Wall clock time and date at job start Sun Mar 29 2020 21:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47288 * 179.97438 * 16 15 14 18 18 C 1.39862 * 126.03875 * 269.69354 * 17 16 15 19 19 N 1.30841 * 108.19906 * 179.81738 * 18 17 16 20 20 N 1.40078 * 108.20588 * 0.43558 * 19 18 17 21 21 H 0.97004 * 126.03564 * 179.69116 * 20 19 18 22 22 C 1.34946 * 107.92635 * 359.71995 * 20 19 18 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 27 27 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 28 28 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 30 30 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 31 31 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 32 32 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 33 33 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 34 34 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 35 35 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 36 36 H 1.08001 * 125.90349 * 359.97438 * 18 17 16 37 37 H 1.08001 * 126.12936 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1893 -0.4899 6.1424 18 6 1.4857 -1.4419 6.8871 19 7 2.2324 -1.8024 7.8992 20 7 3.4325 -1.0827 7.8359 21 1 4.1700 -1.1465 8.4629 22 6 3.3813 -0.2845 6.7490 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.1264 -0.7995 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 2.9246 -1.8413 -4.7316 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 1.9881 0.9873 2.3966 32 1 1.6920 -1.6245 3.7300 33 1 3.2126 -0.7037 3.6401 34 1 2.1373 1.1894 4.8260 35 1 0.6164 0.2691 4.9165 36 1 0.4978 -1.8168 6.6638 37 1 4.1534 0.3961 6.4218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602671187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:59 Heat of formation + Delta-G solvation = 47.806903 kcal Electronic energy + Delta-G solvation = -15927.743529 eV Core-core repulsion = 13319.625474 eV Total energy + Delta-G solvation = -2608.118055 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35588 -37.04254 -34.68403 -32.66626 -31.66171 -31.12903 -27.90925 -26.64325 -24.86020 -22.81954 -22.15495 -21.83398 -20.18508 -18.98476 -17.90357 -16.28627 -15.54335 -14.96022 -14.66932 -14.60851 -14.23857 -13.95735 -13.79105 -13.01864 -12.91226 -12.28778 -12.10851 -11.88514 -11.40888 -11.39116 -11.10566 -10.84288 -10.74916 -10.62896 -10.25628 -10.17816 -9.86371 -9.65552 -9.12184 -8.93019 -8.63849 -8.30668 -8.05122 -5.95227 -3.96121 1.67796 2.58185 2.69019 3.33728 3.41280 3.45496 4.42696 4.52067 4.66506 4.71622 5.12468 5.30439 5.36208 5.40805 5.50147 5.65857 5.77181 5.78720 5.94927 6.13602 6.21518 6.24194 6.44493 6.47930 6.60827 6.74082 7.02543 7.06712 7.23256 7.24919 7.42901 7.43329 7.70914 7.75059 7.89487 8.05594 8.49758 9.10737 9.67210 11.16409 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.068195 B = 0.003289 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.487782 B = 8510.392167 C = 8634.614890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.064 3.936 16 C -0.039 4.039 17 C -0.229 4.229 18 C 0.057 3.943 19 N -0.300 5.300 20 N -0.481 5.481 21 H 0.438 0.562 22 C 0.056 3.944 23 H 0.052 0.948 24 H 0.039 0.961 25 H 0.042 0.958 26 H 0.012 0.988 27 H 0.016 0.984 28 H 0.258 0.742 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.336 0.664 32 H 0.069 0.931 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.184 0.816 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 3.100 20.548 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.320 5.320 15 C -0.066 4.066 16 C -0.078 4.078 17 C -0.241 4.241 18 C -0.129 4.129 19 N -0.123 5.123 20 N -0.189 5.189 21 H 0.281 0.719 22 C -0.091 4.091 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.201 0.799 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.537 1.952 21.471 21.566 hybrid contribution 1.217 1.050 -1.419 2.144 sum 1.754 3.002 20.052 20.351 Atomic orbital electron populations 1.21585 0.95713 1.00557 1.00131 1.21202 0.96029 0.98875 0.94066 0.92870 1.19131 0.95879 0.95607 0.90509 1.21289 1.34399 1.08251 0.90988 0.92493 1.25030 0.95378 0.95115 0.99116 1.69977 1.39209 1.21328 1.23229 0.86577 0.78219 0.80152 0.83306 1.19731 1.21158 1.21094 1.22136 0.97052 0.97738 0.89504 1.60538 1.64073 1.05704 1.01646 1.21939 0.96925 0.98396 0.89318 1.19861 1.01618 0.97305 0.89044 1.20174 0.95878 1.05782 1.02242 1.23893 1.00080 0.96464 0.92502 1.77318 0.93319 1.18346 1.23282 1.46288 1.16334 1.33272 1.23039 0.71903 1.22431 0.99548 0.97332 0.89776 0.92846 0.94196 0.93869 0.96982 0.96561 0.93184 0.91626 0.95931 0.84735 0.91288 0.95947 0.91655 0.90239 0.79922 0.80825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.06 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.92 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.06 1.12 5.07 -3.83 -0.02 1.10 16 14 N -0.69 -9.77 5.96 -113.78 -0.68 -10.45 16 15 C 0.06 0.77 5.67 -3.82 -0.02 0.75 16 16 C -0.04 -0.38 5.96 -27.88 -0.17 -0.55 16 17 C -0.23 -2.23 5.35 -105.06 -0.56 -2.80 16 18 C 0.06 0.59 11.96 -17.37 -0.21 0.39 16 19 N -0.30 -3.37 12.70 30.62 0.39 -2.98 16 20 N -0.48 -4.06 7.36 30.45 0.22 -3.83 16 21 H 0.44 2.26 8.96 -182.61 -1.64 0.62 16 22 C 0.06 0.46 11.90 -17.22 -0.21 0.26 16 23 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.34 4.42 8.73 -39.29 -0.34 4.08 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -32.26 311.06 -8.57 -40.83 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.32 Total: -1.04 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -1.59 Total: -17.52 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.67 Total: -43.73 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.26 -8.57 -40.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.634 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds