Wall clock time and date at job start Sun Mar 29 2020 21:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46870 * 2 1 4 4 C 1.35967 * 126.07122 * 125.00176 * 3 2 1 5 5 C 1.35707 * 107.55013 * 179.97438 * 4 3 2 6 6 N 1.40796 * 126.06826 * 180.02562 * 5 4 3 7 7 C 1.46508 * 120.00250 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.46965 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47348 * 305.00188 * 8 7 6 10 10 C 1.52998 * 109.47137 * 65.00559 * 8 7 6 11 11 C 1.53002 * 109.46765 * 185.00178 * 8 7 6 12 12 C 1.50703 * 109.47094 * 175.00002 * 11 8 7 13 13 H 1.08001 * 119.99792 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99922 * 180.02562 * 12 11 8 15 15 N 1.31516 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99683 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47195 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46990 * 119.99937 * 16 14 12 19 19 H 1.48501 * 109.46970 * 239.99826 * 16 14 12 20 20 C 1.40225 * 107.86485 * 359.97438 * 5 4 3 21 21 N 1.30859 * 108.36294 * 0.02562 * 20 5 4 22 22 H 1.08998 * 109.46829 * 300.00237 * 1 2 3 23 23 H 1.08993 * 109.47168 * 60.00466 * 1 2 3 24 24 H 1.08998 * 109.46571 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47447 * 239.99917 * 2 1 3 26 26 H 1.09002 * 109.47303 * 119.99388 * 2 1 3 27 27 H 1.07991 * 126.22486 * 359.97199 * 4 3 2 28 28 H 0.97003 * 119.99890 * 359.97438 * 6 5 4 29 29 H 1.08996 * 109.46833 * 300.00447 * 7 6 5 30 30 H 1.08999 * 109.46819 * 59.99968 * 7 6 5 31 31 H 1.09010 * 109.47109 * 179.97438 * 10 8 7 32 32 H 1.08997 * 109.47052 * 299.99263 * 10 8 7 33 33 H 1.08998 * 109.47707 * 59.99720 * 10 8 7 34 34 H 1.08999 * 109.47322 * 294.99778 * 11 8 7 35 35 H 1.09002 * 109.47313 * 55.00195 * 11 8 7 36 36 H 0.96992 * 119.99612 * 180.02562 * 15 14 12 37 37 H 1.08002 * 125.81251 * 179.73490 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8795 1.9259 0.9002 5 6 3.0757 3.2214 0.5468 6 7 3.8999 4.1471 1.2146 7 6 4.0151 5.5194 0.7147 8 6 4.9653 6.3120 1.6146 9 1 4.6214 6.2530 2.6473 10 6 6.3741 5.7242 1.5118 11 6 4.9893 7.7751 1.1677 12 6 5.8279 8.5797 2.1271 13 1 6.2972 8.0958 2.9709 14 6 5.9960 9.9336 1.9276 15 7 5.4249 10.5227 0.8998 16 14 7.0361 10.9307 3.1165 17 1 7.5641 10.0391 4.1802 18 1 8.1684 11.5515 2.3830 19 1 6.2022 11.9944 3.7317 20 6 2.3128 3.4741 -0.6023 21 7 1.6816 2.3750 -0.9280 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.3261 1.4198 1.7432 28 1 4.3915 3.8763 2.0058 29 1 4.4068 5.5038 -0.3024 30 1 3.0325 5.9911 0.7183 31 1 7.0512 6.2891 2.1527 32 1 6.3570 4.6819 1.8302 33 1 6.7180 5.7831 0.4792 34 1 5.4164 7.8424 0.1672 35 1 3.9727 8.1681 1.1560 36 1 5.5436 11.4750 0.7593 37 1 2.2524 4.4166 -1.1262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602576997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:49 Heat of formation + Delta-G solvation = 41.479491 kcal Electronic energy + Delta-G solvation = -16191.988262 eV Core-core repulsion = 13583.595830 eV Total energy + Delta-G solvation = -2608.392432 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.88388 -38.20912 -35.78536 -34.73614 -33.50786 -31.04182 -29.49064 -28.42885 -26.72453 -24.70425 -24.47595 -21.95711 -21.08632 -20.51809 -18.49447 -18.09570 -16.65074 -16.48448 -16.27824 -15.92471 -15.38955 -15.14582 -14.70805 -14.35015 -14.20795 -13.85527 -13.41521 -13.26462 -13.16173 -12.89480 -12.77421 -12.63629 -12.31594 -12.22542 -11.95355 -11.63774 -11.53111 -11.11798 -10.96889 -10.80008 -10.52093 -10.19653 -8.15619 -7.88291 -6.24497 1.01918 1.41720 1.42381 1.54904 1.72116 2.09291 2.43463 2.86664 3.18393 3.80241 4.08010 4.17011 4.19317 4.26961 4.29378 4.45256 4.47388 4.68148 4.80643 4.86438 4.88812 4.91925 5.01698 5.04156 5.25904 5.28414 5.37172 5.50133 5.52786 5.58416 5.82566 5.90406 6.26303 6.30050 6.58016 6.80383 6.91978 7.21736 7.43846 8.96747 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.068701 B = 0.003717 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.468220 B = 7531.510568 C = 7735.498352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 N -0.373 5.373 4 C -0.029 4.029 5 C 0.048 3.952 6 N -0.738 5.738 7 C 0.156 3.844 8 C -0.083 4.083 9 H 0.062 0.938 10 C -0.122 4.122 11 C 0.033 3.967 12 C -0.527 4.527 13 H 0.064 0.936 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.961 3.039 17 H -0.260 1.260 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.012 4.012 21 N -0.305 5.305 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.201 0.799 28 H 0.402 0.598 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.038 0.962 34 H -0.007 1.007 35 H -0.011 1.011 36 H 0.261 0.739 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 -21.599 1.308 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 N -0.162 5.162 4 C -0.177 4.177 5 C -0.060 4.060 6 N -0.377 5.377 7 C 0.031 3.969 8 C -0.102 4.102 9 H 0.081 0.919 10 C -0.179 4.179 11 C -0.005 4.005 12 C -0.565 4.565 13 H 0.082 0.918 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.786 3.214 17 H -0.184 1.184 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.199 4.199 21 N -0.130 5.130 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.119 0.881 25 H 0.106 0.894 26 H 0.143 0.857 27 H 0.218 0.782 28 H 0.238 0.762 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.011 0.989 35 H 0.007 0.993 36 H 0.070 0.930 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.314 -21.984 0.293 22.874 hybrid contribution 1.081 1.570 0.983 2.145 sum -5.232 -20.413 1.277 21.112 Atomic orbital electron populations 1.22032 0.93977 1.03850 1.01970 1.21946 0.95887 0.75865 1.05331 1.48655 1.36337 1.10451 1.20738 1.22140 1.01797 0.93538 1.00244 1.18024 1.00234 0.90938 0.96781 1.43764 1.52659 1.08318 1.32927 1.21003 0.97645 0.81573 0.96675 1.21175 0.95503 0.94966 0.98580 0.91945 1.21608 0.95875 0.99615 1.00852 1.18975 0.94966 0.91231 0.95287 1.21670 1.30315 0.93554 1.10969 0.91827 1.25951 0.97371 0.99474 0.97253 1.70109 1.45881 1.10984 1.30669 0.85461 0.78366 0.78560 0.79041 1.18403 1.20686 1.20727 1.23672 0.99606 0.98314 0.98273 1.77053 1.23658 0.97237 1.15017 0.93104 0.93370 0.88145 0.89387 0.85743 0.78250 0.76194 0.94078 0.94561 0.93479 0.91584 0.94268 0.98910 0.99251 0.92984 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 10.10 71.98 0.73 -1.39 16 2 C 0.13 1.74 7.24 86.38 0.63 2.37 16 3 N -0.37 -8.56 3.71 -346.90 -1.29 -9.84 16 4 C -0.03 -0.66 11.52 83.47 0.96 0.31 16 5 C 0.05 1.36 6.96 37.60 0.26 1.62 16 6 N -0.74 -21.19 5.53 -339.93 -1.88 -23.07 16 7 C 0.16 5.40 5.02 86.38 0.43 5.84 16 8 C -0.08 -3.28 2.37 -10.79 -0.03 -3.30 16 9 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 10 C -0.12 -4.32 8.88 71.98 0.64 -3.68 16 11 C 0.03 1.71 4.45 29.85 0.13 1.84 16 12 C -0.53 -29.31 8.41 25.60 0.22 -29.09 16 13 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 14 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 15 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 16 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 C -0.01 -0.36 11.34 85.32 0.97 0.61 16 21 N -0.31 -9.02 12.41 -56.77 -0.70 -9.73 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.12 0.87 8.07 -2.39 -0.02 0.85 16 27 H 0.20 2.94 8.06 -2.92 -0.02 2.92 16 28 H 0.40 10.11 7.79 -92.71 -0.72 9.39 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.79 6.95 -2.38 -0.02 1.77 16 32 H 0.07 1.87 7.18 -2.39 -0.02 1.85 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.18 5.15 7.90 -2.91 -0.02 5.13 16 Total: -1.00 -68.28 310.27 4.16 -64.12 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.31 Total: 13.75 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 5.40 Total: -24.62 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -3.59 Total: -99.45 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -68.28 4.16 -64.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602576997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.603 kcal (2) G-P(sol) polarization free energy of solvation -68.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds