Wall clock time and date at job start Sun Mar 29 2020 21:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47220 * 60.00221 * 9 7 5 11 11 H 1.48500 * 109.47168 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47296 * 300.00052 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 H 1.08997 * 109.47047 * 35.00300 * 15 14 13 17 17 C 1.52994 * 109.47308 * 274.99601 * 15 14 13 18 18 C 1.50702 * 109.46938 * 154.99999 * 15 14 13 19 19 C 1.39871 * 126.04154 * 40.02395 * 18 15 14 20 20 N 1.30845 * 108.20138 * 179.97438 * 19 18 15 21 21 N 1.40077 * 108.20609 * 0.02562 * 20 19 18 22 22 H 0.96998 * 126.03839 * 179.97438 * 21 20 19 23 23 C 1.34948 * 107.92605 * 359.75321 * 21 20 19 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 28 28 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 29 29 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 32 32 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 33 33 H 1.09009 * 109.46957 * 60.00163 * 17 15 14 34 34 H 1.08999 * 109.47608 * 179.97438 * 17 15 14 35 35 H 1.09007 * 109.47668 * 300.00441 * 17 15 14 36 36 H 1.07992 * 125.90088 * 359.95919 * 19 18 15 37 37 H 1.08001 * 126.12896 * 180.23486 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.0920 1.9237 -5.1865 11 1 1.9947 -0.1368 -6.4621 12 1 0.0199 0.6700 -5.3096 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 1 3.0894 -1.0975 3.4739 17 6 1.1140 -1.6918 4.0944 18 6 2.2763 0.3929 4.7668 19 6 1.4041 1.4542 5.0302 20 7 1.8666 2.1175 6.0589 21 7 3.0496 1.4987 6.4828 22 1 3.6057 1.7794 7.2263 23 6 3.2764 0.4402 5.6771 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 2.9246 -1.8413 -4.7316 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 1.9881 0.9873 2.3966 33 1 1.0050 -2.4291 3.2990 34 1 1.4661 -2.1847 5.0005 35 1 0.1501 -1.2208 4.2877 36 1 0.5046 1.6862 4.4795 37 1 4.1084 -0.2450 5.7450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602582293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:12 Heat of formation + Delta-G solvation = 31.527680 kcal Electronic energy + Delta-G solvation = -16458.474589 eV Core-core repulsion = 13849.650615 eV Total energy + Delta-G solvation = -2608.823975 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.09835 -38.51530 -36.22928 -34.26562 -32.24561 -31.52818 -29.45944 -28.64832 -26.67917 -24.70302 -22.99807 -22.71676 -20.98087 -20.47461 -18.55221 -18.43669 -16.58458 -16.33889 -15.88794 -15.66279 -15.39614 -15.13504 -14.81198 -14.34632 -13.92941 -13.61296 -13.36248 -13.13554 -13.02741 -12.74073 -12.65205 -12.47430 -12.28959 -12.13302 -11.90629 -11.50461 -11.30985 -11.03148 -10.86275 -10.54747 -10.49792 -9.43088 -9.21124 -8.14556 -6.23345 1.00876 1.41940 1.44641 1.52206 1.85615 2.11846 2.44505 3.18797 3.34233 3.86229 4.13655 4.23331 4.36097 4.46388 4.50919 4.61094 4.70096 4.78821 4.89645 4.98074 4.99919 5.09552 5.16933 5.20703 5.36606 5.49704 5.52707 5.57027 5.62712 5.71266 5.87021 5.93674 6.23082 6.37417 6.48778 6.61888 6.77392 6.92787 7.44711 8.97298 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045749 B = 0.004163 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.888177 B = 6724.161166 C = 6863.874211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.051 0.949 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.079 3.921 14 N -0.676 5.676 15 C 0.164 3.836 16 H 0.047 0.953 17 C -0.128 4.128 18 C -0.254 4.254 19 C 0.064 3.936 20 N -0.334 5.334 21 N -0.472 5.472 22 H 0.451 0.549 23 C 0.075 3.925 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.034 0.966 27 H -0.015 1.015 28 H -0.010 1.010 29 H 0.262 0.738 30 H 0.063 0.937 31 H 0.017 0.983 32 H 0.341 0.659 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.187 0.813 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 2.698 20.137 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.050 4.050 14 N -0.307 5.307 15 C 0.053 3.947 16 H 0.065 0.935 17 C -0.186 4.186 18 C -0.266 4.266 19 C -0.123 4.123 20 N -0.157 5.157 21 N -0.181 5.181 22 H 0.298 0.702 23 C -0.074 4.074 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.053 0.947 27 H 0.004 0.996 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.159 0.841 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.204 0.796 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 0.205 3.299 20.838 21.098 hybrid contribution 1.298 -0.225 -1.405 1.927 sum 1.503 3.074 19.432 19.731 Atomic orbital electron populations 1.21476 0.94698 1.00329 1.00435 1.21006 0.96706 0.98293 0.93274 0.93076 1.19014 0.94049 0.94705 0.92761 1.21635 1.34374 1.08570 0.92170 0.92186 1.25931 0.95287 0.96096 1.02574 1.70091 1.40300 1.22978 1.24276 0.85587 0.78937 0.78784 0.78272 1.19318 1.21028 1.19267 1.21868 0.96327 0.97451 0.89347 1.60564 1.63911 1.05577 1.00643 1.19684 0.96590 0.92018 0.86377 0.93523 1.21721 0.99168 0.97309 1.00415 1.20215 0.99485 1.02908 1.04017 1.23944 1.00281 0.93631 0.94401 1.77298 0.99077 1.22502 1.16842 1.46324 1.20691 1.22709 1.28372 0.70237 1.22873 1.00364 0.92266 0.91869 0.94648 0.91278 0.94682 0.99624 0.99133 0.92978 0.91851 0.96523 0.84115 0.93599 0.91605 0.92664 0.79587 0.77433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.28 8.89 71.98 0.64 -3.64 16 2 C -0.07 -3.02 2.48 -10.79 -0.03 -3.04 16 3 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -30.19 8.41 25.60 0.22 -29.97 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 9 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.08 2.67 4.87 86.30 0.42 3.09 16 14 N -0.68 -18.22 5.56 -495.47 -2.76 -20.98 16 15 C 0.16 3.66 3.05 44.17 0.13 3.79 16 16 H 0.05 1.04 7.79 -2.39 -0.02 1.02 16 17 C -0.13 -2.74 9.40 71.98 0.68 -2.07 16 18 C -0.25 -5.15 4.81 -20.14 -0.10 -5.24 16 19 C 0.06 1.43 11.46 85.24 0.98 2.40 16 20 N -0.33 -7.68 12.70 -57.02 -0.72 -8.40 16 21 N -0.47 -7.48 7.36 -57.59 -0.42 -7.90 16 22 H 0.45 4.05 8.96 -213.34 -1.91 2.14 16 23 C 0.08 1.14 11.90 83.54 0.99 2.13 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 2.27 7.75 -2.39 -0.02 2.25 16 26 H 0.03 1.43 6.95 -2.39 -0.02 1.42 16 27 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 28 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 29 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.06 2.18 7.44 -2.39 -0.02 2.17 16 31 H 0.02 0.58 8.06 -2.38 -0.02 0.56 16 32 H 0.34 9.13 8.15 -89.69 -0.73 8.39 16 33 H 0.04 1.07 7.46 -2.38 -0.02 1.05 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.19 3.94 8.06 -2.91 -0.02 3.92 16 37 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -67.91 307.82 1.35 -66.56 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -1.59 Total: 11.50 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 4.53 Total: -30.35 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -3.62 Total: -94.53 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.91 1.35 -66.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602582293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.089 kcal (2) G-P(sol) polarization free energy of solvation -67.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds