Wall clock time and date at job start Sun Mar 29 2020 22:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00228 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46685 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46910 * 120.00333 * 9 7 5 12 12 H 1.48502 * 109.47120 * 240.00671 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.54638 * 111.03853 * 287.02428 * 16 15 14 18 18 C 1.51102 * 104.72859 * 217.33686 * 17 16 15 19 19 C 1.30526 * 111.10039 * 16.43290 * 18 17 16 20 20 C 1.51093 * 111.10856 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 22 22 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 23 23 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 26 26 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 27 27 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 28 28 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 29 29 H 0.97002 * 120.00555 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 31 31 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 32 32 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 33 33 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 34 34 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 35 35 H 1.09000 * 110.91787 * 51.03039 * 16 15 14 36 36 H 1.09002 * 110.38249 * 336.14672 * 17 16 15 37 37 H 1.08992 * 110.38908 * 98.51969 * 17 16 15 38 38 H 1.07994 * 124.45270 * 196.45390 * 18 17 16 39 39 H 1.08012 * 124.44298 * 180.02562 * 19 18 17 40 40 H 1.09004 * 110.38759 * 224.75530 * 20 19 18 41 41 H 1.09001 * 110.39102 * 102.37515 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2491 0.3991 -5.2572 10 1 0.4245 1.5661 -4.8530 11 1 2.4045 0.8658 -6.0650 12 1 0.4243 -0.5341 -6.0660 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.4922 0.0535 4.8955 17 6 2.2307 1.3985 5.0869 18 6 2.3738 1.5486 6.5836 19 6 2.1731 0.4110 7.1913 20 6 1.8634 -0.6875 6.2013 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9562 -0.8901 26 1 1.6767 1.9563 0.8899 27 1 3.1300 -0.7218 -1.2489 28 1 1.6767 -1.7491 -1.2491 29 1 2.8618 -1.8826 -4.7335 30 1 3.1300 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2494 32 1 1.8198 0.9437 2.4401 33 1 1.6586 -1.7220 3.6874 34 1 3.1116 -0.6939 3.6870 35 1 0.4151 0.2047 4.8236 36 1 3.2119 1.3637 4.6133 37 1 1.6397 2.2178 4.6779 38 1 2.6107 2.4754 7.0848 39 1 2.2221 0.2731 8.2615 40 1 1.0219 -1.2865 6.5496 41 1 2.7398 -1.3166 6.0455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598991760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:43 Heat of formation + Delta-G solvation = -25.805073 kcal Electronic energy + Delta-G solvation = -16976.100288 eV Core-core repulsion = 14468.330522 eV Total energy + Delta-G solvation = -2507.769766 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99039 -38.85123 -35.66374 -34.16140 -30.79116 -29.05229 -28.86872 -27.88718 -26.84541 -25.15937 -23.60910 -20.96799 -19.63814 -19.40622 -18.33179 -17.21120 -16.86394 -16.56494 -15.72068 -15.35833 -15.11986 -14.65712 -14.22908 -13.94520 -13.80082 -13.57634 -13.41892 -12.96800 -12.82886 -12.68340 -12.52162 -12.29249 -12.21958 -12.11938 -12.07311 -11.98047 -11.80543 -11.55789 -11.36603 -10.85470 -10.69982 -10.50956 -9.74163 -9.28544 -8.13819 -6.20864 1.40545 1.41478 1.41663 1.53838 2.44081 3.20133 3.24687 3.74866 3.79514 4.08957 4.16440 4.24271 4.37866 4.42399 4.49301 4.60743 4.71373 4.79677 4.81660 4.87423 4.92657 4.96163 4.99611 5.08684 5.15175 5.15846 5.22102 5.22393 5.45184 5.52115 5.54357 5.58972 5.65355 5.68477 5.87700 5.93211 6.05711 6.11794 6.37587 6.55785 6.94550 7.46566 8.98824 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.060942 B = 0.004111 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.340625 B = 6810.037513 C = 6956.723208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.056 4.056 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.081 3.919 14 N -0.682 5.682 15 C 0.069 3.931 16 C -0.086 4.086 17 C -0.102 4.102 18 C -0.175 4.175 19 C -0.172 4.172 20 C -0.097 4.097 21 H 0.067 0.933 22 H 0.038 0.962 23 H 0.030 0.970 24 H 0.036 0.964 25 H 0.047 0.953 26 H 0.067 0.933 27 H -0.017 1.017 28 H -0.016 1.016 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.056 0.944 32 H 0.343 0.657 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.077 0.923 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 5.338 19.891 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.057 4.057 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.048 4.048 14 N -0.314 5.314 15 C -0.060 4.060 16 C -0.105 4.105 17 C -0.139 4.139 18 C -0.193 4.193 19 C -0.190 4.190 20 C -0.135 4.135 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.096 0.904 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.030 4.910 19.765 20.466 hybrid contribution 1.037 0.138 -1.229 1.613 sum -0.994 5.048 18.536 19.237 Atomic orbital electron populations 1.21500 0.94252 1.00091 1.00537 1.20505 0.96361 0.95636 0.93164 1.21684 0.99427 0.95618 1.01219 1.19014 0.93928 0.94109 0.92777 1.21657 1.30117 1.11917 0.91427 0.91535 1.25936 0.95715 0.95925 1.02622 1.70117 1.38933 1.24992 1.23978 0.85512 0.78122 0.78818 0.79305 1.18404 1.20803 1.20847 1.21820 0.95708 0.97568 0.89705 1.60519 1.63495 1.06620 1.00810 1.21975 0.96642 0.98409 0.88975 1.22001 1.00488 0.94837 0.93172 1.21495 1.00175 0.97623 0.94645 1.23447 1.01217 0.98995 0.95610 1.23461 1.00812 0.94964 0.99769 1.21416 1.01683 0.97439 0.92935 0.91369 0.94244 0.95127 0.94497 0.93376 0.91421 0.99829 0.99801 0.93170 0.96628 0.92574 0.83707 0.91363 0.95572 0.89877 0.91375 0.90807 0.84794 0.84477 0.90422 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 2 C -0.06 -2.27 0.60 -52.18 -0.03 -2.30 16 3 C -0.12 -4.45 7.89 71.98 0.57 -3.88 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -28.65 7.65 25.60 0.20 -28.45 16 6 H 0.07 3.56 5.68 -2.91 -0.02 3.55 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -57.86 13.29 21.45 0.28 -57.58 16 9 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.08 2.84 4.65 86.30 0.40 3.24 16 14 N -0.68 -18.92 5.71 -513.88 -2.94 -21.85 16 15 C 0.07 1.62 5.04 86.30 0.44 2.06 16 16 C -0.09 -1.69 3.36 -9.67 -0.03 -1.72 16 17 C -0.10 -1.89 5.86 30.53 0.18 -1.71 16 18 C -0.17 -2.88 10.78 26.26 0.28 -2.60 16 19 C -0.17 -2.72 10.77 26.26 0.28 -2.43 16 20 C -0.10 -1.64 6.38 30.54 0.19 -1.45 16 21 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 22 H 0.04 1.61 6.62 -2.39 -0.02 1.60 16 23 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 26 H 0.07 1.99 6.57 -2.39 -0.02 1.97 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 29 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.34 8.89 6.28 -89.69 -0.56 8.32 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.03 0.62 7.92 -2.39 -0.02 0.60 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.32 7.74 -2.39 -0.02 1.30 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.14 1.67 8.06 -2.90 -0.02 1.64 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.27 7.89 -2.39 -0.02 1.25 16 Total: -1.00 -62.47 319.18 3.42 -59.04 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.41 Total: 14.06 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 3.64 Total: -40.43 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -2.65 Total: -79.43 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.47 3.42 -59.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598991760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.239 kcal (2) G-P(sol) polarization free energy of solvation -62.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds