Wall clock time and date at job start Sun Mar 29 2020 22:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29827 * 118.54985 * 2 1 4 4 C 1.50696 * 118.35635 * 0.39283 * 3 2 1 5 5 C 1.50141 * 123.28180 * 180.11526 * 3 2 1 6 6 N 1.46846 * 110.27617 * 343.20230 * 5 3 2 7 7 C 1.46893 * 111.00046 * 287.54181 * 6 5 3 8 8 C 1.52997 * 109.47080 * 293.63276 * 7 6 5 9 9 H 1.08997 * 109.47347 * 58.14157 * 8 7 6 10 10 C 1.53003 * 109.47445 * 298.13799 * 8 7 6 11 11 C 1.53005 * 109.47038 * 178.14109 * 8 7 6 12 12 C 1.50702 * 109.47126 * 185.00192 * 11 8 7 13 13 H 1.08003 * 120.00015 * 359.97438 * 12 11 8 14 14 C 1.37874 * 120.00062 * 179.97438 * 12 11 8 15 15 N 1.31513 * 120.00200 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00083 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47105 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47597 * 120.00038 * 16 14 12 19 19 H 1.48506 * 109.46917 * 240.00277 * 16 14 12 20 20 C 1.47247 * 110.20176 * 50.92792 * 6 5 3 21 21 C 1.50299 * 118.55389 * 180.23036 * 2 1 3 22 22 H 1.09000 * 109.47684 * 5.21566 * 1 2 3 23 23 H 1.09006 * 109.47064 * 125.21548 * 1 2 3 24 24 H 1.09001 * 109.47219 * 245.21178 * 1 2 3 25 25 H 1.09006 * 109.47113 * 175.37988 * 4 3 2 26 26 H 1.09003 * 109.47626 * 295.37484 * 4 3 2 27 27 H 1.08993 * 109.47581 * 55.38064 * 4 3 2 28 28 H 1.08996 * 109.34041 * 103.45407 * 5 3 2 29 29 H 1.09002 * 109.33678 * 222.96046 * 5 3 2 30 30 H 1.08999 * 109.47365 * 53.63897 * 7 6 5 31 31 H 1.08999 * 109.46990 * 173.63519 * 7 6 5 32 32 H 1.09000 * 109.46527 * 64.70879 * 10 8 7 33 33 H 1.08998 * 109.47198 * 184.70756 * 10 8 7 34 34 H 1.09001 * 109.47086 * 304.71204 * 10 8 7 35 35 H 1.08999 * 109.46851 * 304.99960 * 11 8 7 36 36 H 1.08997 * 109.47257 * 64.99922 * 11 8 7 37 37 H 0.97001 * 120.00645 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.63553 * 50.89418 * 20 6 5 39 39 H 1.09003 * 109.63177 * 171.49647 * 20 6 5 40 40 H 1.09002 * 109.55860 * 43.51740 * 21 2 1 41 41 H 1.08997 * 109.25456 * 283.69484 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1275 1.1404 0.0000 4 6 1.3047 2.4029 0.0091 5 6 3.6238 1.2643 -0.0025 6 7 4.2404 -0.0083 0.3932 7 6 4.0575 -0.2578 1.8292 8 6 4.8407 0.7832 2.6315 9 1 4.4982 1.7823 2.3623 10 6 6.3323 0.6533 2.3168 11 6 4.6129 0.5517 4.1267 12 6 5.2833 1.6489 4.9128 13 1 5.8187 2.4327 4.3975 14 6 5.2133 1.6521 6.2897 15 7 4.5618 0.6975 6.9173 16 14 6.0436 3.0125 7.2640 17 1 6.7057 3.9576 6.3292 18 1 5.0265 3.7393 8.0654 19 1 7.0596 2.4218 8.1719 20 6 3.6874 -1.1124 -0.4088 21 6 2.2254 -1.3202 -0.0053 22 1 -0.3634 1.0234 -0.0934 23 1 -0.3633 -0.5926 -0.8396 24 1 -0.3634 -0.4309 0.9330 25 1 1.9650 3.2663 0.0907 26 1 0.7317 2.4699 -0.9158 27 1 0.6223 2.3858 0.8588 28 1 3.9620 1.5335 -1.0031 29 1 3.9226 2.0435 0.6986 30 1 2.9987 -0.1874 2.0783 31 1 4.4227 -1.2552 2.0741 32 1 6.5054 0.9000 1.2693 33 1 6.8981 1.3372 2.9495 34 1 6.6561 -0.3700 2.5073 35 1 3.5433 0.5561 4.3363 36 1 5.0354 -0.4112 4.4138 37 1 4.5128 0.6995 7.8860 38 1 3.7429 -0.8596 -1.4676 39 1 4.2536 -2.0239 -0.2168 40 1 1.7456 -1.9939 -0.7153 41 1 2.1832 -1.7563 0.9927 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602641779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:11 Heat of formation + Delta-G solvation = -5.270680 kcal Electronic energy + Delta-G solvation = -17627.602108 eV Core-core repulsion = 15120.722780 eV Total energy + Delta-G solvation = -2506.879328 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.82398 -35.80732 -33.90210 -32.15068 -31.49092 -28.07760 -26.93927 -26.57164 -25.63705 -23.38944 -22.78320 -20.88128 -18.93816 -16.71292 -16.01854 -15.49909 -15.23742 -14.85925 -14.59896 -14.25858 -13.72864 -13.54610 -12.76141 -12.64497 -12.47293 -12.23394 -12.08073 -11.85725 -11.68500 -11.47444 -11.40084 -11.16556 -11.04558 -10.79920 -10.66668 -10.50813 -10.22202 -10.09246 -9.53869 -9.07797 -8.89170 -8.38273 -8.28931 -7.90368 -5.94138 -3.94837 2.26004 3.34103 3.41598 3.45834 4.28719 4.51692 4.82363 4.99135 5.11352 5.26109 5.41223 5.41881 5.50631 5.57181 5.60281 5.64059 5.75389 5.83744 5.84793 5.97412 5.99752 6.03903 6.07820 6.11506 6.18045 6.27162 6.47366 6.63906 6.70549 6.77253 7.07654 7.09797 7.23745 7.29386 7.44383 7.52640 7.75150 7.91539 8.06830 8.51272 9.11891 9.68304 11.17524 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.029623 B = 0.005874 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.997984 B = 4765.346115 C = 4991.838665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.136 4.136 3 C -0.154 4.154 4 C -0.115 4.115 5 C 0.085 3.915 6 N -0.524 5.524 7 C 0.057 3.943 8 C -0.080 4.080 9 H 0.054 0.946 10 C -0.122 4.122 11 C 0.028 3.972 12 C -0.509 4.509 13 H 0.056 0.944 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.053 3.947 21 C -0.117 4.117 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.015 0.985 37 H 0.258 0.742 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 -1.500 -15.443 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.136 4.136 3 C -0.155 4.155 4 C -0.172 4.172 5 C -0.043 4.043 6 N -0.245 5.245 7 C -0.070 4.070 8 C -0.099 4.099 9 H 0.072 0.928 10 C -0.180 4.180 11 C -0.010 4.010 12 C -0.548 4.548 13 H 0.075 0.925 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.076 4.076 21 C -0.156 4.156 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.213 -1.533 -15.360 16.293 hybrid contribution -0.622 0.563 0.914 1.240 sum -5.835 -0.971 -14.446 15.610 Atomic orbital electron populations 1.20985 0.92847 1.02547 1.01558 1.20685 0.95483 0.94386 1.03051 1.21598 0.97432 0.94865 1.01618 1.20857 0.99327 0.95642 1.01348 1.21122 0.88021 0.93690 1.01479 1.62789 1.54745 1.01573 1.05394 1.22343 0.98785 1.00244 0.85666 1.21216 0.94805 0.96512 0.97348 0.92762 1.21583 0.96394 1.00678 0.99306 1.19110 0.96618 0.97051 0.88211 1.21279 1.32762 1.09600 0.91131 0.92543 1.25020 0.95639 0.95911 0.98027 1.69978 1.42628 1.32891 1.08261 0.86591 0.79302 0.82289 0.80159 1.19744 1.21155 1.21101 1.22238 0.92165 0.95314 0.97873 1.20992 0.97073 0.95200 1.02302 0.91453 0.92334 0.91930 0.92099 0.92093 0.91692 0.90422 0.89101 0.94660 0.91619 0.94062 0.92712 0.94324 0.97041 0.96676 0.93212 0.91160 0.90590 0.91264 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.70 36.01 0.35 -1.03 16 2 C -0.14 -1.80 5.23 -100.93 -0.53 -2.32 16 3 C -0.15 -2.10 5.36 -101.01 -0.54 -2.64 16 4 C -0.11 -1.36 8.39 36.00 0.30 -1.05 16 5 C 0.08 1.23 5.43 -5.28 -0.03 1.20 16 6 N -0.52 -8.10 4.43 -236.11 -1.05 -9.15 16 7 C 0.06 1.03 3.47 -3.83 -0.01 1.02 16 8 C -0.08 -1.68 2.24 -90.62 -0.20 -1.89 16 9 H 0.05 1.16 6.26 -51.93 -0.33 0.84 16 10 C -0.12 -2.44 8.87 37.16 0.33 -2.11 16 11 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 12 C -0.51 -14.47 8.34 -34.44 -0.29 -14.75 16 13 H 0.06 1.57 7.08 -52.48 -0.37 1.20 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.05 0.68 6.03 -3.59 -0.02 0.66 16 21 C -0.12 -1.48 5.27 -28.03 -0.15 -1.63 16 22 H 0.07 0.71 5.37 -51.93 -0.28 0.43 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 26 H 0.06 0.62 7.71 -51.93 -0.40 0.22 16 27 H 0.06 0.79 7.43 -51.93 -0.39 0.40 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.44 6.00 -51.93 -0.31 1.12 16 30 H 0.04 0.67 6.01 -51.93 -0.31 0.36 16 31 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 32 H 0.04 0.74 7.80 -51.93 -0.41 0.34 16 33 H 0.05 1.17 6.83 -51.93 -0.35 0.81 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.03 7.14 -51.93 -0.37 0.66 16 LS Contribution 311.99 15.07 4.70 4.70 Total: -1.00 -29.97 311.99 -8.93 -38.90 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.28 Total: -2.27 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -1.01 Total: -22.48 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.31 Total: -35.76 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.97 -8.93 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.629 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds