Wall clock time and date at job start Sun Mar 29 2020 21:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47288 * 179.97438 * 16 15 14 18 18 C 1.39862 * 126.03875 * 269.69354 * 17 16 15 19 19 N 1.30841 * 108.19906 * 179.81738 * 18 17 16 20 20 N 1.40078 * 108.20588 * 0.43558 * 19 18 17 21 21 H 0.97004 * 126.03564 * 179.69116 * 20 19 18 22 22 C 1.34946 * 107.92635 * 359.71995 * 20 19 18 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 27 27 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 28 28 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 30 30 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 31 31 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 32 32 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 33 33 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 34 34 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 35 35 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 36 36 H 1.08001 * 125.90349 * 359.97438 * 18 17 16 37 37 H 1.08001 * 126.12936 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 0.7433 1.7749 -4.8434 11 1 2.7182 0.9681 -5.9958 12 1 0.6461 -0.2856 -6.1189 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1893 -0.4899 6.1424 18 6 1.4857 -1.4419 6.8871 19 7 2.2324 -1.8024 7.8992 20 7 3.4325 -1.0827 7.8359 21 1 4.1700 -1.1465 8.4629 22 6 3.3813 -0.2845 6.7490 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.1264 -0.7995 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 2.9246 -1.8413 -4.7316 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 1.9881 0.9873 2.3966 32 1 1.6920 -1.6245 3.7300 33 1 3.2126 -0.7037 3.6401 34 1 2.1373 1.1894 4.8260 35 1 0.6164 0.2691 4.9165 36 1 0.4978 -1.8168 6.6638 37 1 4.1534 0.3961 6.4218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602671187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:58 Heat of formation + Delta-G solvation = 26.046640 kcal Electronic energy + Delta-G solvation = -15928.687124 eV Core-core repulsion = 13319.625474 eV Total energy + Delta-G solvation = -2609.061650 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.04489 -38.42411 -36.13212 -34.37951 -32.82504 -32.03251 -29.21855 -28.30072 -26.36401 -24.40741 -23.10012 -22.83046 -21.02765 -20.53061 -18.63179 -18.41661 -16.70482 -16.55879 -15.77426 -15.67771 -15.35061 -15.23162 -14.88340 -14.38737 -14.22238 -13.71628 -13.30986 -13.28123 -13.11915 -12.76345 -12.64368 -12.52757 -12.17980 -12.01799 -11.88709 -11.49778 -11.37172 -11.05127 -10.87089 -10.57692 -10.52232 -9.38198 -9.23779 -8.15744 -6.24760 1.01027 1.41513 1.42063 1.55225 1.84737 2.11508 2.43856 3.17801 3.37259 3.94597 4.11506 4.16212 4.30943 4.41949 4.53742 4.59121 4.61773 4.74760 4.83357 4.95238 4.97192 5.01315 5.08122 5.28738 5.34582 5.45753 5.51140 5.55213 5.60454 5.74231 5.85051 5.91856 6.14738 6.34363 6.48017 6.62807 6.74670 6.91966 7.43634 8.96648 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.068195 B = 0.003289 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.487782 B = 8510.392167 C = 8634.614890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 H 0.057 0.943 4 C 0.031 3.969 5 C -0.526 4.526 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.077 3.923 14 N -0.685 5.685 15 C 0.068 3.932 16 C -0.025 4.025 17 C -0.250 4.250 18 C 0.046 3.954 19 N -0.337 5.337 20 N -0.475 5.475 21 H 0.450 0.550 22 C 0.068 3.932 23 H 0.037 0.963 24 H 0.032 0.968 25 H 0.069 0.931 26 H -0.015 1.015 27 H -0.012 1.012 28 H 0.261 0.739 29 H 0.056 0.944 30 H 0.016 0.984 31 H 0.345 0.655 32 H 0.058 0.942 33 H 0.023 0.977 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.194 0.806 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 4.787 21.188 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.007 4.007 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.052 4.052 14 N -0.316 5.316 15 C -0.062 4.062 16 C -0.064 4.064 17 C -0.262 4.262 18 C -0.140 4.140 19 N -0.160 5.160 20 N -0.185 5.185 21 H 0.296 0.704 22 C -0.080 4.080 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.004 0.996 27 H 0.006 0.994 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.163 0.837 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.211 0.789 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.403 3.648 22.146 22.448 hybrid contribution 1.310 0.504 -1.564 2.102 sum 1.714 4.151 20.582 21.066 Atomic orbital electron populations 1.21488 0.94666 1.00279 1.00614 1.21022 0.96755 0.98508 0.93056 0.92500 1.19033 0.94052 0.94673 0.92930 1.21690 1.34189 1.08545 0.92036 0.91944 1.25974 0.95312 0.96127 1.02729 1.70113 1.40446 1.23078 1.24184 0.85444 0.78043 0.78921 0.78932 1.18420 1.20567 1.20646 1.21821 0.96359 0.97287 0.89726 1.60452 1.64130 1.05982 1.01049 1.21951 0.96836 0.98205 0.89175 1.19698 1.01541 0.97434 0.87753 1.20260 0.96748 1.06535 1.02697 1.24197 1.00682 0.96612 0.92477 1.77263 0.94613 1.19846 1.24265 1.46353 1.16048 1.32683 1.23391 0.70379 1.22954 0.99587 0.96639 0.88800 0.94413 0.94864 0.91160 0.99638 0.99376 0.92991 0.92502 0.96617 0.83675 0.92387 0.95860 0.90184 0.90448 0.78943 0.77594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 2 C -0.07 -3.03 2.48 -10.79 -0.03 -3.06 16 3 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.03 1.63 4.45 29.85 0.13 1.76 16 5 C -0.53 -29.90 8.41 25.60 0.22 -29.68 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 9 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 C 0.08 2.66 5.07 86.30 0.44 3.09 16 14 N -0.68 -18.14 5.96 -513.89 -3.06 -21.20 16 15 C 0.07 1.51 5.67 86.30 0.49 1.99 16 16 C -0.03 -0.43 5.96 29.85 0.18 -0.26 16 17 C -0.25 -4.41 5.35 -20.15 -0.11 -4.52 16 18 C 0.05 0.91 11.96 85.23 1.02 1.93 16 19 N -0.34 -7.28 12.70 -57.03 -0.72 -8.00 16 20 N -0.48 -7.18 7.36 -57.59 -0.42 -7.61 16 21 H 0.45 3.85 8.96 -213.33 -1.91 1.94 16 22 C 0.07 0.95 11.90 83.54 0.99 1.94 16 23 H 0.04 1.53 6.95 -2.39 -0.02 1.51 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 2.29 7.75 -2.39 -0.02 2.27 16 26 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 28 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.35 8.21 8.73 -89.69 -0.78 7.42 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -69.43 311.06 0.89 -68.54 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -1.64 Total: 9.36 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.43 Total: -30.26 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -3.92 Total: -94.29 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -69.43 0.89 -68.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.583 kcal (2) G-P(sol) polarization free energy of solvation -69.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds