Wall clock time and date at job start Sun Mar 29 2020 21:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47100 * 2 1 4 4 C 1.35966 * 126.07390 * 125.00389 * 3 2 1 5 5 C 1.35705 * 107.55489 * 179.97438 * 4 3 2 6 6 N 1.40796 * 126.06642 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99804 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47197 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46716 * 55.00281 * 8 7 6 10 10 C 1.53000 * 109.47171 * 295.00385 * 8 7 6 11 11 C 1.52992 * 109.47419 * 175.00317 * 8 7 6 12 12 C 1.50702 * 109.47440 * 185.00360 * 11 8 7 13 13 H 1.08001 * 119.99546 * 359.97438 * 12 11 8 14 14 C 1.37874 * 119.99952 * 180.02562 * 12 11 8 15 15 N 1.31515 * 120.00489 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99893 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46972 * 59.99801 * 16 14 12 18 18 H 1.48493 * 109.47564 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47012 * 300.00171 * 16 14 12 20 20 C 1.40215 * 107.86352 * 0.02562 * 5 4 3 21 21 N 1.30860 * 108.36639 * 359.97438 * 20 5 4 22 22 H 1.08994 * 109.47357 * 59.99742 * 1 2 3 23 23 H 1.09003 * 109.47018 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46776 * 299.99758 * 1 2 3 25 25 H 1.09002 * 109.46776 * 240.00242 * 2 1 3 26 26 H 1.08994 * 109.47357 * 120.00258 * 2 1 3 27 27 H 1.07998 * 126.22076 * 0.23821 * 4 3 2 28 28 H 0.97000 * 119.99963 * 0.02562 * 6 5 4 29 29 H 1.08997 * 109.47418 * 300.00405 * 7 6 5 30 30 H 1.09004 * 109.47111 * 60.01032 * 7 6 5 31 31 H 1.08992 * 109.47055 * 300.00051 * 10 8 7 32 32 H 1.09008 * 109.47047 * 59.99950 * 10 8 7 33 33 H 1.08998 * 109.47251 * 179.97438 * 10 8 7 34 34 H 1.09006 * 109.46880 * 304.99994 * 11 8 7 35 35 H 1.09002 * 109.47097 * 64.99735 * 11 8 7 36 36 H 0.96994 * 120.00542 * 180.02562 * 15 14 12 37 37 H 1.08003 * 125.81684 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8795 1.9259 0.9002 5 6 3.0758 3.2213 0.5468 6 7 3.8993 4.1472 1.2153 7 6 4.0147 5.5194 0.7152 8 6 4.9640 6.3123 1.6159 9 1 5.9197 5.7925 1.6833 10 6 4.3535 6.4405 3.0129 11 6 5.1823 7.7065 1.0249 12 6 6.2108 8.4437 1.8432 13 1 6.6632 7.9657 2.6996 14 6 6.5735 9.7287 1.4993 15 7 6.0222 10.3109 0.4569 16 14 7.8479 10.6427 2.5142 17 1 9.1284 9.8909 2.4943 18 1 8.0590 11.9963 1.9412 19 1 7.3689 10.7676 3.9143 20 6 2.3120 3.4743 -0.6015 21 7 1.6811 2.3752 -0.9275 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.3293 1.4185 1.7408 28 1 4.3908 3.8764 2.0064 29 1 4.4072 5.5038 -0.3015 30 1 3.0319 5.9910 0.7182 31 1 3.3978 6.9602 2.9455 32 1 4.1980 5.4472 3.4341 33 1 5.0300 7.0050 3.6547 34 1 5.5337 7.6144 -0.0029 35 1 4.2425 8.2585 1.0395 36 1 6.2776 11.2148 0.2147 37 1 2.2542 4.4159 -1.1274 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602576998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:51 Heat of formation + Delta-G solvation = 41.571179 kcal Electronic energy + Delta-G solvation = -16193.860407 eV Core-core repulsion = 13585.471951 eV Total energy + Delta-G solvation = -2608.388456 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.88483 -38.20973 -35.78582 -34.73612 -33.50844 -31.04174 -29.48986 -28.42943 -26.72424 -24.70367 -24.47435 -21.95788 -21.08682 -20.51639 -18.48995 -18.09405 -16.65363 -16.48041 -16.33063 -15.80602 -15.51311 -15.11248 -14.63429 -14.37259 -14.29293 -13.76094 -13.43641 -13.29196 -13.14310 -12.89189 -12.74726 -12.66029 -12.30192 -12.21725 -11.99912 -11.63353 -11.52961 -11.11516 -10.98753 -10.80063 -10.50776 -10.19681 -8.15235 -7.88353 -6.24422 1.01886 1.42246 1.44717 1.52299 1.72074 2.09275 2.43680 2.86652 3.18525 3.80251 4.07954 4.17111 4.19294 4.26730 4.29382 4.45186 4.47414 4.68202 4.80623 4.86384 4.88723 4.91845 5.01804 5.04069 5.25824 5.28454 5.37083 5.49925 5.52627 5.58214 5.82507 5.90300 6.26290 6.30028 6.57971 6.80327 6.91696 7.21719 7.43872 8.96735 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.072422 B = 0.003711 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.528804 B = 7543.605751 C = 7756.037669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 N -0.373 5.373 4 C -0.029 4.029 5 C 0.048 3.952 6 N -0.738 5.738 7 C 0.156 3.844 8 C -0.083 4.083 9 H 0.062 0.938 10 C -0.122 4.122 11 C 0.034 3.966 12 C -0.530 4.530 13 H 0.064 0.936 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.960 3.040 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.267 1.267 20 C -0.012 4.012 21 N -0.305 5.305 22 H 0.047 0.953 23 H 0.100 0.900 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.125 0.875 27 H 0.201 0.799 28 H 0.402 0.598 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.046 0.954 34 H -0.011 1.011 35 H -0.008 1.008 36 H 0.262 0.738 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 -20.801 2.921 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 N -0.162 5.162 4 C -0.177 4.177 5 C -0.060 4.060 6 N -0.377 5.377 7 C 0.031 3.969 8 C -0.102 4.102 9 H 0.081 0.919 10 C -0.179 4.179 11 C -0.004 4.004 12 C -0.568 4.568 13 H 0.082 0.918 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.785 3.215 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.199 4.199 21 N -0.130 5.130 22 H 0.066 0.934 23 H 0.118 0.882 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.143 0.857 27 H 0.218 0.782 28 H 0.238 0.762 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.007 0.993 35 H 0.011 0.989 36 H 0.070 0.930 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.464 -21.183 1.890 22.889 hybrid contribution 1.313 1.470 0.830 2.139 sum -7.151 -19.713 2.720 21.146 Atomic orbital electron populations 1.22030 0.93937 1.03852 1.01987 1.21944 0.95919 0.75866 1.05314 1.48654 1.36343 1.10435 1.20748 1.22140 1.01774 0.93525 1.00274 1.18020 1.00214 0.90950 0.96796 1.43760 1.52750 1.08258 1.32897 1.21003 0.97951 0.81628 0.96316 1.21176 0.97541 0.95863 0.95647 0.91929 1.21607 0.99681 1.00775 0.95886 1.18963 0.95118 0.91649 0.94658 1.21618 1.22901 0.99313 1.12941 0.91815 1.25946 0.98785 0.98858 0.96389 1.70093 1.44869 1.14520 1.28157 0.85569 0.79480 0.77408 0.79010 1.19243 1.21233 1.19175 1.23670 0.99611 0.98328 0.98254 1.77055 1.23725 0.97210 1.14977 0.93373 0.88155 0.93055 0.89439 0.85738 0.78249 0.76192 0.94552 0.94089 0.94288 0.91582 0.93477 0.99268 0.98936 0.92960 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 10.10 71.98 0.73 -1.37 16 2 C 0.13 1.74 7.24 86.38 0.63 2.37 16 3 N -0.37 -8.56 3.71 -346.91 -1.29 -9.85 16 4 C -0.03 -0.65 11.52 83.47 0.96 0.31 16 5 C 0.05 1.36 6.96 37.59 0.26 1.62 16 6 N -0.74 -21.21 5.53 -339.93 -1.88 -23.09 16 7 C 0.16 5.41 5.02 86.38 0.43 5.84 16 8 C -0.08 -3.28 2.37 -10.79 -0.03 -3.31 16 9 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 10 C -0.12 -4.33 8.88 71.98 0.64 -3.69 16 11 C 0.03 1.75 4.45 29.85 0.13 1.88 16 12 C -0.53 -29.49 8.41 25.60 0.22 -29.27 16 13 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 14 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 15 N -0.94 -57.18 13.29 21.45 0.28 -56.89 16 16 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 20 C -0.01 -0.36 11.34 85.32 0.97 0.61 16 21 N -0.31 -9.03 12.41 -56.78 -0.70 -9.73 16 22 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.12 0.87 8.07 -2.39 -0.02 0.85 16 27 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 28 H 0.40 10.12 7.78 -92.71 -0.72 9.39 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.87 7.18 -2.38 -0.02 1.86 16 33 H 0.05 1.79 6.95 -2.39 -0.02 1.77 16 34 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 35 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.18 5.15 7.90 -2.91 -0.02 5.13 16 Total: -1.00 -68.26 310.27 4.15 -64.11 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.31 Total: 13.98 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 5.40 Total: -24.69 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -3.59 Total: -99.56 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.26 4.15 -64.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602576998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.678 kcal (2) G-P(sol) polarization free energy of solvation -68.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds