Wall clock time and date at job start Sun Mar 29 2020 21:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47232 * 2 1 4 4 C 1.52997 * 109.47082 * 120.00222 * 2 1 3 5 5 C 1.50703 * 109.47044 * 294.99729 * 4 2 1 6 6 H 1.07998 * 119.99973 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99934 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00277 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99895 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47409 * 59.99660 * 9 7 5 11 11 H 1.48502 * 109.47185 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46947 * 299.99260 * 9 7 5 13 13 C 1.53003 * 109.47125 * 240.00014 * 2 1 3 14 14 N 1.46903 * 109.46899 * 64.99825 * 13 2 1 15 15 C 1.46898 * 110.99673 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47006 * 180.02562 * 15 14 13 17 17 N 1.46504 * 109.46883 * 180.02562 * 16 15 14 18 18 C 1.36874 * 126.39943 * 90.00176 * 17 16 15 19 19 C 1.34669 * 106.81918 * 179.97438 * 18 17 16 20 20 N 1.34123 * 108.02125 * 0.02562 * 19 18 17 21 21 C 1.30508 * 109.25485 * 359.72427 * 20 19 18 22 22 H 1.08990 * 109.47596 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47050 * 300.00421 * 1 2 3 24 24 H 1.09005 * 109.47199 * 59.99350 * 1 2 3 25 25 H 1.09004 * 109.47132 * 54.99655 * 4 2 1 26 26 H 1.08999 * 109.47269 * 174.99707 * 4 2 1 27 27 H 0.97002 * 120.00237 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.46902 * 305.00654 * 13 2 1 29 29 H 1.08993 * 109.47505 * 185.00149 * 13 2 1 30 30 H 1.00894 * 111.00528 * 303.95530 * 14 13 2 31 31 H 1.09001 * 109.47392 * 60.00807 * 15 14 13 32 32 H 1.09001 * 109.47520 * 300.00529 * 15 14 13 33 33 H 1.09001 * 109.47002 * 299.99782 * 16 15 14 34 34 H 1.08993 * 109.46955 * 60.00219 * 16 15 14 35 35 H 1.08001 * 126.59311 * 359.95764 * 18 17 16 36 36 H 1.08000 * 125.99191 * 179.97438 * 19 18 17 37 37 H 1.07997 * 125.65225 * 180.29380 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0807 0.9746 2.3757 7 6 1.9932 -0.4017 3.7282 8 7 2.6763 -1.5188 3.8511 9 14 1.4985 0.5626 5.2496 10 1 0.0185 0.6682 5.3092 11 1 1.9935 -0.1374 6.4621 12 1 2.0898 1.9234 5.1870 13 6 2.0400 -0.7213 -1.2493 14 7 1.6513 0.0374 -2.4456 15 6 2.1246 -0.6271 -3.6672 16 6 1.7023 0.1910 -4.8892 17 7 2.1738 -0.4721 -6.1075 18 6 1.4933 -1.4084 -6.8381 19 6 2.2873 -1.7493 -7.8709 20 7 3.4221 -1.0410 -7.7734 21 6 3.3590 -0.2697 -6.7225 22 1 -0.3634 -1.0275 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 1.6053 -1.7199 1.2951 26 1 3.1262 -0.7996 1.2055 27 1 2.9236 -1.8418 4.7317 28 1 1.6052 -1.7198 -1.2952 29 1 3.1262 -0.7995 -1.2057 30 1 0.6528 0.1793 -2.4753 31 1 1.6902 -1.6248 -3.7297 32 1 3.2115 -0.7052 -3.6406 33 1 0.6154 0.2693 -4.9161 34 1 2.1370 1.1885 -4.8266 35 1 0.5088 -1.7989 -6.6267 36 1 2.0521 -2.4679 -8.6421 37 1 4.1280 0.4153 -6.3973 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602505735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:11 Heat of formation + Delta-G solvation = 25.538702 kcal Electronic energy + Delta-G solvation = -16028.942135 eV Core-core repulsion = 13419.858459 eV Total energy + Delta-G solvation = -2609.083676 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.91215 -38.66521 -36.43198 -34.81095 -33.49707 -30.44833 -29.68396 -28.52787 -26.66083 -24.58966 -23.39540 -22.24249 -21.76138 -20.65989 -18.60022 -18.20563 -17.20672 -16.63951 -16.23985 -15.55235 -15.51620 -15.15258 -14.85304 -14.70161 -14.25114 -14.12598 -13.77858 -13.70555 -13.31921 -13.02841 -12.75910 -12.62489 -12.36877 -12.19934 -11.95625 -11.49774 -11.09257 -11.03528 -10.93371 -10.55084 -10.53134 -9.50854 -9.41995 -8.17704 -6.27050 1.14894 1.40777 1.43218 1.50875 1.85119 2.23793 2.42140 3.16001 3.24847 3.73772 3.90280 3.92149 4.10914 4.20461 4.22932 4.35461 4.45409 4.49739 4.63943 4.72206 4.82432 4.83356 4.86950 5.02322 5.23265 5.37227 5.38309 5.49812 5.54410 5.77297 5.84207 5.88347 5.94120 6.27644 6.29880 6.44022 6.89425 7.15379 7.41584 8.94208 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.069483 B = 0.003338 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.876806 B = 8385.169811 C = 8512.007705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 H 0.061 0.939 4 C 0.031 3.969 5 C -0.530 4.530 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.078 3.922 14 N -0.681 5.681 15 C 0.049 3.951 16 C 0.114 3.886 17 N -0.455 5.455 18 C -0.053 4.053 19 C -0.060 4.060 20 N -0.540 5.540 21 C 0.174 3.826 22 H 0.039 0.961 23 H 0.045 0.955 24 H 0.072 0.928 25 H -0.011 1.011 26 H -0.015 1.015 27 H 0.262 0.738 28 H 0.023 0.977 29 H 0.056 0.944 30 H 0.350 0.650 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.199 0.801 36 H 0.180 0.820 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 3.291 -18.466 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 H 0.079 0.921 4 C -0.006 4.006 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.051 4.051 14 N -0.314 5.314 15 C -0.081 4.081 16 C -0.008 4.008 17 N -0.138 5.138 18 C -0.187 4.187 19 C -0.207 4.207 20 N -0.259 5.259 21 C -0.108 4.108 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.007 0.993 26 H 0.003 0.997 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.170 0.830 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.216 0.784 36 H 0.197 0.803 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.988 3.627 -18.727 19.488 hybrid contribution -1.057 -0.793 1.629 2.098 sum -5.045 2.833 -17.098 18.050 Atomic orbital electron populations 1.21665 0.94728 1.00698 1.01401 1.21023 0.96407 0.99124 0.92925 0.92102 1.19014 0.94178 0.94589 0.92848 1.21632 1.34490 1.08619 0.92025 0.91866 1.25963 0.95266 0.96085 1.02726 1.70096 1.40316 1.23010 1.24346 0.85564 0.78980 0.78779 0.78130 1.19100 1.21212 1.19228 1.21828 0.99657 0.94247 0.89363 1.60384 1.20573 1.49877 1.00552 1.22192 1.01045 0.95541 0.89317 1.21886 1.02411 0.96890 0.79656 1.45677 1.15107 1.31644 1.21368 1.23206 1.01722 0.97690 0.96049 1.22685 0.91715 1.04488 1.01766 1.70260 1.25019 1.10699 1.19895 1.25522 0.90266 1.02871 0.92170 0.94198 0.93625 0.90928 0.99309 0.99652 0.92964 0.95827 0.92545 0.82952 0.95119 0.91423 0.87043 0.86540 0.78426 0.80258 0.75820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.77 71.98 0.63 -3.61 16 2 C -0.08 -2.90 2.54 -10.79 -0.03 -2.93 16 3 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.03 1.61 4.45 29.85 0.13 1.74 16 5 C -0.53 -29.36 8.41 25.60 0.22 -29.14 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -56.98 13.29 21.45 0.28 -56.70 16 9 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 C 0.08 2.47 5.14 86.30 0.44 2.91 16 14 N -0.68 -15.52 6.50 -513.87 -3.34 -18.86 16 15 C 0.05 0.92 6.01 86.31 0.52 1.44 16 16 C 0.11 1.49 6.41 86.38 0.55 2.04 16 17 N -0.46 -7.72 2.75 -529.06 -1.46 -9.17 16 18 C -0.05 -0.90 11.58 83.09 0.96 0.06 16 19 C -0.06 -1.24 11.87 83.52 0.99 -0.25 16 20 N -0.54 -13.50 11.25 -200.31 -2.25 -15.76 16 21 C 0.17 3.45 12.56 180.26 2.26 5.71 16 22 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.04 1.68 6.95 -2.39 -0.02 1.66 16 24 H 0.07 1.81 6.68 -2.38 -0.02 1.79 16 25 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.35 6.78 6.98 -89.70 -0.63 6.15 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.20 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.23 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -68.94 309.42 2.82 -66.12 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.41 Total: 10.25 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 7.15 Total: -21.75 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -6.76 Total: -100.49 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.94 2.82 -66.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.663 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds