Wall clock time and date at job start Sun Mar 29 2020 21:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46614 * 2 1 4 4 C 1.53004 * 109.47061 * 119.99739 * 2 1 3 5 5 C 1.50698 * 109.47147 * 295.00037 * 4 2 1 6 6 H 1.08006 * 120.00118 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00099 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00035 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99769 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47002 * 60.00515 * 9 7 5 11 11 H 1.48501 * 109.46449 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47326 * 299.99847 * 9 7 5 13 13 C 1.53000 * 109.47360 * 239.99797 * 2 1 3 14 14 N 1.46896 * 109.46964 * 64.99646 * 13 2 1 15 15 C 1.46901 * 110.99994 * 66.04816 * 14 13 2 16 16 C 1.46903 * 111.00029 * 190.00072 * 14 13 2 17 17 C 1.50698 * 109.47348 * 170.00159 * 16 14 13 18 18 C 1.39874 * 126.04031 * 270.00061 * 17 16 14 19 19 N 1.30836 * 108.20052 * 179.73886 * 18 17 16 20 20 N 1.40084 * 108.20904 * 0.40640 * 19 18 17 21 21 H 0.97001 * 126.04219 * 179.85882 * 20 19 18 22 22 C 1.34947 * 107.92164 * 359.58781 * 20 19 18 23 23 H 1.09000 * 109.47514 * 60.00665 * 1 2 3 24 24 H 1.09011 * 109.47003 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47163 * 300.00205 * 1 2 3 26 26 H 1.08991 * 109.47117 * 55.00203 * 4 2 1 27 27 H 1.09004 * 109.46714 * 175.00278 * 4 2 1 28 28 H 0.96996 * 120.00017 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46764 * 304.99888 * 13 2 1 30 30 H 1.09001 * 109.47176 * 185.00051 * 13 2 1 31 31 H 1.09004 * 109.47098 * 183.95360 * 15 14 13 32 32 H 1.08993 * 109.47203 * 303.95310 * 15 14 13 33 33 H 1.09003 * 109.47007 * 63.95116 * 15 14 13 34 34 H 1.09007 * 109.47163 * 50.00297 * 16 14 13 35 35 H 1.09002 * 109.47019 * 290.00410 * 16 14 13 36 36 H 1.08001 * 125.89534 * 0.02562 * 18 17 16 37 37 H 1.08006 * 126.12506 * 180.22115 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 2.6772 -1.5180 3.8512 9 14 1.4983 0.5630 5.2496 10 1 0.0183 0.6683 5.3092 11 1 1.9945 -0.1364 6.4621 12 1 2.0894 1.9237 5.1870 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.3340 1.3373 -2.4894 16 6 1.9125 -0.7359 -3.6671 17 6 1.2830 -0.0400 -4.8463 18 6 -0.0154 -0.2435 -5.3250 19 7 -0.1992 0.5424 -6.3547 20 7 0.9813 1.2652 -6.5699 21 1 1.1295 1.9212 -7.2689 22 6 1.8740 0.8921 -5.6292 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6054 -1.7197 1.2952 27 1 3.1264 -0.7994 1.2056 28 1 2.9251 -1.8405 4.7318 29 1 1.6054 -1.7198 -1.2950 30 1 3.1264 -0.7995 -1.2055 31 1 1.9759 1.9070 -3.3470 32 1 2.1239 1.8891 -1.5733 33 1 3.4089 1.1804 -2.5807 34 1 1.4857 -1.7336 -3.5637 35 1 2.9882 -0.8153 -3.8238 36 1 -0.7424 -0.9276 -4.9126 37 1 2.8802 1.2696 -5.5208 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602473741.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:53 Heat of formation + Delta-G solvation = 64.796857 kcal Electronic energy + Delta-G solvation = -16612.023460 eV Core-core repulsion = 14004.642145 eV Total energy + Delta-G solvation = -2607.381315 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23962 -37.67722 -34.45785 -32.19659 -31.51933 -30.42404 -27.15867 -26.83566 -25.84465 -23.44368 -22.03897 -21.45391 -20.02677 -18.75603 -17.72201 -16.34549 -15.42481 -15.02544 -14.50272 -14.42419 -14.27478 -14.10302 -13.48710 -12.95402 -12.56472 -12.45549 -12.23606 -11.50632 -11.41618 -11.26587 -11.12310 -10.81102 -10.76027 -10.66271 -10.24024 -10.19115 -9.70401 -9.53600 -9.10810 -8.93167 -8.60556 -8.28613 -7.88250 -5.93894 -3.94702 1.80190 2.71713 2.81823 3.37035 3.41206 3.43962 4.42480 4.53398 4.77305 4.80339 5.13074 5.41779 5.42748 5.54472 5.66637 5.68304 5.80805 5.91934 5.97744 6.15772 6.17481 6.28772 6.47585 6.55817 6.62797 6.78010 7.09062 7.14604 7.21976 7.27894 7.46765 7.53176 7.58060 7.74256 7.91176 8.06941 8.51417 9.11627 9.68429 11.17671 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.057947 B = 0.004198 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.083602 B = 6668.094388 C = 6733.677164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.060 3.940 14 N -0.534 5.534 15 C 0.024 3.976 16 C 0.128 3.872 17 C -0.218 4.218 18 C 0.070 3.930 19 N -0.303 5.303 20 N -0.482 5.482 21 H 0.436 0.564 22 C 0.057 3.943 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.051 0.949 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.260 0.740 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.018 0.982 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.183 0.817 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 3.723 -18.480 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.067 4.067 14 N -0.258 5.258 15 C -0.124 4.124 16 C -0.001 4.001 17 C -0.229 4.229 18 C -0.117 4.117 19 N -0.125 5.125 20 N -0.190 5.190 21 H 0.279 0.721 22 C -0.091 4.091 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.037 0.963 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.200 0.800 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.595 4.047 -19.199 19.686 hybrid contribution 1.401 0.443 1.213 1.905 sum -0.194 4.490 -17.987 18.540 Atomic orbital electron populations 1.21575 0.95785 1.00480 1.00098 1.21225 0.95956 0.99053 0.93747 0.92637 1.19125 0.95848 0.95577 0.90493 1.21211 1.34508 1.08275 0.91024 0.92665 1.25011 0.95369 0.95088 0.99037 1.69953 1.39101 1.21284 1.23423 0.86705 0.78926 0.80096 0.82552 1.20260 1.21404 1.20360 1.22331 0.97507 0.97241 0.89590 1.62021 1.58284 1.03941 1.01528 1.22399 0.95297 0.92181 1.02537 1.20336 0.96919 0.96149 0.86653 1.20054 0.95892 1.04949 1.02046 1.23823 0.96521 0.97966 0.93351 1.77317 1.04431 1.10372 1.20427 1.46259 1.10247 1.35538 1.26976 0.72052 1.22384 0.96628 0.98346 0.91721 0.93884 0.94221 0.92956 0.96584 0.97009 0.93085 0.91288 0.95429 0.92275 0.90842 0.96325 0.90133 0.94756 0.79983 0.81166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.66 2.26 -90.62 -0.20 -1.87 16 3 H 0.06 1.16 6.26 -51.93 -0.33 0.84 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.04 4.35 -3.83 -0.02 1.02 16 14 N -0.53 -7.84 4.21 -244.37 -1.03 -8.86 16 15 C 0.02 0.33 9.08 60.07 0.55 0.88 16 16 C 0.13 1.56 5.45 -4.98 -0.03 1.54 16 17 C -0.22 -2.50 4.99 -105.05 -0.52 -3.02 16 18 C 0.07 0.84 11.96 -17.36 -0.21 0.63 16 19 N -0.30 -3.76 12.70 30.63 0.39 -3.37 16 20 N -0.48 -4.57 7.36 30.45 0.22 -4.34 16 21 H 0.44 2.66 8.96 -182.61 -1.64 1.02 16 22 C 0.06 0.54 10.52 -17.22 -0.18 0.36 16 23 H 0.04 0.78 7.75 -51.93 -0.40 0.37 16 24 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 29 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 30 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.06 0.73 6.32 -51.93 -0.33 0.40 16 32 H 0.07 1.11 6.21 -51.93 -0.32 0.79 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.95 7.93 -51.93 -0.41 0.54 16 35 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 36 H 0.18 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -31.96 302.83 -8.02 -39.98 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.08 Total: -3.24 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -0.80 Total: -15.16 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.32 Total: -42.93 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.96 -8.02 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473741.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.777 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds