Wall clock time and date at job start Sun Mar 29 2020 21:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46870 * 2 1 4 4 C 1.35967 * 126.07122 * 125.00176 * 3 2 1 5 5 C 1.35707 * 107.55013 * 179.97438 * 4 3 2 6 6 N 1.40796 * 126.06826 * 180.02562 * 5 4 3 7 7 C 1.46508 * 120.00250 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.46965 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47348 * 305.00188 * 8 7 6 10 10 C 1.52998 * 109.47137 * 65.00559 * 8 7 6 11 11 C 1.53002 * 109.46765 * 185.00178 * 8 7 6 12 12 C 1.50703 * 109.47094 * 175.00002 * 11 8 7 13 13 H 1.08001 * 119.99792 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99922 * 180.02562 * 12 11 8 15 15 N 1.31516 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99683 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47195 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46990 * 119.99937 * 16 14 12 19 19 H 1.48501 * 109.46970 * 239.99826 * 16 14 12 20 20 C 1.40225 * 107.86485 * 359.97438 * 5 4 3 21 21 N 1.30859 * 108.36294 * 0.02562 * 20 5 4 22 22 H 1.08998 * 109.46829 * 300.00237 * 1 2 3 23 23 H 1.08993 * 109.47168 * 60.00466 * 1 2 3 24 24 H 1.08998 * 109.46571 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47447 * 239.99917 * 2 1 3 26 26 H 1.09002 * 109.47303 * 119.99388 * 2 1 3 27 27 H 1.07991 * 126.22486 * 359.97199 * 4 3 2 28 28 H 0.97003 * 119.99890 * 359.97438 * 6 5 4 29 29 H 1.08996 * 109.46833 * 300.00447 * 7 6 5 30 30 H 1.08999 * 109.46819 * 59.99968 * 7 6 5 31 31 H 1.09010 * 109.47109 * 179.97438 * 10 8 7 32 32 H 1.08997 * 109.47052 * 299.99263 * 10 8 7 33 33 H 1.08998 * 109.47707 * 59.99720 * 10 8 7 34 34 H 1.08999 * 109.47322 * 294.99778 * 11 8 7 35 35 H 1.09002 * 109.47313 * 55.00195 * 11 8 7 36 36 H 0.96992 * 119.99612 * 180.02562 * 15 14 12 37 37 H 1.08002 * 125.81251 * 179.73490 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8795 1.9259 0.9002 5 6 3.0757 3.2214 0.5468 6 7 3.8999 4.1471 1.2146 7 6 4.0151 5.5194 0.7147 8 6 4.9653 6.3120 1.6146 9 1 4.6214 6.2530 2.6473 10 6 6.3741 5.7242 1.5118 11 6 4.9893 7.7751 1.1677 12 6 5.8279 8.5797 2.1271 13 1 6.2972 8.0958 2.9709 14 6 5.9960 9.9336 1.9276 15 7 5.4249 10.5227 0.8998 16 14 7.0361 10.9307 3.1165 17 1 7.5641 10.0391 4.1802 18 1 8.1684 11.5515 2.3830 19 1 6.2022 11.9944 3.7317 20 6 2.3128 3.4741 -0.6023 21 7 1.6816 2.3750 -0.9280 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.3261 1.4198 1.7432 28 1 4.3915 3.8763 2.0058 29 1 4.4068 5.5038 -0.3024 30 1 3.0325 5.9911 0.7183 31 1 7.0512 6.2891 2.1527 32 1 6.3570 4.6819 1.8302 33 1 6.7180 5.7831 0.4792 34 1 5.4164 7.8424 0.1672 35 1 3.9727 8.1681 1.1560 36 1 5.5436 11.4750 0.7593 37 1 2.2524 4.4166 -1.1262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602576997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:49 Heat of formation + Delta-G solvation = 60.834572 kcal Electronic energy + Delta-G solvation = -16191.148963 eV Core-core repulsion = 13583.595830 eV Total energy + Delta-G solvation = -2607.553133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84980 -36.73919 -34.60681 -33.27711 -31.82235 -30.07066 -28.13416 -26.74747 -25.24257 -23.83706 -22.68563 -20.93109 -19.92277 -19.01445 -17.11645 -16.38070 -15.52954 -15.34655 -14.64903 -14.45522 -14.08119 -14.05614 -13.79043 -12.81761 -12.67955 -12.45527 -12.26335 -12.15186 -11.93134 -11.59644 -11.47077 -10.90385 -10.85701 -10.56177 -10.36079 -10.26927 -9.94219 -9.54567 -9.24568 -9.18738 -8.98930 -8.34496 -6.75910 -5.98956 -4.00376 2.04360 2.59502 3.20693 3.31490 3.39256 3.42680 4.03621 4.46942 4.52600 4.79389 4.95077 5.03485 5.24047 5.37040 5.38538 5.55105 5.67493 5.77738 5.82294 5.86595 5.99387 6.03791 6.32440 6.43976 6.54500 6.62934 6.93890 7.07714 7.11467 7.17782 7.67223 7.75939 7.81847 7.88419 8.00825 8.30508 8.43761 9.05872 9.63196 11.12555 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.068701 B = 0.003717 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.468220 B = 7531.510568 C = 7735.498352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.377 5.377 4 C -0.050 4.050 5 C 0.078 3.922 6 N -0.742 5.742 7 C 0.139 3.861 8 C -0.095 4.095 9 H 0.060 0.940 10 C -0.130 4.130 11 C 0.029 3.971 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.009 3.991 21 N -0.279 5.279 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.165 0.835 28 H 0.394 0.606 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.018 0.982 35 H 0.017 0.983 36 H 0.259 0.741 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.049 -19.309 -0.324 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 N -0.167 5.167 4 C -0.197 4.197 5 C -0.031 4.031 6 N -0.379 5.379 7 C 0.015 3.985 8 C -0.114 4.114 9 H 0.079 0.921 10 C -0.188 4.188 11 C -0.008 4.008 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.179 4.179 21 N -0.102 5.102 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.182 0.818 28 H 0.229 0.771 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.933 -19.648 -1.337 20.878 hybrid contribution 1.352 0.987 1.516 2.258 sum -5.581 -18.661 0.179 19.479 Atomic orbital electron populations 1.22072 0.94300 1.02409 1.03572 1.21478 0.95550 0.77843 1.03112 1.48158 1.37263 1.09522 1.21788 1.21577 1.03460 0.94313 1.00326 1.17854 0.99098 0.89970 0.96180 1.44105 1.51913 1.09382 1.32485 1.21413 0.99077 0.80377 0.97592 1.21407 0.93636 0.98002 0.98343 0.92123 1.21701 0.97654 0.97914 1.01483 1.19087 0.97267 0.87670 0.96800 1.21251 1.30413 0.92978 1.10606 0.92534 1.25019 0.96008 0.98028 0.95470 1.69970 1.44243 1.10580 1.28683 0.86574 0.80221 0.80239 0.81191 1.19788 1.21082 1.21085 1.23581 0.98824 0.98011 0.97519 1.77092 1.22812 0.96593 1.13681 0.92146 0.91184 0.91103 0.90451 0.89139 0.81810 0.77147 0.93407 0.93345 0.92015 0.95061 0.93589 0.96343 0.96466 0.93092 0.80347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.10 37.16 0.38 -0.90 16 2 C 0.14 1.18 7.24 -4.04 -0.03 1.15 16 3 N -0.38 -4.75 3.71 -61.00 -0.23 -4.98 16 4 C -0.05 -0.64 11.52 -16.62 -0.19 -0.83 16 5 C 0.08 1.15 6.96 -83.90 -0.58 0.57 16 6 N -0.74 -11.15 5.53 -58.79 -0.33 -11.47 16 7 C 0.14 2.39 5.02 -4.04 -0.02 2.37 16 8 C -0.09 -1.87 2.37 -90.62 -0.22 -2.08 16 9 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 10 C -0.13 -2.38 8.88 37.16 0.33 -2.05 16 11 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 12 C -0.51 -14.15 8.41 -34.44 -0.29 -14.44 16 13 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.01 0.14 11.34 -17.22 -0.20 -0.06 16 21 N -0.28 -4.18 12.41 30.70 0.38 -3.80 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 27 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.39 5.45 7.79 -40.82 -0.32 5.13 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.21 6.95 -51.92 -0.36 0.85 16 32 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 37 H 0.18 2.48 7.90 -52.49 -0.41 2.07 16 LS Contribution 310.27 15.07 4.68 4.68 Total: -1.00 -31.15 310.27 -6.86 -38.02 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.04 Total: 1.21 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.04 Total: -14.18 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.57 Total: -46.20 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.15 -6.86 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602576997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.850 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds