Wall clock time and date at job start Sun Mar 29 2020 21:39:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47070 * 2 1
4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3
5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1
6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2
7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2
8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4
9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4
10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5
11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5
12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5
13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3
14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1
15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2
16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13
17 17 C 1.50698 * 109.47288 * 179.97438 * 16 15 14
18 18 C 1.39862 * 126.03875 * 269.69354 * 17 16 15
19 19 N 1.30841 * 108.19906 * 179.81738 * 18 17 16
20 20 N 1.40078 * 108.20588 * 0.43558 * 19 18 17
21 21 H 0.97004 * 126.03564 * 179.69116 * 20 19 18
22 22 C 1.34946 * 107.92635 * 359.71995 * 20 19 18
23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3
24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3
25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3
26 26 H 1.09002 * 109.47069 * 184.99942 * 4 2 1
27 27 H 1.08991 * 109.47625 * 305.00262 * 4 2 1
28 28 H 0.96998 * 119.99928 * 179.97438 * 8 7 5
29 29 H 1.09000 * 109.47325 * 55.00085 * 13 2 1
30 30 H 1.09008 * 109.47017 * 174.99994 * 13 2 1
31 31 H 1.00905 * 110.99804 * 303.95405 * 14 13 2
32 32 H 1.08991 * 109.46891 * 299.99685 * 15 14 13
33 33 H 1.09001 * 109.47244 * 59.99987 * 15 14 13
34 34 H 1.09001 * 109.46816 * 300.00451 * 16 15 14
35 35 H 1.09001 * 109.46992 * 59.99871 * 16 15 14
36 36 H 1.08001 * 125.90349 * 359.97438 * 18 17 16
37 37 H 1.08001 * 126.12936 * 180.02562 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 1.6414 0.0570 -2.4766
6 1 1.0808 0.9745 -2.3757
7 6 1.9933 -0.4018 -3.7282
8 7 2.6774 -1.5183 -3.8510
9 14 1.4998 0.5633 -5.2495
10 1 0.7433 1.7749 -4.8434
11 1 2.7182 0.9681 -5.9958
12 1 0.6461 -0.2856 -6.1189
13 6 2.0399 -0.7212 1.2493
14 7 1.6513 0.0374 2.4456
15 6 2.1257 -0.6266 3.6672
16 6 1.7033 0.1915 4.8892
17 6 2.1893 -0.4899 6.1424
18 6 1.4857 -1.4419 6.8871
19 7 2.2324 -1.8024 7.8992
20 7 3.4325 -1.0827 7.8359
21 1 4.1700 -1.1465 8.4629
22 6 3.3813 -0.2845 6.7490
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5139 0.8899
26 1 3.1264 -0.7995 -1.2055
27 1 1.6055 -1.7198 -1.2951
28 1 2.9246 -1.8413 -4.7316
29 1 1.6053 -1.7198 1.2952
30 1 3.1263 -0.7995 1.2056
31 1 1.9881 0.9873 2.3966
32 1 1.6920 -1.6245 3.7300
33 1 3.2126 -0.7037 3.6401
34 1 2.1373 1.1894 4.8260
35 1 0.6164 0.2691 4.9165
36 1 0.4978 -1.8168 6.6638
37 1 4.1534 0.3961 6.4218
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602671187.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:39:59
Heat of formation + Delta-G solvation = 47.806903 kcal
Electronic energy + Delta-G solvation = -15927.743529 eV
Core-core repulsion = 13319.625474 eV
Total energy + Delta-G solvation = -2608.118055 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 237.154 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.35588 -37.04254 -34.68403 -32.66626 -31.66171 -31.12903 -27.90925 -26.64325
-24.86020 -22.81954 -22.15495 -21.83398 -20.18508 -18.98476 -17.90357 -16.28627
-15.54335 -14.96022 -14.66932 -14.60851 -14.23857 -13.95735 -13.79105 -13.01864
-12.91226 -12.28778 -12.10851 -11.88514 -11.40888 -11.39116 -11.10566 -10.84288
-10.74916 -10.62896 -10.25628 -10.17816 -9.86371 -9.65552 -9.12184 -8.93019
-8.63849 -8.30668 -8.05122 -5.95227 -3.96121 1.67796 2.58185 2.69019
3.33728 3.41280 3.45496 4.42696 4.52067 4.66506 4.71622 5.12468
5.30439 5.36208 5.40805 5.50147 5.65857 5.77181 5.78720 5.94927
6.13602 6.21518 6.24194 6.44493 6.47930 6.60827 6.74082 7.02543
7.06712 7.23256 7.24919 7.42901 7.43329 7.70914 7.75059 7.89487
8.05594 8.49758 9.10737 9.67210 11.16409
Molecular weight = 237.15amu
Principal moments of inertia in cm(-1)
A = 0.068195 B = 0.003289 C = 0.003242
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 410.487782 B = 8510.392167 C = 8634.614890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.083 4.083
3 H 0.053 0.947
4 C 0.026 3.974
5 C -0.511 4.511
6 H 0.057 0.943
7 C 0.054 3.946
8 N -0.898 5.898
9 Si 0.889 3.111
10 H -0.273 1.273
11 H -0.285 1.285
12 H -0.285 1.285
13 C 0.064 3.936
14 N -0.689 5.689
15 C 0.064 3.936
16 C -0.039 4.039
17 C -0.229 4.229
18 C 0.057 3.943
19 N -0.300 5.300
20 N -0.481 5.481
21 H 0.438 0.562
22 C 0.056 3.944
23 H 0.052 0.948
24 H 0.039 0.961
25 H 0.042 0.958
26 H 0.012 0.988
27 H 0.016 0.984
28 H 0.258 0.742
29 H 0.065 0.935
30 H 0.022 0.978
31 H 0.336 0.664
32 H 0.069 0.931
33 H 0.022 0.978
34 H 0.065 0.935
35 H 0.079 0.921
36 H 0.184 0.816
37 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.018 3.100 20.548 20.805
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.102 4.102
3 H 0.071 0.929
4 C -0.011 4.011
5 C -0.549 4.549
6 H 0.075 0.925
7 C -0.146 4.146
8 N -0.537 5.537
9 Si 0.717 3.283
10 H -0.197 1.197
11 H -0.212 1.212
12 H -0.211 1.211
13 C -0.064 4.064
14 N -0.320 5.320
15 C -0.066 4.066
16 C -0.078 4.078
17 C -0.241 4.241
18 C -0.129 4.129
19 N -0.123 5.123
20 N -0.189 5.189
21 H 0.281 0.719
22 C -0.091 4.091
23 H 0.072 0.928
24 H 0.058 0.942
25 H 0.061 0.939
26 H 0.030 0.970
27 H 0.034 0.966
28 H 0.068 0.932
29 H 0.084 0.916
30 H 0.041 0.959
31 H 0.153 0.847
32 H 0.087 0.913
33 H 0.041 0.959
34 H 0.083 0.917
35 H 0.098 0.902
36 H 0.201 0.799
37 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges 0.537 1.952 21.471 21.566
hybrid contribution 1.217 1.050 -1.419 2.144
sum 1.754 3.002 20.052 20.351
Atomic orbital electron populations
1.21585 0.95713 1.00557 1.00131 1.21202 0.96029 0.98875 0.94066
0.92870 1.19131 0.95879 0.95607 0.90509 1.21289 1.34399 1.08251
0.90988 0.92493 1.25030 0.95378 0.95115 0.99116 1.69977 1.39209
1.21328 1.23229 0.86577 0.78219 0.80152 0.83306 1.19731 1.21158
1.21094 1.22136 0.97052 0.97738 0.89504 1.60538 1.64073 1.05704
1.01646 1.21939 0.96925 0.98396 0.89318 1.19861 1.01618 0.97305
0.89044 1.20174 0.95878 1.05782 1.02242 1.23893 1.00080 0.96464
0.92502 1.77318 0.93319 1.18346 1.23282 1.46288 1.16334 1.33272
1.23039 0.71903 1.22431 0.99548 0.97332 0.89776 0.92846 0.94196
0.93869 0.96982 0.96561 0.93184 0.91626 0.95931 0.84735 0.91288
0.95947 0.91655 0.90239 0.79922 0.80825
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.40 8.89 37.16 0.33 -2.06 16
2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.92 16
3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16
4 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16
5 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16
6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16
7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16
8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16
9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16
10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
13 C 0.06 1.12 5.07 -3.83 -0.02 1.10 16
14 N -0.69 -9.77 5.96 -113.78 -0.68 -10.45 16
15 C 0.06 0.77 5.67 -3.82 -0.02 0.75 16
16 C -0.04 -0.38 5.96 -27.88 -0.17 -0.55 16
17 C -0.23 -2.23 5.35 -105.06 -0.56 -2.80 16
18 C 0.06 0.59 11.96 -17.37 -0.21 0.39 16
19 N -0.30 -3.37 12.70 30.62 0.39 -2.98 16
20 N -0.48 -4.06 7.36 30.45 0.22 -3.83 16
21 H 0.44 2.26 8.96 -182.61 -1.64 0.62 16
22 C 0.06 0.46 11.90 -17.22 -0.21 0.26 16
23 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16
24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
25 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16
26 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16
27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
30 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16
31 H 0.34 4.42 8.73 -39.29 -0.34 4.08 16
32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16
33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16
34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16
37 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16
LS Contribution 311.06 15.07 4.69 4.69
Total: -1.00 -32.26 311.06 -8.57 -40.83
By element:
Atomic # 1 Polarization: 6.28 SS G_CDS: -7.32 Total: -1.04 kcal
Atomic # 6 Polarization: -15.93 SS G_CDS: -1.59 Total: -17.52 kcal
Atomic # 7 Polarization: -44.40 SS G_CDS: 0.67 Total: -43.73 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -32.26 -8.57 -40.83 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602671187.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.634 kcal
(2) G-P(sol) polarization free energy of solvation -32.256 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.378 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds