Wall clock time and date at job start Sun Mar 29 2020 21:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47573 * 2 1 4 4 C 1.53004 * 109.47248 * 120.00425 * 2 1 3 5 5 C 1.50696 * 109.46753 * 294.99774 * 4 2 1 6 6 H 1.08000 * 120.00390 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99966 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99785 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00093 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47218 * 90.00296 * 9 7 5 11 11 H 1.48500 * 109.46999 * 210.00428 * 9 7 5 12 12 H 1.48504 * 109.47158 * 330.00431 * 9 7 5 13 13 C 1.53004 * 109.46964 * 240.00050 * 2 1 3 14 14 N 1.46901 * 109.47069 * 65.00463 * 13 2 1 15 15 C 1.46897 * 110.99799 * 180.02562 * 14 13 2 16 16 H 1.08999 * 109.47613 * 324.99376 * 15 14 13 17 17 C 1.53000 * 109.47487 * 84.99714 * 15 14 13 18 18 C 1.50706 * 109.47024 * 204.99620 * 15 14 13 19 19 C 1.39870 * 126.03571 * 320.02311 * 18 15 14 20 20 N 1.30836 * 108.20019 * 179.71573 * 19 18 15 21 21 N 1.40090 * 108.20534 * 0.24683 * 20 19 18 22 22 H 0.97004 * 126.03573 * 180.02562 * 21 20 19 23 23 C 1.34942 * 107.92509 * 359.97438 * 21 20 19 24 24 H 1.09004 * 109.46898 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46857 * 299.99981 * 1 2 3 26 26 H 1.08999 * 109.46932 * 59.99736 * 1 2 3 27 27 H 1.09000 * 109.46873 * 54.99929 * 4 2 1 28 28 H 1.08994 * 109.47221 * 174.99854 * 4 2 1 29 29 H 0.96997 * 119.99664 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47493 * 304.99833 * 13 2 1 31 31 H 1.09001 * 109.46979 * 184.99927 * 13 2 1 32 32 H 1.00903 * 110.99335 * 303.94659 * 14 13 2 33 33 H 1.09008 * 109.47173 * 59.99828 * 17 15 14 34 34 H 1.08997 * 109.47080 * 179.97438 * 17 15 14 35 35 H 1.09000 * 109.46911 * 299.99892 * 17 15 14 36 36 H 1.08002 * 125.90382 * 359.97438 * 19 18 15 37 37 H 1.08002 * 126.12737 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4765 6 1 1.0800 0.9740 2.3757 7 6 1.9924 -0.4024 3.7283 8 7 2.6756 -1.5195 3.8511 9 14 1.4976 0.5619 5.2497 10 1 0.1703 0.0935 5.7227 11 1 2.5066 0.3517 6.3188 12 1 1.4227 2.0073 4.9170 13 6 2.0399 -0.7213 -1.2493 14 7 1.6514 0.0375 -2.4457 15 6 2.1247 -0.6271 -3.6672 16 1 3.0882 -1.0987 -3.4743 17 6 1.1121 -1.6917 -4.0938 18 6 2.2756 0.3920 -4.7672 19 6 1.4046 1.4544 -5.0298 20 7 1.8704 2.1209 -6.0548 21 7 3.0513 1.4993 -6.4810 22 1 3.6090 1.7815 -7.2229 23 6 3.2765 0.4396 -5.6766 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6054 -1.7199 1.2950 28 1 3.1263 -0.7996 1.2055 29 1 2.9228 -1.8424 4.7317 30 1 1.6053 -1.7199 -1.2952 31 1 3.1263 -0.7995 -1.2056 32 1 0.6528 0.1793 -2.4753 33 1 0.1485 -1.2200 -4.2868 34 1 1.4631 -2.1845 -5.0004 35 1 1.0029 -2.4288 -3.2982 36 1 0.5053 1.6871 -4.4789 37 1 4.1087 -0.2455 -5.7439 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602582294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:15 Heat of formation + Delta-G solvation = 31.424086 kcal Electronic energy + Delta-G solvation = -16461.677159 eV Core-core repulsion = 13852.848692 eV Total energy + Delta-G solvation = -2608.828467 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.01221 -38.65672 -36.25754 -34.27605 -32.19814 -31.46894 -29.38763 -28.58182 -26.75921 -24.62971 -23.25175 -22.76059 -20.90237 -20.43791 -18.56518 -18.41998 -16.62551 -16.44866 -15.73667 -15.53526 -15.30667 -15.12257 -14.64367 -14.39954 -14.07347 -13.70279 -13.49462 -13.22851 -13.15657 -12.75280 -12.59786 -12.55545 -12.34642 -12.15900 -11.84711 -11.43561 -11.39423 -11.01217 -10.87694 -10.50144 -10.48626 -9.40042 -9.11044 -8.14676 -6.23229 1.07514 1.41937 1.42793 1.53872 1.93769 2.17566 2.44479 3.18825 3.40073 3.94929 4.17714 4.28419 4.30288 4.45503 4.45957 4.53660 4.56961 4.80861 4.82193 4.85589 4.95756 5.10476 5.15405 5.20901 5.32848 5.36084 5.46740 5.54523 5.61463 5.77580 5.86775 5.94585 6.24362 6.37846 6.54970 6.65653 6.82599 6.93125 7.44822 8.97351 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045603 B = 0.004162 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.850574 B = 6725.340334 C = 6861.564420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.080 3.920 14 N -0.683 5.683 15 C 0.161 3.839 16 H 0.080 0.920 17 C -0.169 4.169 18 C -0.233 4.233 19 C 0.060 3.940 20 N -0.338 5.338 21 N -0.474 5.474 22 H 0.450 0.550 23 C 0.067 3.933 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.067 0.933 27 H -0.009 1.009 28 H -0.014 1.014 29 H 0.261 0.739 30 H 0.027 0.973 31 H 0.056 0.944 32 H 0.343 0.657 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.184 0.816 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 1.441 -20.025 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.189 1.189 13 C -0.049 4.049 14 N -0.315 5.315 15 C 0.050 3.950 16 H 0.098 0.902 17 C -0.228 4.228 18 C -0.245 4.245 19 C -0.126 4.126 20 N -0.161 5.161 21 N -0.184 5.184 22 H 0.296 0.704 23 C -0.081 4.081 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.009 0.991 28 H 0.004 0.996 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.201 0.799 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.320 2.761 -20.643 20.829 hybrid contribution -0.199 -1.094 1.330 1.733 sum -0.518 1.667 -19.313 19.392 Atomic orbital electron populations 1.21645 0.95014 1.00674 1.01011 1.21016 0.96197 0.98865 0.93419 0.92889 1.19005 0.94193 0.94603 0.92683 1.21663 1.34286 1.08523 0.92170 0.92229 1.25928 0.95308 0.96101 1.02564 1.70099 1.40363 1.22971 1.24199 0.85533 0.78008 0.79287 0.78753 1.19846 1.20971 1.18909 1.21822 0.99371 0.94392 0.89292 1.60525 1.20060 1.50062 1.00831 1.19687 0.98531 0.90214 0.86553 0.90230 1.22404 0.99704 0.98905 1.01786 1.20104 0.99128 1.02726 1.02502 1.23869 1.00535 0.93767 0.94417 1.77249 0.99319 1.22332 1.17191 1.46277 1.20857 1.22629 1.28614 0.70382 1.22819 1.00448 0.92602 0.92258 0.93978 0.93890 0.91414 0.99068 0.99553 0.92990 0.95527 0.92588 0.83680 0.92283 0.91139 0.93166 0.79871 0.77532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.77 71.98 0.63 -3.90 16 2 C -0.08 -3.09 2.55 -10.79 -0.03 -3.12 16 3 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.03 1.72 4.45 29.85 0.13 1.86 16 5 C -0.53 -30.08 8.41 25.60 0.22 -29.87 16 6 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 8 N -0.94 -57.40 13.29 21.45 0.28 -57.11 16 9 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 13 C 0.08 2.69 4.94 86.30 0.43 3.11 16 14 N -0.68 -18.51 5.99 -495.43 -2.97 -21.48 16 15 C 0.16 3.56 3.02 44.17 0.13 3.69 16 16 H 0.08 1.76 7.79 -2.39 -0.02 1.74 16 17 C -0.17 -3.24 9.14 71.98 0.66 -2.58 16 18 C -0.23 -4.96 5.09 -20.14 -0.10 -5.06 16 19 C 0.06 1.41 11.66 85.24 0.99 2.40 16 20 N -0.34 -8.21 12.70 -57.02 -0.72 -8.93 16 21 N -0.47 -8.21 7.36 -57.59 -0.42 -8.63 16 22 H 0.45 4.66 8.96 -213.32 -1.91 2.74 16 23 C 0.07 1.11 11.90 83.54 0.99 2.10 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.69 6.95 -2.39 -0.02 1.68 16 26 H 0.07 1.95 6.68 -2.39 -0.02 1.93 16 27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.03 0.87 7.44 -2.38 -0.02 0.86 16 31 H 0.06 1.98 8.06 -2.39 -0.02 1.96 16 32 H 0.34 8.59 6.72 -89.69 -0.60 7.98 16 33 H 0.06 1.10 8.13 -2.38 -0.02 1.08 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.04 7.45 -2.39 -0.02 1.02 16 36 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 37 H 0.21 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -69.01 305.95 1.26 -67.75 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -1.45 Total: 12.60 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 4.52 Total: -31.02 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -3.83 Total: -96.15 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.01 1.26 -67.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602582294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.175 kcal (2) G-P(sol) polarization free energy of solvation -69.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds