Wall clock time and date at job start Sun Mar 29 2020 21:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47204 * 2 1 4 4 C 1.53007 * 109.47442 * 240.00011 * 2 1 3 5 5 C 1.50700 * 109.47074 * 64.99730 * 4 2 1 6 6 H 1.08004 * 119.99644 * 0.02562 * 5 4 2 7 7 C 1.37866 * 120.00020 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00236 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00135 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46700 * 60.00562 * 9 7 5 11 11 H 1.48499 * 109.47072 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47297 * 300.00536 * 9 7 5 13 13 C 1.53000 * 109.47190 * 119.99735 * 2 1 3 14 14 N 1.46900 * 109.47239 * 295.00144 * 13 2 1 15 15 C 1.46902 * 110.99869 * 179.97438 * 14 13 2 16 16 C 1.53004 * 109.47135 * 180.02562 * 15 14 13 17 17 N 1.46494 * 109.47106 * 179.97438 * 16 15 14 18 18 C 1.34954 * 126.03475 * 124.99860 * 17 16 15 19 19 C 1.35316 * 107.74368 * 179.73518 * 18 17 16 20 20 C 1.39868 * 107.92272 * 0.02562 * 19 18 17 21 21 N 1.30837 * 108.20148 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.47059 * 300.00152 * 1 2 3 23 23 H 1.09004 * 109.46883 * 60.00036 * 1 2 3 24 24 H 1.08993 * 109.46685 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47308 * 184.99978 * 4 2 1 26 26 H 1.08998 * 109.46449 * 305.00264 * 4 2 1 27 27 H 0.97005 * 120.00620 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47309 * 174.99657 * 13 2 1 29 29 H 1.09000 * 109.46847 * 55.00396 * 13 2 1 30 30 H 1.00895 * 110.99641 * 303.94711 * 14 13 2 31 31 H 1.09002 * 109.47301 * 59.99666 * 15 14 13 32 32 H 1.08998 * 109.47005 * 300.00204 * 15 14 13 33 33 H 1.08999 * 109.46666 * 59.99578 * 16 15 14 34 34 H 1.09007 * 109.46675 * 299.99950 * 16 15 14 35 35 H 1.07999 * 126.12395 * 359.71501 * 18 17 16 36 36 H 1.07999 * 126.03437 * 179.97438 * 19 18 17 37 37 H 1.08001 * 125.89990 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7282 8 7 2.6748 -1.5197 -3.8512 9 14 1.4976 0.5621 -5.2497 10 1 2.0898 1.9226 -5.1877 11 1 1.9928 -0.1379 -6.4622 12 1 0.0177 0.6686 -5.3087 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6271 3.6672 16 6 1.7014 0.1904 4.8893 17 7 2.1729 -0.4727 6.1076 18 6 2.9376 0.0849 7.0697 19 6 3.1481 -0.8516 8.0235 20 6 2.4902 -2.0216 7.6305 21 7 1.9051 -1.7956 6.4823 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0276 -0.0005 25 1 3.1264 -0.7995 -1.2056 26 1 1.6054 -1.7198 -1.2951 27 1 2.9215 -1.8431 -4.7319 28 1 3.1263 -0.7995 1.2056 29 1 1.6054 -1.7197 1.2952 30 1 1.9882 0.9873 2.3967 31 1 3.2117 -0.7051 3.6406 32 1 1.6904 -1.6248 3.7297 33 1 0.6145 0.2679 4.9157 34 1 2.1355 1.1884 4.8270 35 1 3.3142 1.0970 7.0769 36 1 3.7234 -0.7192 8.9279 37 1 2.4687 -2.9512 8.1800 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602519348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:05 Heat of formation + Delta-G solvation = 60.910590 kcal Electronic energy + Delta-G solvation = -15992.049933 eV Core-core repulsion = 13384.500096 eV Total energy + Delta-G solvation = -2607.549836 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24664 -37.21508 -34.88043 -32.96440 -31.72585 -30.24888 -28.23543 -26.71796 -25.01445 -23.11651 -22.12765 -21.19492 -20.68089 -19.09127 -17.37852 -16.33025 -16.11309 -14.90965 -14.71608 -14.68724 -14.31670 -13.93791 -13.58819 -13.38740 -12.92052 -12.60898 -12.33133 -12.04806 -11.61587 -11.49874 -11.29239 -10.85164 -10.78745 -10.71713 -10.30887 -10.28559 -9.72296 -9.59073 -9.17608 -8.99126 -8.75222 -8.33337 -8.27888 -5.97925 -3.99472 1.75297 2.33551 2.70008 3.34007 3.38515 3.40796 4.17425 4.45100 4.50606 4.67789 4.87582 4.92394 5.12295 5.33064 5.37728 5.54206 5.64032 5.65398 5.81294 5.84972 5.89784 6.12041 6.37473 6.48695 6.50580 6.65143 6.83932 6.96381 7.13329 7.16483 7.26089 7.52164 7.56407 7.68190 7.83912 8.01868 8.45406 9.06690 9.63962 11.13603 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.069837 B = 0.003336 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.837312 B = 8391.029519 C = 8517.071571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.066 3.934 14 N -0.685 5.685 15 C 0.049 3.951 16 C 0.134 3.866 17 N -0.368 5.368 18 C 0.052 3.948 19 C -0.279 4.279 20 C 0.039 3.961 21 N -0.291 5.291 22 H 0.041 0.959 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.012 0.988 26 H 0.017 0.983 27 H 0.260 0.740 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.337 0.663 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.172 0.828 36 H 0.145 0.855 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 3.773 21.013 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.063 4.063 14 N -0.316 5.316 15 C -0.081 4.081 16 C 0.013 3.987 17 N -0.150 5.150 18 C -0.095 4.095 19 C -0.309 4.309 20 C -0.147 4.147 21 N -0.113 5.113 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.189 0.811 36 H 0.163 0.837 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.788 2.950 19.836 20.069 hybrid contribution 1.370 1.007 -0.268 1.721 sum 0.582 3.957 19.567 19.972 Atomic orbital electron populations 1.21594 0.95622 1.00681 1.00160 1.21215 0.96090 0.98897 0.93926 0.92774 1.19119 0.95907 0.95627 0.90376 1.21192 1.34757 1.08306 0.90986 0.92592 1.25021 0.95315 0.95095 0.99109 1.69954 1.39032 1.21174 1.23520 0.86682 0.78924 0.80066 0.82470 1.20320 1.21359 1.20237 1.22170 0.97338 0.97805 0.88950 1.60472 1.63950 1.05789 1.01362 1.22132 0.97844 0.99253 0.88900 1.21716 1.01485 0.94916 0.80598 1.48757 1.39472 1.09255 1.17550 1.22600 0.96493 1.00056 0.90319 1.21503 1.11745 0.94043 1.03605 1.23908 0.97152 0.99619 0.93998 1.77402 1.23712 0.94612 1.15574 0.93954 0.92701 0.94093 0.96940 0.96503 0.93008 0.95575 0.91298 0.84591 0.95117 0.89659 0.88702 0.88795 0.81068 0.83687 0.80156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.83 -0.10 1.50 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.07 1.13 5.07 -3.82 -0.02 1.11 16 14 N -0.68 -9.45 5.96 -113.77 -0.68 -10.12 16 15 C 0.05 0.61 5.88 -3.82 -0.02 0.59 16 16 C 0.13 1.34 6.77 -4.04 -0.03 1.32 16 17 N -0.37 -4.17 3.68 -61.36 -0.23 -4.39 16 18 C 0.05 0.48 11.45 -17.22 -0.20 0.28 16 19 C -0.28 -2.56 10.80 -40.01 -0.43 -2.99 16 20 C 0.04 0.41 12.03 -17.37 -0.21 0.20 16 21 N -0.29 -3.83 12.42 30.62 0.38 -3.45 16 22 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 23 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.34 4.13 8.73 -39.29 -0.34 3.79 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.69 8.07 -51.92 -0.42 0.27 16 35 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -31.96 312.20 -7.52 -39.48 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.10 Total: -0.46 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -1.31 Total: -16.07 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.21 Total: -44.36 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.96 -7.52 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.387 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds