Wall clock time and date at job start Sun Mar 29 2020 21:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47232 * 2 1 4 4 C 1.52997 * 109.47082 * 120.00222 * 2 1 3 5 5 C 1.50703 * 109.47044 * 294.99729 * 4 2 1 6 6 H 1.07998 * 119.99973 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99934 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00277 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99895 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47409 * 59.99660 * 9 7 5 11 11 H 1.48502 * 109.47185 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46947 * 299.99260 * 9 7 5 13 13 C 1.53003 * 109.47125 * 240.00014 * 2 1 3 14 14 N 1.46903 * 109.46899 * 64.99825 * 13 2 1 15 15 C 1.46898 * 110.99673 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47006 * 180.02562 * 15 14 13 17 17 N 1.46504 * 109.46883 * 180.02562 * 16 15 14 18 18 C 1.36874 * 126.39943 * 90.00176 * 17 16 15 19 19 C 1.34669 * 106.81918 * 179.97438 * 18 17 16 20 20 N 1.34123 * 108.02125 * 0.02562 * 19 18 17 21 21 C 1.30508 * 109.25485 * 359.72427 * 20 19 18 22 22 H 1.08990 * 109.47596 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47050 * 300.00421 * 1 2 3 24 24 H 1.09005 * 109.47199 * 59.99350 * 1 2 3 25 25 H 1.09004 * 109.47132 * 54.99655 * 4 2 1 26 26 H 1.08999 * 109.47269 * 174.99707 * 4 2 1 27 27 H 0.97002 * 120.00237 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.46902 * 305.00654 * 13 2 1 29 29 H 1.08993 * 109.47505 * 185.00149 * 13 2 1 30 30 H 1.00894 * 111.00528 * 303.95530 * 14 13 2 31 31 H 1.09001 * 109.47392 * 60.00807 * 15 14 13 32 32 H 1.09001 * 109.47520 * 300.00529 * 15 14 13 33 33 H 1.09001 * 109.47002 * 299.99782 * 16 15 14 34 34 H 1.08993 * 109.46955 * 60.00219 * 16 15 14 35 35 H 1.08001 * 126.59311 * 359.95764 * 18 17 16 36 36 H 1.08000 * 125.99191 * 179.97438 * 19 18 17 37 37 H 1.07997 * 125.65225 * 180.29380 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9932 -0.4017 3.7282 8 7 2.6763 -1.5188 3.8511 9 14 1.4985 0.5626 5.2496 10 1 0.0185 0.6682 5.3092 11 1 1.9935 -0.1374 6.4621 12 1 2.0898 1.9234 5.1870 13 6 2.0400 -0.7213 -1.2493 14 7 1.6513 0.0374 -2.4456 15 6 2.1246 -0.6271 -3.6672 16 6 1.7023 0.1910 -4.8892 17 7 2.1738 -0.4721 -6.1075 18 6 1.4933 -1.4084 -6.8381 19 6 2.2873 -1.7493 -7.8709 20 7 3.4221 -1.0410 -7.7734 21 6 3.3590 -0.2697 -6.7225 22 1 -0.3634 -1.0275 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 1.6053 -1.7199 1.2951 26 1 3.1262 -0.7996 1.2055 27 1 2.9236 -1.8418 4.7317 28 1 1.6052 -1.7198 -1.2952 29 1 3.1262 -0.7995 -1.2057 30 1 0.6528 0.1793 -2.4753 31 1 1.6902 -1.6248 -3.7297 32 1 3.2115 -0.7052 -3.6406 33 1 0.6154 0.2693 -4.9161 34 1 2.1370 1.1885 -4.8266 35 1 0.5088 -1.7989 -6.6267 36 1 2.0521 -2.4679 -8.6421 37 1 4.1280 0.4153 -6.3973 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602505735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:11 Heat of formation + Delta-G solvation = 44.554596 kcal Electronic energy + Delta-G solvation = -16028.117544 eV Core-core repulsion = 13419.858459 eV Total energy + Delta-G solvation = -2608.259085 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.16525 -37.42377 -35.19214 -33.32925 -31.88851 -29.66305 -28.52979 -26.84837 -25.25743 -23.18651 -22.09955 -21.48260 -21.01241 -19.08303 -17.54811 -16.58389 -15.98653 -15.47586 -14.73923 -14.60711 -14.29355 -13.95533 -13.88564 -13.72813 -13.23250 -12.71832 -12.50060 -12.29718 -11.84076 -11.61305 -11.38398 -10.92946 -10.79401 -10.41237 -10.32462 -10.14634 -9.81293 -9.80368 -9.22577 -9.03638 -8.69233 -8.41741 -8.36580 -6.01535 -4.03309 1.89015 2.56479 3.03231 3.31549 3.36349 3.38393 4.22728 4.39674 4.45541 4.57495 4.69307 4.80705 5.02696 5.21871 5.33266 5.34236 5.54257 5.56682 5.66286 5.70343 5.94292 6.10661 6.13682 6.34114 6.44683 6.56474 6.77644 6.99636 7.01786 7.07402 7.15701 7.41078 7.63930 7.78855 7.91576 7.97811 8.40949 9.02738 9.60395 11.09931 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.069483 B = 0.003338 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.876806 B = 8385.169811 C = 8512.007705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.066 3.934 14 N -0.687 5.687 15 C 0.044 3.956 16 C 0.105 3.895 17 N -0.455 5.455 18 C -0.057 4.057 19 C -0.034 4.034 20 N -0.500 5.500 21 C 0.183 3.817 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.031 0.969 25 H 0.014 0.986 26 H 0.015 0.985 27 H 0.261 0.739 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.339 0.661 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 1.953 -17.939 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.063 4.063 14 N -0.319 5.319 15 C -0.087 4.087 16 C -0.018 4.018 17 N -0.138 5.138 18 C -0.191 4.191 19 C -0.182 4.182 20 N -0.218 5.218 21 C -0.099 4.099 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.189 0.811 36 H 0.185 0.815 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.438 2.275 -18.180 18.483 hybrid contribution -1.556 -0.345 1.508 2.194 sum -3.994 1.930 -16.672 17.252 Atomic orbital electron populations 1.21749 0.96608 1.00487 1.00337 1.21239 0.94918 1.00159 0.94023 0.91495 1.19105 0.96173 0.95370 0.90290 1.21185 1.34899 1.08318 0.90972 0.92585 1.25022 0.95268 0.95087 0.99132 1.69952 1.38905 1.21193 1.23574 0.86678 0.78855 0.80144 0.82444 1.20302 1.21342 1.20235 1.22170 1.00594 0.94463 0.89052 1.60534 1.19715 1.50523 1.01133 1.22243 1.01740 0.95327 0.89342 1.21900 1.01125 0.97247 0.81502 1.45582 1.15357 1.31668 1.21200 1.22759 1.01008 0.98466 0.96831 1.22296 0.91642 1.03742 1.00480 1.70298 1.23690 1.09380 1.18400 1.25057 0.89475 1.02898 0.92479 0.93991 0.91703 0.95026 0.96744 0.96628 0.92975 0.95567 0.91229 0.84194 0.94824 0.90315 0.89182 0.87735 0.81108 0.81516 0.77903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.77 37.16 0.33 -2.03 16 2 C -0.08 -1.64 2.54 -90.62 -0.23 -1.87 16 3 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.52 -14.16 8.41 -34.44 -0.29 -14.45 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.07 1.06 5.14 -3.82 -0.02 1.04 16 14 N -0.69 -8.70 6.50 -113.77 -0.74 -9.44 16 15 C 0.04 0.46 6.01 -3.82 -0.02 0.44 16 16 C 0.11 0.86 6.41 -4.04 -0.03 0.83 16 17 N -0.46 -4.39 2.75 -118.57 -0.33 -4.71 16 18 C -0.06 -0.55 11.58 -16.56 -0.19 -0.74 16 19 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 20 N -0.50 -6.40 11.25 -14.67 -0.17 -6.56 16 21 C 0.18 1.94 12.56 -90.37 -1.14 0.80 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.25 6.95 -51.93 -0.36 0.88 16 24 H 0.03 0.45 6.68 -51.93 -0.35 0.10 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.34 3.92 6.98 -39.29 -0.27 3.64 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.20 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -31.44 309.42 -8.86 -40.30 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.98 Total: -0.18 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.02 Total: -14.48 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.49 Total: -46.68 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.44 -8.86 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.851 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds