.98131 0.89426 1.60580 1.63647 1.06406 1.01207 1.21943 0.96564 0.98390 0.89350 1.22086 1.00907 0.94405 0.93478 1.21495 1.00524 0.98015 0.93769 1.23313 1.00782 0.98133 0.96150 1.23275 1.01308 0.95370 0.98927 1.21404 1.01300 0.97205 0.93503 0.93885 0.92728 0.94202 0.94149 0.91718 0.94821 0.96948 0.96689 0.93242 0.95990 0.91621 0.84355 0.91148 0.95641 0.89349 0.90906 0.90972 0.86214 0.86204 0.91196 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 2 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 3 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.94 7.65 -34.44 -0.26 -14.20 16 6 H 0.06 1.60 5.68 -52.49 -0.30 1.31 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 C 0.07 1.22 4.65 -3.82 -0.02 1.21 16 14 N -0.69 -10.08 5.71 -113.78 -0.65 -10.73 16 15 C 0.07 0.84 5.04 -3.82 -0.02 0.82 16 16 C -0.09 -0.97 3.36 -88.89 -0.30 -1.27 16 17 C -0.10 -1.03 5.86 -26.83 -0.16 -1.19 16 18 C -0.17 -1.56 10.78 -35.70 -0.38 -1.94 16 19 C -0.17 -1.56 10.77 -35.70 -0.38 -1.94 16 20 C -0.10 -0.92 6.38 -26.82 -0.17 -1.09 16 21 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 22 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 26 H 0.03 0.54 6.57 -51.93 -0.34 0.19 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.34 4.77 6.28 -39.29 -0.25 4.52 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.32 7.92 -51.93 -0.41 -0.09 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.77 7.74 -51.93 -0.40 0.37 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.70 7.89 -51.93 -0.41 0.29 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -29.04 319.18 -8.93 -37.97 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.40 Total: 0.40 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -1.41 Total: -22.83 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.09 Total: -37.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.04 -8.93 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598991760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.900 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds