Wall clock time and date at job start Sun Mar 29 2020 21:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47573 * 2 1 4 4 C 1.53004 * 109.47248 * 120.00425 * 2 1 3 5 5 C 1.50696 * 109.46753 * 294.99774 * 4 2 1 6 6 H 1.08000 * 120.00390 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99966 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99785 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00093 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47218 * 90.00296 * 9 7 5 11 11 H 1.48500 * 109.46999 * 210.00428 * 9 7 5 12 12 H 1.48504 * 109.47158 * 330.00431 * 9 7 5 13 13 C 1.53004 * 109.46964 * 240.00050 * 2 1 3 14 14 N 1.46901 * 109.47069 * 65.00463 * 13 2 1 15 15 C 1.46897 * 110.99799 * 180.02562 * 14 13 2 16 16 H 1.08999 * 109.47613 * 324.99376 * 15 14 13 17 17 C 1.53000 * 109.47487 * 84.99714 * 15 14 13 18 18 C 1.50706 * 109.47024 * 204.99620 * 15 14 13 19 19 C 1.39870 * 126.03571 * 320.02311 * 18 15 14 20 20 N 1.30836 * 108.20019 * 179.71573 * 19 18 15 21 21 N 1.40090 * 108.20534 * 0.24683 * 20 19 18 22 22 H 0.97004 * 126.03573 * 180.02562 * 21 20 19 23 23 C 1.34942 * 107.92509 * 359.97438 * 21 20 19 24 24 H 1.09004 * 109.46898 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46857 * 299.99981 * 1 2 3 26 26 H 1.08999 * 109.46932 * 59.99736 * 1 2 3 27 27 H 1.09000 * 109.46873 * 54.99929 * 4 2 1 28 28 H 1.08994 * 109.47221 * 174.99854 * 4 2 1 29 29 H 0.96997 * 119.99664 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47493 * 304.99833 * 13 2 1 31 31 H 1.09001 * 109.46979 * 184.99927 * 13 2 1 32 32 H 1.00903 * 110.99335 * 303.94659 * 14 13 2 33 33 H 1.09008 * 109.47173 * 59.99828 * 17 15 14 34 34 H 1.08997 * 109.47080 * 179.97438 * 17 15 14 35 35 H 1.09000 * 109.46911 * 299.99892 * 17 15 14 36 36 H 1.08002 * 125.90382 * 359.97438 * 19 18 15 37 37 H 1.08002 * 126.12737 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9740 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6756 -1.5195 3.8511 9 14 1.4976 0.5619 5.2497 10 1 0.1703 0.0935 5.7227 11 1 2.5066 0.3517 6.3188 12 1 1.4227 2.0073 4.9170 13 6 2.0399 -0.7213 -1.2493 14 7 1.6514 0.0375 -2.4457 15 6 2.1247 -0.6271 -3.6672 16 1 3.0882 -1.0987 -3.4743 17 6 1.1121 -1.6917 -4.0938 18 6 2.2756 0.3920 -4.7672 19 6 1.4046 1.4544 -5.0298 20 7 1.8704 2.1209 -6.0548 21 7 3.0513 1.4993 -6.4810 22 1 3.6090 1.7815 -7.2229 23 6 3.2765 0.4396 -5.6766 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6054 -1.7199 1.2950 28 1 3.1263 -0.7996 1.2055 29 1 2.9228 -1.8424 4.7317 30 1 1.6053 -1.7199 -1.2952 31 1 3.1263 -0.7995 -1.2056 32 1 0.6528 0.1793 -2.4753 33 1 0.1485 -1.2200 -4.2868 34 1 1.4631 -2.1845 -5.0004 35 1 1.0029 -2.4288 -3.2982 36 1 0.5053 1.6871 -4.4789 37 1 4.1087 -0.2455 -5.7439 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602582294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:15 Heat of formation + Delta-G solvation = 53.106157 kcal Electronic energy + Delta-G solvation = -16460.736954 eV Core-core repulsion = 13852.848692 eV Total energy + Delta-G solvation = -2607.888262 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.18523 -37.36289 -34.72690 -32.33504 -31.32678 -30.24477 -28.40079 -26.75530 -25.26848 -23.08299 -22.16917 -21.68553 -19.92841 -18.92840 -17.62944 -16.38671 -15.22901 -14.85677 -14.48990 -14.46644 -14.19222 -14.14278 -13.31092 -12.88475 -12.71934 -12.49253 -12.24826 -11.72506 -11.61992 -11.43637 -11.31864 -10.82956 -10.73403 -10.51885 -10.28115 -10.14833 -9.67151 -9.64758 -9.11814 -8.93177 -8.50952 -8.29505 -8.00323 -5.94446 -3.95203 1.87076 2.81202 2.87640 3.35465 3.41799 3.45579 4.44576 4.54026 4.84481 4.89109 5.24620 5.29392 5.39373 5.41520 5.61927 5.65402 5.76729 5.87759 6.01432 6.04455 6.11156 6.23319 6.35145 6.52959 6.62079 6.63769 7.02188 7.16289 7.20835 7.23168 7.46057 7.65406 7.73313 7.76159 7.91140 8.06439 8.50605 9.11350 9.68063 11.17127 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045603 B = 0.004162 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.850574 B = 6725.340334 C = 6861.564420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.681 5.681 15 C 0.157 3.843 16 H 0.080 0.920 17 C -0.176 4.176 18 C -0.209 4.209 19 C 0.072 3.928 20 N -0.304 5.304 21 N -0.483 5.483 22 H 0.436 0.564 23 C 0.052 3.948 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.032 0.968 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.024 0.976 31 H 0.066 0.934 32 H 0.338 0.662 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.180 0.820 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 0.935 -18.999 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.063 4.063 14 N -0.312 5.312 15 C 0.045 3.955 16 H 0.098 0.902 17 C -0.235 4.235 18 C -0.221 4.221 19 C -0.115 4.115 20 N -0.127 5.127 21 N -0.192 5.192 22 H 0.279 0.721 23 C -0.095 4.095 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.157 0.843 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.197 0.803 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.028 2.235 -19.583 19.710 hybrid contribution -0.345 -0.923 1.085 1.466 sum -0.373 1.312 -18.498 18.548 Atomic orbital electron populations 1.21737 0.96729 1.00381 1.00247 1.21219 0.94829 1.00114 0.94174 0.91675 1.19109 0.96109 0.95343 0.90412 1.21255 1.34488 1.08255 0.91011 0.92570 1.25019 0.95359 0.95102 0.99077 1.69967 1.39166 1.21306 1.23312 0.86639 0.78166 0.80498 0.82978 1.20784 1.21340 1.19878 1.22154 1.00162 0.94520 0.89467 1.60607 1.19562 1.50144 1.00925 1.19707 0.98300 0.89859 0.87586 0.90212 1.22481 0.99927 0.99535 1.01526 1.20070 0.98073 1.02367 1.01606 1.23681 1.00052 0.93455 0.94312 1.77307 0.97807 1.21135 1.16436 1.46227 1.21545 1.22988 1.28399 0.72095 1.22291 1.00544 0.92991 0.93686 0.94059 0.91974 0.94915 0.96780 0.96702 0.93147 0.95769 0.91584 0.84310 0.92551 0.92526 0.92356 0.80318 0.81017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.77 37.16 0.33 -2.14 16 2 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 3 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.37 8.41 -34.44 -0.29 -14.65 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.07 1.11 4.94 -3.82 -0.02 1.09 16 14 N -0.68 -9.70 5.99 -107.95 -0.65 -10.35 16 15 C 0.16 1.88 3.02 -68.86 -0.21 1.67 16 16 H 0.08 0.96 7.79 -51.93 -0.40 0.55 16 17 C -0.18 -1.86 9.14 37.16 0.34 -1.52 16 18 C -0.21 -2.44 5.09 -105.05 -0.54 -2.98 16 19 C 0.07 0.89 11.66 -17.37 -0.20 0.69 16 20 N -0.30 -3.91 12.70 30.62 0.39 -3.52 16 21 N -0.48 -4.72 7.36 30.44 0.22 -4.50 16 22 H 0.44 2.76 8.96 -182.60 -1.64 1.12 16 23 C 0.05 0.51 11.90 -17.23 -0.20 0.30 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 26 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.02 0.40 7.44 -51.93 -0.39 0.02 16 31 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 32 H 0.34 4.54 6.72 -39.29 -0.26 4.28 16 33 H 0.06 0.58 8.13 -51.92 -0.42 0.16 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 36 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 305.95 15.07 4.61 4.61 Total: -1.00 -31.93 305.95 -8.04 -39.97 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.09 Total: 0.75 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -1.24 Total: -17.42 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.70 Total: -44.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.93 -8.04 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602582294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.078 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds