Wall clock time and date at job start Sun Mar 29 2020 21:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.50698 * 109.46933 * 294.99806 * 4 2 1 6 6 H 1.07995 * 120.00341 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99840 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00071 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46744 * 90.00304 * 9 7 5 11 11 H 1.48498 * 109.46961 * 210.00195 * 9 7 5 12 12 H 1.48497 * 109.47305 * 330.00346 * 9 7 5 13 13 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 14 14 N 1.46901 * 109.47168 * 65.00215 * 13 2 1 15 15 C 1.46897 * 111.00075 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47138 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47255 * 180.02562 * 16 15 14 18 18 C 1.39868 * 126.04277 * 269.69465 * 17 16 15 19 19 N 1.30844 * 108.20319 * 179.81775 * 18 17 16 20 20 N 1.40082 * 108.20595 * 0.43587 * 19 18 17 21 21 H 0.96995 * 126.03789 * 179.69412 * 20 19 18 22 22 C 1.34952 * 107.92288 * 359.72398 * 20 19 18 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 26 26 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 27 27 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 28 28 H 0.97004 * 119.99924 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.46705 * 184.99884 * 13 2 1 30 30 H 1.08993 * 109.47768 * 305.00075 * 13 2 1 31 31 H 1.00908 * 110.99938 * 56.04174 * 14 13 2 32 32 H 1.09003 * 109.47820 * 299.99998 * 15 14 13 33 33 H 1.09001 * 109.46958 * 60.00098 * 15 14 13 34 34 H 1.09004 * 109.47457 * 300.00388 * 16 15 14 35 35 H 1.09001 * 109.47125 * 60.00189 * 16 15 14 36 36 H 1.08001 * 125.89833 * 359.97438 * 18 17 16 37 37 H 1.08005 * 126.12394 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0801 0.9742 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6755 -1.5192 3.8512 9 14 1.4989 0.5630 5.2496 10 1 0.1712 0.0957 5.7231 11 1 2.5080 0.3522 6.3185 12 1 1.4251 2.0083 4.9166 13 6 2.0399 -0.7214 -1.2492 14 7 1.6513 0.0372 -2.4456 15 6 2.1256 -0.6268 -3.6671 16 6 1.7032 0.1912 -4.8891 17 6 2.1892 -0.4903 -6.1423 18 6 3.4188 -0.2738 -6.7729 19 7 3.4803 -1.0485 -7.8254 20 7 2.2860 -1.7763 -7.9036 21 1 2.0565 -2.4247 -8.5876 22 6 1.5107 -1.4156 -6.8596 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -1.7198 1.2952 27 1 3.1264 -0.7995 1.2056 28 1 2.9228 -1.8421 4.7318 29 1 3.1263 -0.7996 -1.2056 30 1 1.6053 -1.7199 -1.2951 31 1 1.9881 0.9872 -2.3967 32 1 3.2125 -0.7041 -3.6402 33 1 1.6918 -1.6248 -3.7299 34 1 0.6163 0.2690 -4.9164 35 1 2.1373 1.1891 -4.8261 36 1 4.1860 0.4124 -6.4459 37 1 0.5254 -1.7975 -6.6362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602671186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:56 Heat of formation + Delta-G solvation = 25.974345 kcal Electronic energy + Delta-G solvation = -15928.561626 eV Core-core repulsion = 13319.496841 eV Total energy + Delta-G solvation = -2609.064785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.04317 -38.42255 -36.13111 -34.37946 -32.82173 -32.03451 -29.21834 -28.29684 -26.35932 -24.40269 -23.15245 -22.78489 -21.01459 -20.54143 -18.63706 -18.40417 -16.72652 -16.54475 -15.75625 -15.62917 -15.40603 -15.23313 -14.94482 -14.30945 -14.22874 -13.63686 -13.48690 -13.17997 -13.13759 -12.74063 -12.61853 -12.53777 -12.17848 -12.10363 -11.83612 -11.49512 -11.37776 -11.05133 -10.87659 -10.57853 -10.51608 -9.38430 -9.24444 -8.15624 -6.24751 1.01267 1.41892 1.43010 1.53980 1.84417 2.11564 2.43924 3.17838 3.36798 3.96820 4.10023 4.16847 4.30191 4.40834 4.51446 4.57097 4.66178 4.77108 4.89883 4.91467 4.97286 4.98439 5.08047 5.29155 5.34612 5.43505 5.51037 5.55326 5.60462 5.74754 5.85062 5.91736 6.14478 6.34293 6.48162 6.60792 6.74561 6.91779 7.43590 8.96571 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.068231 B = 0.003289 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.271052 B = 8512.356864 C = 8633.029570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 H 0.055 0.945 4 C 0.031 3.969 5 C -0.528 4.528 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.262 1.262 13 C 0.077 3.923 14 N -0.684 5.684 15 C 0.067 3.933 16 C -0.025 4.025 17 C -0.251 4.251 18 C 0.045 3.955 19 N -0.337 5.337 20 N -0.475 5.475 21 H 0.450 0.550 22 C 0.070 3.930 23 H 0.033 0.967 24 H 0.037 0.963 25 H 0.070 0.930 26 H -0.011 1.011 27 H -0.016 1.016 28 H 0.261 0.739 29 H 0.014 0.986 30 H 0.059 0.941 31 H 0.344 0.656 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.193 0.807 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 2.078 -21.440 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.007 4.007 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.186 1.186 13 C -0.052 4.052 14 N -0.315 5.315 15 C -0.062 4.062 16 C -0.064 4.064 17 C -0.263 4.263 18 C -0.141 4.141 19 N -0.160 5.160 20 N -0.184 5.184 21 H 0.296 0.704 22 C -0.078 4.078 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.007 0.993 27 H 0.003 0.997 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.162 0.838 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.210 0.790 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.430 1.320 -22.358 22.658 hybrid contribution 0.561 0.061 1.515 1.616 sum -2.869 1.382 -20.844 21.086 Atomic orbital electron populations 1.21486 0.94540 1.00328 1.00635 1.21024 0.96852 0.98457 0.93054 0.92635 1.19028 0.94008 0.94694 0.92925 1.21663 1.34284 1.08607 0.92046 0.91943 1.25975 0.95285 0.96127 1.02727 1.70108 1.40395 1.23068 1.24241 0.85495 0.77960 0.79344 0.78556 1.19884 1.21026 1.18628 1.21826 0.96294 0.97359 0.89740 1.60486 1.63966 1.05965 1.01056 1.21960 0.96723 0.98315 0.89204 1.19695 1.01544 0.97408 0.87765 1.20260 0.96830 1.06480 1.02725 1.24191 0.98480 0.98563 0.92870 1.77258 1.04615 1.11393 1.22754 1.46354 1.12673 1.35535 1.23886 0.70363 1.22969 0.98883 0.97086 0.88860 0.94764 0.94424 0.91111 0.99307 0.99743 0.92983 0.96822 0.92284 0.83783 0.96356 0.91885 0.89932 0.90709 0.78972 0.77561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.24 8.89 71.98 0.64 -3.60 16 2 C -0.07 -3.05 2.48 -10.79 -0.03 -3.08 16 3 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.03 1.65 4.45 29.85 0.13 1.78 16 5 C -0.53 -30.02 8.41 25.60 0.22 -29.80 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 8 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 9 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 13 C 0.08 2.65 5.07 86.30 0.44 3.09 16 14 N -0.68 -18.13 5.96 -513.89 -3.06 -21.19 16 15 C 0.07 1.50 5.67 86.30 0.49 1.99 16 16 C -0.03 -0.43 5.96 29.85 0.18 -0.25 16 17 C -0.25 -4.42 5.35 -20.14 -0.11 -4.53 16 18 C 0.04 0.88 11.96 85.23 1.02 1.90 16 19 N -0.34 -7.27 12.70 -57.02 -0.72 -7.99 16 20 N -0.48 -7.20 7.36 -57.58 -0.42 -7.63 16 21 H 0.45 3.88 8.96 -213.34 -1.91 1.96 16 22 C 0.07 0.99 11.90 83.54 0.99 1.98 16 23 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.04 1.51 6.95 -2.39 -0.02 1.49 16 25 H 0.07 2.27 7.75 -2.39 -0.02 2.25 16 26 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 27 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.34 8.40 8.73 -89.69 -0.78 7.61 16 32 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.19 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.21 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -69.35 311.05 0.90 -68.45 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -1.64 Total: 9.56 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 4.43 Total: -30.32 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -3.92 Total: -94.37 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -69.35 0.90 -68.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.427 kcal (2) G-P(sol) polarization free energy of solvation -69.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds