Wall clock time and date at job start Sun Mar 29 2020 21:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46614 * 2 1 4 4 C 1.53004 * 109.47061 * 119.99739 * 2 1 3 5 5 C 1.50698 * 109.47147 * 295.00037 * 4 2 1 6 6 H 1.08006 * 120.00118 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00099 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00035 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99769 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47002 * 60.00515 * 9 7 5 11 11 H 1.48501 * 109.46449 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47326 * 299.99847 * 9 7 5 13 13 C 1.53000 * 109.47360 * 239.99797 * 2 1 3 14 14 N 1.46896 * 109.46964 * 64.99646 * 13 2 1 15 15 C 1.46901 * 110.99994 * 66.04816 * 14 13 2 16 16 C 1.46903 * 111.00029 * 190.00072 * 14 13 2 17 17 C 1.50698 * 109.47348 * 170.00159 * 16 14 13 18 18 C 1.39874 * 126.04031 * 270.00061 * 17 16 14 19 19 N 1.30836 * 108.20052 * 179.73886 * 18 17 16 20 20 N 1.40084 * 108.20904 * 0.40640 * 19 18 17 21 21 H 0.97001 * 126.04219 * 179.85882 * 20 19 18 22 22 C 1.34947 * 107.92164 * 359.58781 * 20 19 18 23 23 H 1.09000 * 109.47514 * 60.00665 * 1 2 3 24 24 H 1.09011 * 109.47003 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47163 * 300.00205 * 1 2 3 26 26 H 1.08991 * 109.47117 * 55.00203 * 4 2 1 27 27 H 1.09004 * 109.46714 * 175.00278 * 4 2 1 28 28 H 0.96996 * 120.00017 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46764 * 304.99888 * 13 2 1 30 30 H 1.09001 * 109.47176 * 185.00051 * 13 2 1 31 31 H 1.09004 * 109.47098 * 183.95360 * 15 14 13 32 32 H 1.08993 * 109.47203 * 303.95310 * 15 14 13 33 33 H 1.09003 * 109.47007 * 63.95116 * 15 14 13 34 34 H 1.09007 * 109.47163 * 50.00297 * 16 14 13 35 35 H 1.09002 * 109.47019 * 290.00410 * 16 14 13 36 36 H 1.08001 * 125.89534 * 0.02562 * 18 17 16 37 37 H 1.08006 * 126.12506 * 180.22115 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9932 -0.4016 3.7283 8 7 2.6772 -1.5180 3.8512 9 14 1.4983 0.5630 5.2496 10 1 0.0183 0.6683 5.3092 11 1 1.9945 -0.1364 6.4621 12 1 2.0894 1.9237 5.1870 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.3340 1.3373 -2.4894 16 6 1.9125 -0.7359 -3.6671 17 6 1.2830 -0.0400 -4.8463 18 6 -0.0154 -0.2435 -5.3250 19 7 -0.1992 0.5424 -6.3547 20 7 0.9813 1.2652 -6.5699 21 1 1.1295 1.9212 -7.2689 22 6 1.8740 0.8921 -5.6292 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6054 -1.7197 1.2952 27 1 3.1264 -0.7994 1.2056 28 1 2.9251 -1.8405 4.7318 29 1 1.6054 -1.7198 -1.2950 30 1 3.1264 -0.7995 -1.2055 31 1 1.9759 1.9070 -3.3470 32 1 2.1239 1.8891 -1.5733 33 1 3.4089 1.1804 -2.5807 34 1 1.4857 -1.7336 -3.5637 35 1 2.9882 -0.8153 -3.8238 36 1 -0.7424 -0.9276 -4.9126 37 1 2.8802 1.2696 -5.5208 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602473741.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:52 Heat of formation + Delta-G solvation = 43.554332 kcal Electronic energy + Delta-G solvation = -16612.944605 eV Core-core repulsion = 14004.642145 eV Total energy + Delta-G solvation = -2608.302460 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.04878 -38.98475 -36.13567 -34.10073 -32.42598 -31.44344 -28.90011 -28.15940 -27.15837 -25.20787 -22.98249 -22.75590 -20.87076 -20.37286 -18.56684 -18.42167 -16.79662 -16.39372 -16.05481 -15.51914 -15.29289 -15.24476 -14.82120 -14.25905 -14.15444 -13.76132 -13.50584 -13.24504 -12.96605 -12.72822 -12.52985 -12.40594 -12.30557 -12.16806 -11.97937 -11.54129 -11.31359 -11.00455 -10.86633 -10.51498 -10.49043 -9.49413 -9.01324 -8.14289 -6.23020 1.02633 1.41843 1.44472 1.52078 1.84529 2.14019 2.44600 3.19035 3.31914 3.95301 4.07759 4.15577 4.27862 4.37366 4.57880 4.61428 4.71537 4.72250 4.86638 4.92884 4.99307 5.02633 5.05819 5.17946 5.26353 5.34549 5.52891 5.55547 5.60974 5.72619 5.86374 5.94123 6.23117 6.33480 6.38819 6.50692 6.78585 6.92968 7.44970 8.97528 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.057947 B = 0.004198 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.083602 B = 6668.094388 C = 6733.677164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.073 3.927 14 N -0.539 5.539 15 C 0.026 3.974 16 C 0.133 3.867 17 C -0.240 4.240 18 C 0.059 3.941 19 N -0.334 5.334 20 N -0.472 5.472 21 H 0.451 0.549 22 C 0.074 3.926 23 H 0.062 0.938 24 H 0.037 0.963 25 H 0.033 0.967 26 H -0.009 1.009 27 H -0.014 1.014 28 H 0.262 0.738 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.028 0.972 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.190 0.810 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 5.035 -19.423 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.055 4.055 14 N -0.263 5.263 15 C -0.122 4.122 16 C 0.005 3.995 17 C -0.251 4.251 18 C -0.127 4.127 19 N -0.158 5.158 20 N -0.182 5.182 21 H 0.297 0.703 22 C -0.075 4.075 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.009 0.991 27 H 0.004 0.996 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.206 0.794 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.632 5.379 -20.180 20.948 hybrid contribution 1.442 0.044 1.432 2.033 sum -0.190 5.423 -18.748 19.517 Atomic orbital electron populations 1.21455 0.94941 1.00339 1.00105 1.21032 0.96486 0.98472 0.93116 0.92913 1.19013 0.94068 0.94705 0.92685 1.21619 1.34342 1.08562 0.92186 0.92318 1.25918 0.95291 0.96078 1.02520 1.70088 1.40281 1.22950 1.24280 0.85600 0.78911 0.78815 0.78331 1.19327 1.21004 1.19302 1.22034 0.96918 0.97054 0.89508 1.61967 1.58591 1.04312 1.01468 1.22388 0.95894 0.91554 1.02354 1.20300 0.97653 0.95920 0.85663 1.20029 0.96085 1.06417 1.02615 1.24053 0.97130 0.98118 0.93412 1.77270 1.06011 1.11382 1.21092 1.46307 1.09477 1.35196 1.27192 0.70331 1.22833 0.97466 0.96844 0.90392 0.91885 0.94424 0.94740 0.99082 0.99568 0.92968 0.91285 0.96006 0.90533 0.92633 0.95395 0.90117 0.93706 0.79360 0.78015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.33 8.89 71.98 0.64 -3.69 16 2 C -0.07 -2.97 2.26 -10.79 -0.02 -3.00 16 3 H 0.05 2.20 6.26 -2.39 -0.01 2.18 16 4 C 0.03 1.73 4.45 29.85 0.13 1.87 16 5 C -0.53 -30.14 8.41 25.60 0.22 -29.93 16 6 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 7 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 8 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 9 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.07 2.46 4.35 86.30 0.38 2.83 16 14 N -0.54 -14.92 4.21 -927.04 -3.90 -18.82 16 15 C 0.03 0.66 9.08 127.69 1.16 1.82 16 16 C 0.13 2.97 5.45 85.56 0.47 3.44 16 17 C -0.24 -4.95 4.99 -20.14 -0.10 -5.05 16 18 C 0.06 1.33 11.96 85.24 1.02 2.35 16 19 N -0.33 -7.77 12.70 -57.02 -0.72 -8.49 16 20 N -0.47 -7.73 7.36 -57.59 -0.42 -8.16 16 21 H 0.45 4.29 8.96 -213.33 -1.91 2.37 16 22 C 0.07 1.17 10.52 83.54 0.88 2.04 16 23 H 0.06 2.19 7.75 -2.39 -0.02 2.17 16 24 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.03 1.43 6.95 -2.39 -0.02 1.42 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 28 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 30 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 31 H 0.08 1.65 6.32 -2.38 -0.02 1.64 16 32 H 0.05 1.60 6.21 -2.39 -0.01 1.58 16 33 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 1.79 7.93 -2.38 -0.02 1.77 16 35 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 36 H 0.19 3.70 8.06 -2.91 -0.02 3.67 16 37 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -68.49 302.83 1.62 -66.87 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -0.86 Total: 5.83 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 5.22 Total: -26.90 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -4.76 Total: -92.55 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -68.49 1.62 -66.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473741.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.423 kcal (2) G-P(sol) polarization free energy of solvation -68.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds