Wall clock time and date at job start Sun Mar 29 2020 21:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.46906 * 2 1 4 4 C 1.46899 * 111.00224 * 297.98218 * 3 2 1 5 5 C 1.50708 * 109.46807 * 292.93197 * 4 3 2 6 6 H 1.07996 * 119.99967 * 354.96179 * 5 4 3 7 7 C 1.37873 * 119.99662 * 174.96906 * 5 4 3 8 8 N 1.31512 * 120.00374 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00017 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99045 * 9 7 5 11 11 H 1.48495 * 109.47230 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46675 * 299.99502 * 9 7 5 13 13 C 1.46897 * 111.00111 * 61.93547 * 3 2 1 14 14 C 1.50702 * 109.46967 * 66.04310 * 13 3 2 15 15 N 1.30496 * 125.64991 * 274.99688 * 14 13 3 16 16 C 1.34136 * 109.25608 * 180.02562 * 15 14 13 17 17 C 1.50694 * 125.98776 * 179.97438 * 16 15 14 18 18 C 1.34674 * 108.01808 * 0.02562 * 16 15 14 19 19 C 1.50699 * 126.58857 * 179.97438 * 18 16 15 20 20 N 1.35047 * 125.64897 * 95.00421 * 14 13 3 21 21 H 0.96998 * 126.39637 * 0.25814 * 20 14 13 22 22 H 1.08999 * 109.47126 * 179.65856 * 1 2 3 23 23 H 1.08999 * 109.47014 * 299.65823 * 1 2 3 24 24 H 1.09005 * 109.47206 * 59.66010 * 1 2 3 25 25 H 1.08996 * 109.46765 * 240.00205 * 2 1 3 26 26 H 1.09000 * 109.46888 * 120.00163 * 2 1 3 27 27 H 1.08995 * 109.47361 * 52.92520 * 4 3 2 28 28 H 1.08994 * 109.47325 * 172.92841 * 4 3 2 29 29 H 0.97002 * 120.00210 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47101 * 306.04553 * 13 3 2 31 31 H 1.09004 * 109.47432 * 186.04389 * 13 3 2 32 32 H 1.08996 * 109.47264 * 270.00010 * 17 16 15 33 33 H 1.09000 * 109.47090 * 30.00993 * 17 16 15 34 34 H 1.09005 * 109.46527 * 150.00245 * 17 16 15 35 35 H 1.09000 * 109.47024 * 270.01923 * 19 18 16 36 36 H 1.08998 * 109.47004 * 30.02019 * 19 18 16 37 37 H 1.08998 * 109.46649 * 150.01500 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5885 2.0958 -1.2111 5 6 2.2706 1.4975 -2.4144 6 1 3.0162 0.7270 -2.2849 7 6 1.9427 1.9337 -3.6805 8 7 1.0344 2.8716 -3.8382 9 14 2.7886 1.1926 -5.1721 10 1 2.5243 -0.2681 -5.2161 11 1 2.2618 1.8280 -6.4065 12 1 4.2519 1.4283 -5.0792 13 6 1.5868 2.0964 1.2101 14 6 2.2479 1.4824 2.4173 15 7 1.8140 0.4424 3.0754 16 6 2.6521 0.1791 4.0890 17 6 2.5095 -0.9401 5.0880 18 6 3.6427 1.0909 4.0580 19 6 4.8087 1.1832 5.0083 20 7 3.3873 1.9173 2.9971 21 1 3.9221 2.6766 2.7172 22 1 -0.3633 -1.0276 -0.0061 23 1 -0.3633 0.5085 0.8930 24 1 -0.3634 0.5191 -0.8870 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 0.5082 2.0024 -1.3220 28 1 1.8555 3.1493 -1.1285 29 1 0.8034 3.1783 -4.7290 30 1 0.5042 2.0184 1.3098 31 1 1.8702 3.1463 1.1354 32 1 1.9277 -0.5930 5.9419 33 1 2.0006 -1.7825 4.6197 34 1 3.4974 -1.2542 5.4251 35 1 4.5415 1.8215 5.8504 36 1 5.0601 0.1871 5.3727 37 1 5.6679 1.6075 4.4888 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600111335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:56 Heat of formation + Delta-G solvation = 49.483484 kcal Electronic energy + Delta-G solvation = -17003.561814 eV Core-core repulsion = 14395.516461 eV Total energy + Delta-G solvation = -2608.045353 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.86851 -37.13703 -33.04015 -32.76133 -32.26895 -29.56878 -28.46077 -28.17565 -25.52864 -23.71211 -22.89286 -20.80106 -19.52183 -19.23260 -16.85084 -16.15131 -15.54559 -14.95797 -14.58825 -14.18403 -14.01338 -13.25752 -12.97570 -12.88637 -12.88191 -12.44998 -12.34622 -12.10986 -11.95039 -11.61141 -11.41510 -11.11627 -10.83780 -10.70504 -10.50710 -9.97919 -9.77329 -9.60879 -9.45145 -9.24337 -8.42651 -7.85563 -7.18830 -6.02023 -4.02923 2.24660 3.30176 3.34273 3.38076 3.38623 3.41811 4.43818 4.67871 5.03156 5.10675 5.19808 5.33252 5.37649 5.43200 5.45786 5.69494 5.76234 5.82076 5.95968 6.01938 6.09680 6.16082 6.30369 6.35654 6.50157 6.71132 6.79140 7.00454 7.11971 7.29702 7.46741 7.65144 7.81653 8.07505 8.20169 8.43651 8.54189 9.04785 9.61071 11.08523 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037887 B = 0.005437 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.861340 B = 5148.402940 C = 5336.767344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.062 3.938 3 N -0.532 5.532 4 C 0.189 3.811 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.127 3.873 14 C 0.244 3.756 15 N -0.485 5.485 16 C -0.003 4.003 17 C -0.062 4.062 18 C -0.042 4.042 19 C -0.071 4.071 20 N -0.557 5.557 21 H 0.417 0.583 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.007 0.993 28 H 0.024 0.976 29 H 0.261 0.739 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 -2.549 15.803 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.066 4.066 3 N -0.257 5.257 4 C 0.064 3.936 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.003 4.003 14 C -0.021 4.021 15 N -0.206 5.206 16 C -0.132 4.132 17 C -0.120 4.120 18 C -0.158 4.158 19 C -0.129 4.129 20 N -0.160 5.160 21 H 0.254 0.746 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.025 0.975 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.021 -2.931 15.484 16.264 hybrid contribution 0.520 0.595 -0.937 1.225 sum 4.542 -2.336 14.548 15.418 Atomic orbital electron populations 1.22298 0.99166 1.01013 1.01619 1.21962 0.92445 0.90586 1.01611 1.62377 1.59391 1.02553 1.01367 1.19808 0.95126 0.93478 0.85194 1.21082 1.21901 1.21315 0.89992 0.92019 1.24959 0.95290 0.95256 0.98987 1.69942 1.31960 1.29194 1.22805 0.86577 0.79779 0.79338 0.81809 1.20261 1.21381 1.20268 1.20444 0.97209 0.96702 0.85928 1.23267 0.86811 0.94463 0.97593 1.70174 1.29284 1.13974 1.07136 1.20478 0.94179 0.99697 0.98893 1.19969 1.01530 0.94922 0.95615 1.20884 1.02128 0.97404 0.95372 1.20143 0.93368 1.03077 0.96351 1.43086 1.22274 1.26584 1.24082 0.74566 0.93549 0.93259 0.91800 0.90615 0.91852 0.97496 0.95812 0.92900 0.91975 0.90186 0.91914 0.91401 0.91819 0.91439 0.90315 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.06 1.31 5.69 -3.82 -0.02 1.29 16 3 N -0.53 -11.58 4.68 -237.52 -1.11 -12.69 16 4 C 0.19 4.81 4.53 -4.97 -0.02 4.79 16 5 C -0.50 -14.06 8.40 -34.44 -0.29 -14.35 16 6 H 0.06 1.73 7.38 -52.49 -0.39 1.34 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.13 2.35 5.38 -4.98 -0.03 2.32 16 14 C 0.24 4.23 6.92 -155.41 -1.07 3.16 16 15 N -0.49 -8.77 10.15 -7.07 -0.07 -8.85 16 16 C 0.00 -0.05 7.09 -82.85 -0.59 -0.63 16 17 C -0.06 -0.72 10.22 36.00 0.37 -0.36 16 18 C -0.04 -0.58 7.24 -81.60 -0.59 -1.17 16 19 C -0.07 -0.65 10.22 36.01 0.37 -0.28 16 20 N -0.56 -8.07 6.15 -6.54 -0.04 -8.11 16 21 H 0.42 4.96 8.96 -40.82 -0.37 4.59 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 0.93 6.34 -51.93 -0.33 0.60 16 24 H 0.06 1.39 6.28 -51.93 -0.33 1.06 16 25 H 0.08 1.72 6.98 -51.93 -0.36 1.35 16 26 H 0.06 1.32 6.42 -51.93 -0.33 0.98 16 27 H 0.01 0.20 6.01 -51.93 -0.31 -0.12 16 28 H 0.02 0.64 7.91 -51.93 -0.41 0.22 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.06 1.16 6.07 -51.93 -0.32 0.85 16 31 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.59 7.17 -51.93 -0.37 0.22 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.62 7.18 -51.93 -0.37 0.25 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 299.16 15.07 4.51 4.51 Total: -1.00 -31.42 299.16 -8.18 -39.60 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.55 Total: 1.58 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.63 Total: -6.99 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.49 Total: -55.34 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.42 -8.18 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600111335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.081 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds