Wall clock time and date at job start Sun Mar 29 2020 21:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46898 * 109.46906 * 2 1 4 4 C 1.46899 * 111.00224 * 297.98218 * 3 2 1 5 5 C 1.50708 * 109.46807 * 292.93197 * 4 3 2 6 6 H 1.07996 * 119.99967 * 354.96179 * 5 4 3 7 7 C 1.37873 * 119.99662 * 174.96906 * 5 4 3 8 8 N 1.31512 * 120.00374 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00017 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99045 * 9 7 5 11 11 H 1.48495 * 109.47230 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46675 * 299.99502 * 9 7 5 13 13 C 1.46897 * 111.00111 * 61.93547 * 3 2 1 14 14 C 1.50702 * 109.46967 * 66.04310 * 13 3 2 15 15 N 1.30496 * 125.64991 * 274.99688 * 14 13 3 16 16 C 1.34136 * 109.25608 * 180.02562 * 15 14 13 17 17 C 1.50694 * 125.98776 * 179.97438 * 16 15 14 18 18 C 1.34674 * 108.01808 * 0.02562 * 16 15 14 19 19 C 1.50699 * 126.58857 * 179.97438 * 18 16 15 20 20 N 1.35047 * 125.64897 * 95.00421 * 14 13 3 21 21 H 0.96998 * 126.39637 * 0.25814 * 20 14 13 22 22 H 1.08999 * 109.47126 * 179.65856 * 1 2 3 23 23 H 1.08999 * 109.47014 * 299.65823 * 1 2 3 24 24 H 1.09005 * 109.47206 * 59.66010 * 1 2 3 25 25 H 1.08996 * 109.46765 * 240.00205 * 2 1 3 26 26 H 1.09000 * 109.46888 * 120.00163 * 2 1 3 27 27 H 1.08995 * 109.47361 * 52.92520 * 4 3 2 28 28 H 1.08994 * 109.47325 * 172.92841 * 4 3 2 29 29 H 0.97002 * 120.00210 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47101 * 306.04553 * 13 3 2 31 31 H 1.09004 * 109.47432 * 186.04389 * 13 3 2 32 32 H 1.08996 * 109.47264 * 270.00010 * 17 16 15 33 33 H 1.09000 * 109.47090 * 30.00993 * 17 16 15 34 34 H 1.09005 * 109.46527 * 150.00245 * 17 16 15 35 35 H 1.09000 * 109.47024 * 270.01923 * 19 18 16 36 36 H 1.08998 * 109.47004 * 30.02019 * 19 18 16 37 37 H 1.08998 * 109.46649 * 150.01500 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5885 2.0958 -1.2111 5 6 2.2706 1.4975 -2.4144 6 1 3.0162 0.7270 -2.2849 7 6 1.9427 1.9337 -3.6805 8 7 1.0344 2.8716 -3.8382 9 14 2.7886 1.1926 -5.1721 10 1 2.5243 -0.2681 -5.2161 11 1 2.2618 1.8280 -6.4065 12 1 4.2519 1.4283 -5.0792 13 6 1.5868 2.0964 1.2101 14 6 2.2479 1.4824 2.4173 15 7 1.8140 0.4424 3.0754 16 6 2.6521 0.1791 4.0890 17 6 2.5095 -0.9401 5.0880 18 6 3.6427 1.0909 4.0580 19 6 4.8087 1.1832 5.0083 20 7 3.3873 1.9173 2.9971 21 1 3.9221 2.6766 2.7172 22 1 -0.3633 -1.0276 -0.0061 23 1 -0.3633 0.5085 0.8930 24 1 -0.3634 0.5191 -0.8870 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 0.5082 2.0024 -1.3220 28 1 1.8555 3.1493 -1.1285 29 1 0.8034 3.1783 -4.7290 30 1 0.5042 2.0184 1.3098 31 1 1.8702 3.1463 1.1354 32 1 1.9277 -0.5930 5.9419 33 1 2.0006 -1.7825 4.6197 34 1 3.4974 -1.2542 5.4251 35 1 4.5415 1.8215 5.8504 36 1 5.0601 0.1871 5.3727 37 1 5.6679 1.6075 4.4888 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600111335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:56 Heat of formation + Delta-G solvation = 28.315676 kcal Electronic energy + Delta-G solvation = -17004.479719 eV Core-core repulsion = 14395.516461 eV Total energy + Delta-G solvation = -2608.963258 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.04178 -38.86740 -34.81920 -34.06057 -33.53301 -31.20663 -30.01885 -29.28537 -27.23264 -25.15905 -24.60050 -22.20721 -20.93025 -20.57328 -18.39912 -17.94482 -17.02627 -16.74318 -16.17296 -15.68865 -15.43574 -14.67459 -14.34561 -14.25789 -13.77961 -13.66012 -13.47493 -13.30195 -13.15726 -13.12656 -13.00730 -12.73903 -12.68213 -12.51351 -12.41346 -11.89975 -11.52303 -11.32402 -10.82658 -10.69841 -10.58079 -9.09932 -8.86382 -8.17783 -6.26944 1.09685 1.41667 1.43867 1.51876 2.08408 2.26410 2.42413 3.14790 3.35573 3.63608 4.01368 4.18790 4.29360 4.33644 4.37363 4.50776 4.55993 4.61868 4.70912 4.78348 4.94653 4.96427 5.05116 5.10173 5.15761 5.20369 5.26830 5.35049 5.41225 5.50848 5.67776 5.96413 6.06828 6.29803 6.54065 6.61883 6.87982 7.23590 7.41944 8.92167 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037887 B = 0.005437 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.861340 B = 5148.402940 C = 5336.767344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 N -0.536 5.536 4 C 0.204 3.796 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.963 3.037 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.133 3.867 14 C 0.215 3.785 15 N -0.511 5.511 16 C -0.036 4.036 17 C -0.059 4.059 18 C -0.026 4.026 19 C -0.070 4.070 20 N -0.551 5.551 21 H 0.428 0.572 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.037 0.963 25 H 0.055 0.945 26 H 0.069 0.931 27 H -0.015 1.015 28 H 0.007 0.993 29 H 0.264 0.736 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.880 -3.219 17.078 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.058 4.058 3 N -0.261 5.261 4 C 0.078 3.922 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.788 3.212 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.004 3.996 14 C -0.050 4.050 15 N -0.233 5.233 16 C -0.165 4.165 17 C -0.116 4.116 18 C -0.143 4.143 19 C -0.128 4.128 20 N -0.155 5.155 21 H 0.267 0.733 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.003 0.997 28 H 0.025 0.975 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.588 -3.597 16.776 18.045 hybrid contribution 0.061 0.805 -1.209 1.454 sum 5.649 -2.791 15.567 16.794 Atomic orbital electron populations 1.22154 0.98167 1.01932 1.00567 1.21846 0.93178 0.90078 1.00743 1.62255 1.59630 1.02799 1.01380 1.19464 0.93499 0.92711 0.86500 1.21351 1.21980 1.21299 0.91236 0.92593 1.25789 0.95843 0.95550 1.01942 1.70057 1.33182 1.30350 1.23596 0.85528 0.78884 0.78643 0.78105 1.19627 1.20752 1.19466 1.20333 0.97102 0.97041 0.85156 1.22793 0.88472 0.95623 0.98088 1.70085 1.30613 1.14318 1.08240 1.21156 0.94520 1.01487 0.99327 1.20050 1.03214 0.93402 0.94967 1.21632 1.02392 0.95645 0.94608 1.20331 0.91802 1.04758 0.95872 1.43096 1.21491 1.26892 1.24039 0.73297 0.91604 0.92634 0.94358 0.92653 0.91232 0.99696 0.97526 0.92717 0.92595 0.89199 0.90774 0.92426 0.89190 0.89549 0.88556 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.77 9.26 71.98 0.67 -6.11 16 2 C 0.07 2.98 5.69 86.31 0.49 3.47 16 3 N -0.54 -23.79 4.68 -905.36 -4.24 -28.03 16 4 C 0.20 10.74 4.53 85.56 0.39 11.12 16 5 C -0.52 -29.53 8.40 25.60 0.21 -29.32 16 6 H 0.06 3.18 7.38 -2.91 -0.02 3.16 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 9 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.13 4.99 5.38 85.56 0.46 5.45 16 14 C 0.21 7.37 6.92 138.13 0.96 8.33 16 15 N -0.51 -18.17 10.15 -176.28 -1.79 -19.96 16 16 C -0.04 -1.04 7.09 41.39 0.29 -0.75 16 17 C -0.06 -1.22 10.22 71.23 0.73 -0.50 16 18 C -0.03 -0.65 7.24 40.95 0.30 -0.36 16 19 C -0.07 -1.00 10.22 71.24 0.73 -0.28 16 20 N -0.55 -15.17 6.15 -174.60 -1.07 -16.24 16 21 H 0.43 9.52 8.96 -92.71 -0.83 8.68 16 22 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.05 2.13 6.34 -2.39 -0.02 2.11 16 24 H 0.04 1.71 6.28 -2.38 -0.01 1.70 16 25 H 0.05 2.56 6.98 -2.39 -0.02 2.54 16 26 H 0.07 2.90 6.42 -2.39 -0.02 2.89 16 27 H -0.01 -0.83 6.01 -2.39 -0.01 -0.84 16 28 H 0.01 0.37 7.91 -2.39 -0.02 0.35 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.06 2.15 6.07 -2.39 -0.01 2.13 16 31 H 0.09 3.10 7.92 -2.39 -0.02 3.08 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.35 7.17 -2.38 -0.02 1.34 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 1.09 7.18 -2.39 -0.02 1.08 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -67.85 299.16 1.13 -66.72 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.24 Total: 14.32 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 5.68 Total: -8.07 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -6.82 Total: -119.48 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.85 1.13 -66.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600111335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.037 kcal (2) G-P(sol) polarization free energy of solvation -67.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds