Wall clock time and date at job start Sun Mar 29 2020 21:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.50698 * 109.46933 * 294.99806 * 4 2 1 6 6 H 1.07995 * 120.00341 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99840 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00071 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46744 * 90.00304 * 9 7 5 11 11 H 1.48498 * 109.46961 * 210.00195 * 9 7 5 12 12 H 1.48497 * 109.47305 * 330.00346 * 9 7 5 13 13 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 14 14 N 1.46901 * 109.47168 * 65.00215 * 13 2 1 15 15 C 1.46897 * 111.00075 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47138 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47255 * 180.02562 * 16 15 14 18 18 C 1.39868 * 126.04277 * 269.69465 * 17 16 15 19 19 N 1.30844 * 108.20319 * 179.81775 * 18 17 16 20 20 N 1.40082 * 108.20595 * 0.43587 * 19 18 17 21 21 H 0.96995 * 126.03789 * 179.69412 * 20 19 18 22 22 C 1.34952 * 107.92288 * 359.72398 * 20 19 18 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 26 26 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 27 27 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 28 28 H 0.97004 * 119.99924 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.46705 * 184.99884 * 13 2 1 30 30 H 1.08993 * 109.47768 * 305.00075 * 13 2 1 31 31 H 1.00908 * 110.99938 * 56.04174 * 14 13 2 32 32 H 1.09003 * 109.47820 * 299.99998 * 15 14 13 33 33 H 1.09001 * 109.46958 * 60.00098 * 15 14 13 34 34 H 1.09004 * 109.47457 * 300.00388 * 16 15 14 35 35 H 1.09001 * 109.47125 * 60.00189 * 16 15 14 36 36 H 1.08001 * 125.89833 * 359.97438 * 18 17 16 37 37 H 1.08005 * 126.12394 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0801 0.9742 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6755 -1.5192 3.8512 9 14 1.4989 0.5630 5.2496 10 1 0.1712 0.0957 5.7231 11 1 2.5080 0.3522 6.3185 12 1 1.4251 2.0083 4.9166 13 6 2.0399 -0.7214 -1.2492 14 7 1.6513 0.0372 -2.4456 15 6 2.1256 -0.6268 -3.6671 16 6 1.7032 0.1912 -4.8891 17 6 2.1892 -0.4903 -6.1423 18 6 3.4188 -0.2738 -6.7729 19 7 3.4803 -1.0485 -7.8254 20 7 2.2860 -1.7763 -7.9036 21 1 2.0565 -2.4247 -8.5876 22 6 1.5107 -1.4156 -6.8596 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -1.7198 1.2952 27 1 3.1264 -0.7995 1.2056 28 1 2.9228 -1.8421 4.7318 29 1 3.1263 -0.7996 -1.2056 30 1 1.6053 -1.7199 -1.2951 31 1 1.9881 0.9872 -2.3967 32 1 3.2125 -0.7041 -3.6402 33 1 1.6918 -1.6248 -3.7299 34 1 0.6163 0.2690 -4.9164 35 1 2.1373 1.1891 -4.8261 36 1 4.1860 0.4124 -6.4459 37 1 0.5254 -1.7975 -6.6362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602671186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:56 Heat of formation + Delta-G solvation = 47.720667 kcal Electronic energy + Delta-G solvation = -15927.618635 eV Core-core repulsion = 13319.496841 eV Total energy + Delta-G solvation = -2608.121794 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.35383 -37.03985 -34.68319 -32.66366 -31.65808 -31.13230 -27.90563 -26.64387 -24.85761 -22.82288 -22.18081 -21.80827 -20.17182 -18.99824 -17.89304 -16.27809 -15.56695 -14.92188 -14.66993 -14.61196 -14.22568 -13.95201 -13.84069 -13.10727 -12.65741 -12.39049 -12.25036 -11.77349 -11.41244 -11.35716 -11.17351 -10.81476 -10.77607 -10.59886 -10.25549 -10.19914 -9.86694 -9.65169 -9.11894 -8.93996 -8.63652 -8.30130 -8.04904 -5.94889 -3.95856 1.68281 2.57671 2.69223 3.35004 3.41167 3.44549 4.41996 4.51771 4.69877 4.73330 5.07203 5.29508 5.38724 5.41088 5.54858 5.66742 5.74762 5.79303 5.95131 6.13185 6.20819 6.22374 6.45264 6.47136 6.60650 6.73544 7.02977 7.06286 7.22490 7.24588 7.42447 7.43425 7.71086 7.75125 7.89599 8.05777 8.49952 9.10749 9.67381 11.16706 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.068231 B = 0.003289 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.271052 B = 8512.356864 C = 8633.029570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.690 5.690 15 C 0.064 3.936 16 C -0.039 4.039 17 C -0.230 4.230 18 C 0.055 3.945 19 N -0.300 5.300 20 N -0.481 5.481 21 H 0.438 0.562 22 C 0.059 3.941 23 H 0.038 0.962 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.259 0.741 29 H 0.023 0.977 30 H 0.064 0.936 31 H 0.336 0.664 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.182 0.818 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 1.068 -20.735 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.320 5.320 15 C -0.066 4.066 16 C -0.078 4.078 17 C -0.242 4.242 18 C -0.132 4.132 19 N -0.123 5.123 20 N -0.189 5.189 21 H 0.281 0.719 22 C -0.088 4.088 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.199 0.801 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.153 0.304 -21.619 21.728 hybrid contribution 0.162 0.426 1.353 1.428 sum -1.991 0.730 -20.266 20.377 Atomic orbital electron populations 1.21585 0.95756 1.00507 1.00115 1.21202 0.95987 0.98923 0.94077 0.92825 1.19125 0.95906 0.95566 0.90489 1.21250 1.34486 1.08286 0.90999 0.92549 1.25028 0.95362 0.95115 0.99102 1.69968 1.39141 1.21308 1.23329 0.86630 0.78200 0.80444 0.82947 1.20730 1.21346 1.19901 1.22134 0.97121 0.97672 0.89509 1.60551 1.64056 1.05771 1.01643 1.21935 0.97175 0.98151 0.89339 1.19856 1.01259 0.97649 0.89052 1.20172 0.96538 1.05257 1.02195 1.23873 0.97788 0.98521 0.92984 1.77313 1.02992 1.10184 1.21801 1.46292 1.13373 1.35765 1.23489 0.71879 1.22456 0.98143 0.98339 0.89861 0.94241 0.92847 0.93891 0.96604 0.96949 0.93126 0.95856 0.91699 0.84652 0.95703 0.91518 0.90566 0.91335 0.80105 0.80634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 14 N -0.69 -9.79 5.96 -113.78 -0.68 -10.46 16 15 C 0.06 0.76 5.67 -3.83 -0.02 0.74 16 16 C -0.04 -0.38 5.96 -27.88 -0.17 -0.55 16 17 C -0.23 -2.24 5.35 -105.05 -0.56 -2.81 16 18 C 0.06 0.57 11.96 -17.36 -0.21 0.36 16 19 N -0.30 -3.37 12.70 30.63 0.39 -2.99 16 20 N -0.48 -4.06 7.36 30.45 0.22 -3.83 16 21 H 0.44 2.26 8.96 -182.62 -1.64 0.62 16 22 C 0.06 0.49 11.90 -17.22 -0.20 0.28 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 25 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.34 4.47 8.73 -39.29 -0.34 4.13 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -32.26 311.05 -8.57 -40.83 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.32 Total: -1.01 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -1.59 Total: -17.53 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.67 Total: -43.76 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.26 -8.57 -40.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.549 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds