Wall clock time and date at job start Sun Mar 29 2020 22:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29827 * 118.54985 * 2 1 4 4 C 1.50696 * 118.35635 * 0.39283 * 3 2 1 5 5 C 1.50141 * 123.28180 * 180.11526 * 3 2 1 6 6 N 1.46846 * 110.27617 * 343.20230 * 5 3 2 7 7 C 1.46893 * 111.00046 * 287.54181 * 6 5 3 8 8 C 1.52997 * 109.47080 * 293.63276 * 7 6 5 9 9 H 1.08997 * 109.47347 * 58.14157 * 8 7 6 10 10 C 1.53003 * 109.47445 * 298.13799 * 8 7 6 11 11 C 1.53005 * 109.47038 * 178.14109 * 8 7 6 12 12 C 1.50702 * 109.47126 * 185.00192 * 11 8 7 13 13 H 1.08003 * 120.00015 * 359.97438 * 12 11 8 14 14 C 1.37874 * 120.00062 * 179.97438 * 12 11 8 15 15 N 1.31513 * 120.00200 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00083 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47105 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47597 * 120.00038 * 16 14 12 19 19 H 1.48506 * 109.46917 * 240.00277 * 16 14 12 20 20 C 1.47247 * 110.20176 * 50.92792 * 6 5 3 21 21 C 1.50299 * 118.55389 * 180.23036 * 2 1 3 22 22 H 1.09000 * 109.47684 * 5.21566 * 1 2 3 23 23 H 1.09006 * 109.47064 * 125.21548 * 1 2 3 24 24 H 1.09001 * 109.47219 * 245.21178 * 1 2 3 25 25 H 1.09006 * 109.47113 * 175.37988 * 4 3 2 26 26 H 1.09003 * 109.47626 * 295.37484 * 4 3 2 27 27 H 1.08993 * 109.47581 * 55.38064 * 4 3 2 28 28 H 1.08996 * 109.34041 * 103.45407 * 5 3 2 29 29 H 1.09002 * 109.33678 * 222.96046 * 5 3 2 30 30 H 1.08999 * 109.47365 * 53.63897 * 7 6 5 31 31 H 1.08999 * 109.46990 * 173.63519 * 7 6 5 32 32 H 1.09000 * 109.46527 * 64.70879 * 10 8 7 33 33 H 1.08998 * 109.47198 * 184.70756 * 10 8 7 34 34 H 1.09001 * 109.47086 * 304.71204 * 10 8 7 35 35 H 1.08999 * 109.46851 * 304.99960 * 11 8 7 36 36 H 1.08997 * 109.47257 * 64.99922 * 11 8 7 37 37 H 0.97001 * 120.00645 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.63553 * 50.89418 * 20 6 5 39 39 H 1.09003 * 109.63177 * 171.49647 * 20 6 5 40 40 H 1.09002 * 109.55860 * 43.51740 * 21 2 1 41 41 H 1.08997 * 109.25456 * 283.69484 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1275 1.1404 0.0000 4 6 1.3047 2.4029 0.0091 5 6 3.6238 1.2643 -0.0025 6 7 4.2404 -0.0083 0.3932 7 6 4.0575 -0.2578 1.8292 8 6 4.8407 0.7832 2.6315 9 1 4.4982 1.7823 2.3623 10 6 6.3323 0.6533 2.3168 11 6 4.6129 0.5517 4.1267 12 6 5.2833 1.6489 4.9128 13 1 5.8187 2.4327 4.3975 14 6 5.2133 1.6521 6.2897 15 7 4.5618 0.6975 6.9173 16 14 6.0436 3.0125 7.2640 17 1 6.7057 3.9576 6.3292 18 1 5.0265 3.7393 8.0654 19 1 7.0596 2.4218 8.1719 20 6 3.6874 -1.1124 -0.4088 21 6 2.2254 -1.3202 -0.0053 22 1 -0.3634 1.0234 -0.0934 23 1 -0.3633 -0.5926 -0.8396 24 1 -0.3634 -0.4309 0.9330 25 1 1.9650 3.2663 0.0907 26 1 0.7317 2.4699 -0.9158 27 1 0.6223 2.3858 0.8588 28 1 3.9620 1.5335 -1.0031 29 1 3.9226 2.0435 0.6986 30 1 2.9987 -0.1874 2.0783 31 1 4.4227 -1.2552 2.0741 32 1 6.5054 0.9000 1.2693 33 1 6.8981 1.3372 2.9495 34 1 6.6561 -0.3700 2.5073 35 1 3.5433 0.5561 4.3363 36 1 5.0354 -0.4112 4.4138 37 1 4.5128 0.6995 7.8860 38 1 3.7429 -0.8596 -1.4676 39 1 4.2536 -2.0239 -0.2168 40 1 1.7456 -1.9939 -0.7153 41 1 2.1832 -1.7563 0.9927 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602641779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:11 Heat of formation + Delta-G solvation = -22.063133 kcal Electronic energy + Delta-G solvation = -17628.330284 eV Core-core repulsion = 15120.722780 eV Total energy + Delta-G solvation = -2507.607503 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97495 -37.34063 -35.41298 -33.99911 -32.67110 -29.49432 -28.45054 -27.91421 -26.98101 -25.09526 -24.05765 -22.19060 -20.59537 -18.57375 -17.49830 -16.84207 -16.48471 -16.28136 -16.03642 -15.55596 -15.02046 -14.81079 -14.40133 -14.23712 -13.69844 -13.46912 -13.36743 -13.21908 -12.91940 -12.80412 -12.72522 -12.64456 -12.54910 -12.34229 -12.23838 -12.12362 -11.96146 -11.46585 -11.32951 -11.02480 -10.87625 -10.53775 -9.39984 -9.13688 -8.17390 -6.26522 1.23885 1.39692 1.40040 1.53354 2.42024 3.08296 3.15985 3.82092 3.94505 4.06668 4.17301 4.24248 4.36878 4.45978 4.56143 4.57562 4.62853 4.72637 4.76396 4.84245 4.86479 4.87745 4.94014 4.97459 5.01873 5.10582 5.13061 5.14446 5.16140 5.28851 5.47783 5.51983 5.56725 5.72492 5.81514 5.89102 6.04682 6.18175 6.26225 6.32845 6.89472 7.41736 8.95091 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.029623 B = 0.005874 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.997984 B = 4765.346115 C = 4991.838665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.144 4.144 3 C -0.171 4.171 4 C -0.112 4.112 5 C 0.084 3.916 6 N -0.527 5.527 7 C 0.074 3.926 8 C -0.071 4.071 9 H 0.051 0.949 10 C -0.112 4.112 11 C 0.035 3.965 12 C -0.526 4.526 13 H 0.061 0.939 14 C -0.003 4.003 15 N -0.937 5.937 16 Si 0.961 3.039 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.052 3.948 21 C -0.116 4.116 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.021 0.979 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.036 0.964 35 H -0.019 1.019 36 H -0.011 1.011 37 H 0.262 0.738 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 -0.825 -16.951 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.144 4.144 3 C -0.172 4.172 4 C -0.169 4.169 5 C -0.043 4.043 6 N -0.248 5.248 7 C -0.054 4.054 8 C -0.089 4.089 9 H 0.069 0.931 10 C -0.169 4.169 11 C -0.003 4.003 12 C -0.564 4.564 13 H 0.079 0.921 14 C -0.200 4.200 15 N -0.578 5.578 16 Si 0.786 3.214 17 H -0.185 1.185 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.076 4.076 21 C -0.155 4.155 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.056 0.944 35 H -0.001 1.001 36 H 0.007 0.993 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.010 -0.856 -16.890 17.638 hybrid contribution -0.714 0.310 1.353 1.561 sum -5.724 -0.546 -15.537 16.567 Atomic orbital electron populations 1.21004 0.91531 1.03345 1.01941 1.20979 0.96678 0.94430 1.02328 1.21718 0.97168 0.95862 1.02475 1.20846 0.99168 0.94853 1.02013 1.21129 0.88800 0.92560 1.01858 1.62734 1.55530 1.02965 1.03604 1.21985 0.97174 0.98746 0.87497 1.21019 0.96306 0.97338 0.94283 0.93077 1.21467 0.94914 1.00151 1.00353 1.18983 0.94157 0.95303 0.91827 1.21649 1.32798 1.10105 0.91822 0.92121 1.25962 0.96254 0.98482 0.99313 1.70113 1.43984 1.34932 1.08737 0.85451 0.78271 0.79129 0.78540 1.18504 1.20536 1.20460 1.22339 0.92317 0.94631 0.98270 1.20993 0.97102 0.95431 1.01956 0.90776 0.90600 0.92542 0.92054 0.90182 0.92380 0.88581 0.90862 0.96115 0.92078 0.91643 0.94399 0.94443 1.00077 0.99312 0.92962 0.89333 0.89948 0.88991 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.70 71.24 0.69 -1.84 16 2 C -0.14 -3.59 5.23 -15.40 -0.08 -3.67 16 3 C -0.17 -4.45 5.36 -15.46 -0.08 -4.53 16 4 C -0.11 -2.49 8.39 71.23 0.60 -1.90 16 5 C 0.08 2.33 5.43 85.39 0.46 2.79 16 6 N -0.53 -15.60 4.43 -900.93 -4.00 -19.60 16 7 C 0.07 2.70 3.47 86.30 0.30 3.00 16 8 C -0.07 -3.01 2.24 -10.79 -0.02 -3.04 16 9 H 0.05 2.21 6.26 -2.39 -0.01 2.20 16 10 C -0.11 -4.40 8.87 71.98 0.64 -3.76 16 11 C 0.03 1.89 4.45 29.85 0.13 2.03 16 12 C -0.53 -30.37 8.34 25.60 0.21 -30.15 16 13 H 0.06 3.38 7.08 -2.91 -0.02 3.36 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 15 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16 16 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 C 0.05 1.25 6.03 86.27 0.52 1.77 16 21 C -0.12 -2.76 5.27 29.75 0.16 -2.60 16 22 H 0.07 1.42 5.37 -2.39 -0.01 1.41 16 23 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.34 7.95 -2.38 -0.02 1.32 16 26 H 0.08 1.46 7.71 -2.39 -0.02 1.44 16 27 H 0.06 1.36 7.43 -2.39 -0.02 1.35 16 28 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.07 2.27 6.00 -2.39 -0.01 2.26 16 30 H 0.02 0.81 6.01 -2.39 -0.01 0.80 16 31 H 0.06 2.26 8.09 -2.39 -0.02 2.24 16 32 H 0.06 2.25 7.80 -2.39 -0.02 2.23 16 33 H 0.04 1.60 6.83 -2.39 -0.02 1.58 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 36 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 1.57 7.14 -2.39 -0.02 1.55 16 Total: -1.00 -64.51 311.99 3.28 -61.23 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.97 Total: 10.83 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 3.99 Total: -41.64 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -3.71 Total: -77.58 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.51 3.28 -61.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.170 kcal (2) G-P(sol) polarization free energy of solvation -64.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds