Wall clock time and date at job start Sun Mar 29 2020 21:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47100 * 2 1 4 4 C 1.35966 * 126.07390 * 125.00389 * 3 2 1 5 5 C 1.35705 * 107.55489 * 179.97438 * 4 3 2 6 6 N 1.40796 * 126.06642 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99804 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47197 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46716 * 55.00281 * 8 7 6 10 10 C 1.53000 * 109.47171 * 295.00385 * 8 7 6 11 11 C 1.52992 * 109.47419 * 175.00317 * 8 7 6 12 12 C 1.50702 * 109.47440 * 185.00360 * 11 8 7 13 13 H 1.08001 * 119.99546 * 359.97438 * 12 11 8 14 14 C 1.37874 * 119.99952 * 180.02562 * 12 11 8 15 15 N 1.31515 * 120.00489 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99893 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46972 * 59.99801 * 16 14 12 18 18 H 1.48493 * 109.47564 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47012 * 300.00171 * 16 14 12 20 20 C 1.40215 * 107.86352 * 0.02562 * 5 4 3 21 21 N 1.30860 * 108.36639 * 359.97438 * 20 5 4 22 22 H 1.08994 * 109.47357 * 59.99742 * 1 2 3 23 23 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46776 * 299.99758 * 1 2 3 25 25 H 1.09002 * 109.46776 * 240.00242 * 2 1 3 26 26 H 1.08994 * 109.47357 * 120.00258 * 2 1 3 27 27 H 1.07998 * 126.22076 * 0.23821 * 4 3 2 28 28 H 0.97000 * 119.99963 * 0.02562 * 6 5 4 29 29 H 1.08997 * 109.47418 * 300.00405 * 7 6 5 30 30 H 1.09004 * 109.47111 * 60.01032 * 7 6 5 31 31 H 1.08992 * 109.47055 * 300.00051 * 10 8 7 32 32 H 1.09008 * 109.47047 * 59.99950 * 10 8 7 33 33 H 1.08998 * 109.47251 * 179.97438 * 10 8 7 34 34 H 1.09006 * 109.46880 * 304.99994 * 11 8 7 35 35 H 1.09002 * 109.47097 * 64.99735 * 11 8 7 36 36 H 0.96994 * 120.00542 * 180.02562 * 15 14 12 37 37 H 1.08003 * 125.81684 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8795 1.9259 0.9002 5 6 3.0758 3.2213 0.5468 6 7 3.8993 4.1472 1.2153 7 6 4.0147 5.5194 0.7152 8 6 4.9640 6.3123 1.6159 9 1 5.9197 5.7925 1.6833 10 6 4.3535 6.4405 3.0129 11 6 5.1823 7.7065 1.0249 12 6 6.2108 8.4437 1.8432 13 1 6.6632 7.9657 2.6996 14 6 6.5735 9.7287 1.4993 15 7 6.0222 10.3109 0.4569 16 14 7.8479 10.6427 2.5142 17 1 9.1284 9.8909 2.4943 18 1 8.0590 11.9963 1.9412 19 1 7.3689 10.7676 3.9143 20 6 2.3120 3.4743 -0.6015 21 7 1.6811 2.3752 -0.9275 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.3293 1.4185 1.7408 28 1 4.3908 3.8764 2.0064 29 1 4.4072 5.5038 -0.3015 30 1 3.0319 5.9910 0.7182 31 1 3.3978 6.9602 2.9455 32 1 4.1980 5.4472 3.4341 33 1 5.0300 7.0050 3.6547 34 1 5.5337 7.6144 -0.0029 35 1 4.2425 8.2585 1.0395 36 1 6.2776 11.2148 0.2147 37 1 2.2542 4.4159 -1.1274 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602576998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:51 Heat of formation + Delta-G solvation = 60.908277 kcal Electronic energy + Delta-G solvation = -16193.021887 eV Core-core repulsion = 13585.471951 eV Total energy + Delta-G solvation = -2607.549936 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85028 -36.73905 -34.60741 -33.27678 -31.82152 -30.07096 -28.13407 -26.74648 -25.24152 -23.83757 -22.68308 -20.93131 -19.92241 -19.01204 -17.11594 -16.37650 -15.51872 -15.37869 -14.59295 -14.37867 -14.28841 -14.01997 -13.72036 -12.91506 -12.54994 -12.48669 -12.28687 -12.09592 -11.97936 -11.60100 -11.45466 -10.89050 -10.86137 -10.56189 -10.38088 -10.27152 -9.93836 -9.54418 -9.24073 -9.18740 -9.01004 -8.33714 -6.75906 -5.98454 -4.00132 2.04367 2.59503 3.20732 3.33869 3.38668 3.40605 4.03666 4.47081 4.52601 4.79276 4.95001 5.03495 5.24056 5.37265 5.38404 5.54962 5.67504 5.77833 5.82064 5.86540 5.99343 6.03807 6.32430 6.43948 6.54552 6.62967 6.93926 7.07761 7.11498 7.17802 7.66934 7.75983 7.81998 7.88434 8.01003 8.30546 8.43900 9.05653 9.63313 11.12979 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.072422 B = 0.003711 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.528804 B = 7543.605751 C = 7756.037669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.377 5.377 4 C -0.050 4.050 5 C 0.078 3.922 6 N -0.742 5.742 7 C 0.139 3.861 8 C -0.095 4.095 9 H 0.060 0.940 10 C -0.130 4.130 11 C 0.030 3.970 12 C -0.516 4.516 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.009 3.991 21 N -0.279 5.279 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.165 0.835 28 H 0.394 0.606 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.030 0.970 33 H 0.061 0.939 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 -18.581 1.116 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 N -0.167 5.167 4 C -0.197 4.197 5 C -0.031 4.031 6 N -0.379 5.379 7 C 0.015 3.985 8 C -0.114 4.114 9 H 0.079 0.921 10 C -0.187 4.187 11 C -0.007 4.007 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.179 4.179 21 N -0.102 5.102 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.182 0.818 28 H 0.229 0.771 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.882 -18.918 0.085 20.899 hybrid contribution 1.513 0.914 1.423 2.269 sum -7.369 -18.004 1.507 19.512 Atomic orbital electron populations 1.22072 0.94306 1.02409 1.03560 1.21476 0.95542 0.77848 1.03121 1.48157 1.37262 1.09508 1.21802 1.21577 1.03436 0.94307 1.00353 1.17850 0.99093 0.89975 0.96184 1.44101 1.52026 1.09302 1.32453 1.21413 0.99187 0.80388 0.97477 1.21409 0.96565 0.98839 0.94581 0.92122 1.21700 1.00722 0.99047 0.97277 1.19075 0.97023 0.88672 0.95974 1.21176 1.22689 0.98871 1.12685 0.92640 1.25010 0.96536 0.97690 0.95222 1.69947 1.43134 1.14114 1.26309 0.86688 0.82077 0.78937 0.80466 1.20304 1.21344 1.20303 1.23579 0.98824 0.98021 0.97509 1.77093 1.22867 0.96570 1.13650 0.91185 0.91102 0.92159 0.90443 0.89139 0.81811 0.77147 0.93344 0.93404 0.93585 0.95068 0.92025 0.96478 0.96354 0.92967 0.80347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.10 37.16 0.38 -0.89 16 2 C 0.14 1.18 7.24 -4.04 -0.03 1.15 16 3 N -0.38 -4.75 3.71 -61.00 -0.23 -4.98 16 4 C -0.05 -0.64 11.52 -16.63 -0.19 -0.83 16 5 C 0.08 1.15 6.96 -83.90 -0.58 0.57 16 6 N -0.74 -11.15 5.53 -58.80 -0.33 -11.48 16 7 C 0.14 2.39 5.02 -4.04 -0.02 2.37 16 8 C -0.10 -1.87 2.37 -90.62 -0.22 -2.08 16 9 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 10 C -0.13 -2.38 8.88 37.16 0.33 -2.05 16 11 C 0.03 0.75 4.45 -27.89 -0.12 0.63 16 12 C -0.52 -14.21 8.41 -34.44 -0.29 -14.50 16 13 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.01 0.14 11.34 -17.22 -0.20 -0.06 16 21 N -0.28 -4.18 12.41 30.70 0.38 -3.80 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 27 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.39 5.45 7.78 -40.82 -0.32 5.13 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.48 7.18 -51.92 -0.37 0.11 16 33 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.18 2.48 7.90 -52.48 -0.41 2.07 16 LS Contribution 310.27 15.07 4.68 4.68 Total: -1.00 -31.13 310.27 -6.86 -37.99 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.04 Total: 1.28 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.04 Total: -14.19 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.57 Total: -46.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.13 -6.86 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602576998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.898 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds