Wall clock time and date at job start Sun Mar 29 2020 21:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47204 * 2 1 4 4 C 1.53007 * 109.47442 * 240.00011 * 2 1 3 5 5 C 1.50700 * 109.47074 * 64.99730 * 4 2 1 6 6 H 1.08004 * 119.99644 * 0.02562 * 5 4 2 7 7 C 1.37866 * 120.00020 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00236 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00135 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46700 * 60.00562 * 9 7 5 11 11 H 1.48499 * 109.47072 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47297 * 300.00536 * 9 7 5 13 13 C 1.53000 * 109.47190 * 119.99735 * 2 1 3 14 14 N 1.46900 * 109.47239 * 295.00144 * 13 2 1 15 15 C 1.46902 * 110.99869 * 179.97438 * 14 13 2 16 16 C 1.53004 * 109.47135 * 180.02562 * 15 14 13 17 17 N 1.46494 * 109.47106 * 179.97438 * 16 15 14 18 18 C 1.34954 * 126.03475 * 124.99860 * 17 16 15 19 19 C 1.35316 * 107.74368 * 179.73518 * 18 17 16 20 20 C 1.39868 * 107.92272 * 0.02562 * 19 18 17 21 21 N 1.30837 * 108.20148 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.47059 * 300.00152 * 1 2 3 23 23 H 1.09004 * 109.46883 * 60.00036 * 1 2 3 24 24 H 1.08993 * 109.46685 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47308 * 184.99978 * 4 2 1 26 26 H 1.08998 * 109.46449 * 305.00264 * 4 2 1 27 27 H 0.97005 * 120.00620 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47309 * 174.99657 * 13 2 1 29 29 H 1.09000 * 109.46847 * 55.00396 * 13 2 1 30 30 H 1.00895 * 110.99641 * 303.94711 * 14 13 2 31 31 H 1.09002 * 109.47301 * 59.99666 * 15 14 13 32 32 H 1.08998 * 109.47005 * 300.00204 * 15 14 13 33 33 H 1.08999 * 109.46666 * 59.99578 * 16 15 14 34 34 H 1.09007 * 109.46675 * 299.99950 * 16 15 14 35 35 H 1.07999 * 126.12395 * 359.71501 * 18 17 16 36 36 H 1.07999 * 126.03437 * 179.97438 * 19 18 17 37 37 H 1.08001 * 125.89990 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7282 8 7 2.6748 -1.5197 -3.8512 9 14 1.4976 0.5621 -5.2497 10 1 2.0898 1.9226 -5.1877 11 1 1.9928 -0.1379 -6.4622 12 1 0.0177 0.6686 -5.3087 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6271 3.6672 16 6 1.7014 0.1904 4.8893 17 7 2.1729 -0.4727 6.1076 18 6 2.9376 0.0849 7.0697 19 6 3.1481 -0.8516 8.0235 20 6 2.4902 -2.0216 7.6305 21 7 1.9051 -1.7956 6.4823 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0276 -0.0005 25 1 3.1264 -0.7995 -1.2056 26 1 1.6054 -1.7198 -1.2951 27 1 2.9215 -1.8431 -4.7319 28 1 3.1263 -0.7995 1.2056 29 1 1.6054 -1.7197 1.2952 30 1 1.9882 0.9873 2.3967 31 1 3.2117 -0.7051 3.6406 32 1 1.6904 -1.6248 3.7297 33 1 0.6145 0.2679 4.9157 34 1 2.1355 1.1884 4.8270 35 1 3.3142 1.0970 7.0769 36 1 3.7234 -0.7192 8.9279 37 1 2.4687 -2.9512 8.1800 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602519348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:05 Heat of formation + Delta-G solvation = 39.856409 kcal Electronic energy + Delta-G solvation = -15992.962910 eV Core-core repulsion = 13384.500096 eV Total energy + Delta-G solvation = -2608.462814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.98391 -38.57892 -36.30048 -34.55672 -33.22988 -31.02116 -29.48868 -28.47090 -26.49146 -24.60882 -23.48864 -21.90976 -21.54234 -20.71045 -18.53043 -18.06596 -17.18625 -16.58951 -15.99033 -15.68549 -15.55250 -15.23251 -14.65753 -14.55156 -14.17680 -13.86045 -13.55080 -13.44007 -13.27583 -12.92699 -12.73373 -12.66449 -12.34151 -12.21399 -11.99158 -11.53559 -11.48407 -11.11015 -10.96545 -10.53686 -10.37870 -9.51495 -9.46279 -8.17845 -6.27518 1.02328 1.40319 1.43279 1.50902 1.60786 1.99096 2.41937 3.15374 3.15999 3.63976 3.96839 4.08857 4.10628 4.17413 4.30217 4.32124 4.50205 4.57879 4.74333 4.86289 4.87153 4.92498 4.94882 5.01375 5.18248 5.27037 5.45392 5.50695 5.53689 5.75527 5.80088 5.87646 5.89343 6.17716 6.29070 6.44306 6.81164 6.88729 7.41089 8.94233 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.069837 B = 0.003336 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.837312 B = 8391.029519 C = 8517.071571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 H 0.061 0.939 4 C 0.031 3.969 5 C -0.530 4.530 6 H 0.064 0.936 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.079 3.921 14 N -0.676 5.676 15 C 0.058 3.942 16 C 0.140 3.860 17 N -0.381 5.381 18 C 0.053 3.947 19 C -0.288 4.288 20 C 0.032 3.968 21 N -0.345 5.345 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.031 0.969 25 H -0.014 1.014 26 H -0.013 1.013 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.351 0.649 31 H 0.026 0.974 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.209 0.791 36 H 0.169 0.831 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 5.953 22.133 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 H 0.080 0.920 4 C -0.007 4.007 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.051 4.051 14 N -0.309 5.309 15 C -0.072 4.072 16 C 0.019 3.981 17 N -0.164 5.164 18 C -0.093 4.093 19 C -0.317 4.317 20 C -0.154 4.154 21 N -0.167 5.167 22 H 0.089 0.911 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.004 0.996 26 H 0.005 0.995 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.146 0.854 35 H 0.225 0.775 36 H 0.187 0.813 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.991 5.147 20.983 21.628 hybrid contribution 1.472 0.296 -0.538 1.594 sum 0.481 5.443 20.445 21.163 Atomic orbital electron populations 1.21502 0.94595 1.00283 1.00780 1.21016 0.96781 0.98661 0.92717 0.92024 1.19023 0.94076 0.94658 0.92906 1.21624 1.34495 1.08664 0.91978 0.91784 1.25983 0.95244 0.96100 1.02779 1.70102 1.40371 1.22997 1.24365 0.85540 0.78950 0.78794 0.78016 1.19039 1.21157 1.19200 1.21838 0.96625 0.97254 0.89352 1.60325 1.63889 1.06201 1.00449 1.21999 0.97234 0.98600 0.89382 1.21694 1.01627 0.95663 0.79123 1.48861 1.40278 1.09016 1.18250 1.23277 0.95141 1.01514 0.89335 1.21896 1.11743 0.93483 1.04588 1.24426 0.96445 1.01033 0.93448 1.77346 1.25860 0.96259 1.17230 0.91083 0.94150 0.95021 0.99613 0.99482 0.92946 0.96267 0.92567 0.82996 0.95596 0.92104 0.88961 0.85350 0.77471 0.81323 0.78179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 2 C -0.07 -2.93 2.48 -10.79 -0.03 -2.96 16 3 H 0.06 2.39 8.14 -2.38 -0.02 2.38 16 4 C 0.03 1.64 4.45 29.85 0.13 1.77 16 5 C -0.53 -29.95 8.41 25.60 0.22 -29.73 16 6 H 0.06 3.44 7.06 -2.91 -0.02 3.42 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -57.91 13.29 21.44 0.28 -57.63 16 9 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 C 0.08 2.70 5.07 86.30 0.44 3.14 16 14 N -0.68 -17.63 5.96 -513.87 -3.06 -20.69 16 15 C 0.06 1.39 5.88 86.30 0.51 1.90 16 16 C 0.14 2.51 6.77 86.38 0.58 3.10 16 17 N -0.38 -8.03 3.68 -348.05 -1.28 -9.31 16 18 C 0.05 0.83 11.45 83.54 0.96 1.79 16 19 C -0.29 -4.65 10.80 21.99 0.24 -4.41 16 20 C 0.03 0.64 12.03 85.24 1.02 1.66 16 21 N -0.34 -8.94 12.42 -57.02 -0.71 -9.65 16 22 H 0.07 2.27 7.75 -2.39 -0.02 2.25 16 23 H 0.04 1.62 6.95 -2.38 -0.02 1.60 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 27 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.35 7.67 8.73 -89.70 -0.78 6.89 16 31 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.13 1.40 8.07 -2.38 -0.02 1.38 16 35 H 0.21 1.48 8.06 -2.91 -0.02 1.45 16 36 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -70.39 312.20 2.68 -67.70 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.25 Total: 10.25 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 5.17 Total: -27.18 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -4.76 Total: -97.27 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -70.39 2.68 -67.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.560 kcal (2) G-P(sol) polarization free energy of solvation -70.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds