Wall clock time and date at job start Sun Mar 29 2020 21:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46535 * 2 1 4 4 C 1.34951 * 126.03618 * 125.00423 * 3 2 1 5 5 C 1.35306 * 107.74744 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.04383 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46951 * 89.99591 * 6 5 4 8 8 N 1.46901 * 109.46984 * 180.02562 * 7 6 5 9 9 C 1.46897 * 111.00336 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47111 * 325.00006 * 9 8 7 11 11 C 1.53005 * 109.47196 * 84.99406 * 9 8 7 12 12 C 1.50691 * 109.47694 * 205.00049 * 9 8 7 13 13 H 1.08005 * 119.99916 * 354.48174 * 12 9 8 14 14 C 1.37879 * 120.00577 * 174.47966 * 12 9 8 15 15 N 1.31510 * 120.00198 * 164.58060 * 14 12 9 16 16 Si 1.86797 * 119.99486 * 344.86619 * 14 12 9 17 17 H 1.48500 * 109.47007 * 269.71594 * 16 14 12 18 18 H 1.48498 * 109.47775 * 29.72179 * 16 14 12 19 19 H 1.48508 * 109.46999 * 149.72292 * 16 14 12 20 20 C 1.39870 * 107.91970 * 0.25962 * 5 4 3 21 21 N 1.30835 * 108.20260 * 359.55464 * 20 5 4 22 22 H 1.09001 * 109.47631 * 300.00078 * 1 2 3 23 23 H 1.09004 * 109.47196 * 60.00042 * 1 2 3 24 24 H 1.09001 * 109.47061 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47314 * 240.00254 * 2 1 3 26 26 H 1.09000 * 109.46741 * 119.99374 * 2 1 3 27 27 H 1.08003 * 126.12352 * 0.02880 * 4 3 2 28 28 H 1.09006 * 109.46641 * 330.00016 * 6 5 4 29 29 H 1.08999 * 109.47544 * 210.00092 * 6 5 4 30 30 H 1.08989 * 109.47114 * 60.00518 * 7 6 5 31 31 H 1.08998 * 109.47053 * 299.99896 * 7 6 5 32 32 H 1.00905 * 111.00052 * 303.95588 * 8 7 6 33 33 H 1.08994 * 109.47024 * 173.54296 * 11 9 8 34 34 H 1.08994 * 109.47388 * 293.55052 * 11 9 8 35 35 H 1.09005 * 109.46503 * 53.54384 * 11 9 8 36 36 H 0.96999 * 120.00545 * 355.19703 * 15 14 12 37 37 H 1.08009 * 125.89594 * 179.74045 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0710 3.2138 0.5464 6 6 3.9537 4.2004 1.2666 7 6 5.3668 4.1411 0.6831 8 7 6.2274 5.1023 1.3855 9 6 7.5951 5.0737 0.8503 10 1 7.8507 4.0543 0.5609 11 6 7.6833 5.9884 -0.3730 12 6 8.5579 5.5524 1.9060 13 1 8.1841 5.9323 2.8454 14 6 9.9160 5.5055 1.6729 15 7 10.7388 6.1865 2.4401 16 14 10.5865 4.4808 0.2623 17 1 10.8790 3.1068 0.7439 18 1 9.5796 4.4195 -0.8274 19 1 11.8342 5.1014 -0.2509 20 6 2.3066 3.4744 -0.5956 21 7 1.6799 2.3750 -0.9275 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.3191 1.4126 1.7357 28 1 3.9877 3.9507 2.3271 29 1 3.5513 5.2058 1.1428 30 1 5.3328 4.3907 -0.3773 31 1 5.7691 3.1357 0.8070 32 1 5.8413 6.0335 1.3405 33 1 8.7205 6.0572 -0.7011 34 1 7.0740 5.5781 -1.1782 35 1 7.3183 6.9815 -0.1111 36 1 10.3872 6.7762 3.1253 37 1 2.2467 4.4193 -1.1155 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:36 Heat of formation + Delta-G solvation = 67.215284 kcal Electronic energy + Delta-G solvation = -16294.635768 eV Core-core repulsion = 13687.359324 eV Total energy + Delta-G solvation = -2607.276444 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.20282 -36.51929 -34.79859 -33.12410 -31.62340 -30.29606 -29.04707 -26.32555 -24.63309 -23.93292 -22.03708 -20.73979 -20.09186 -19.66121 -17.39144 -16.94436 -15.59650 -14.98111 -14.58122 -14.33047 -14.09510 -13.84094 -13.43506 -13.04327 -12.80812 -12.54723 -12.37884 -12.12966 -11.95083 -11.74268 -11.47148 -11.29477 -10.87081 -10.74492 -10.49081 -10.26618 -10.01652 -9.54518 -9.42936 -8.83726 -8.30601 -8.19530 -7.34156 -6.33983 -3.94533 1.88693 2.44612 2.84149 3.45086 3.46513 3.61760 4.28408 4.56412 4.65068 4.79253 4.89239 4.96195 5.15500 5.26643 5.34629 5.38765 5.43390 5.62131 5.76457 5.82045 5.94744 6.00732 6.09667 6.33616 6.43685 6.49344 6.58864 6.67669 6.75007 6.93500 7.00843 7.25508 7.69662 7.89585 8.35796 8.45031 8.54584 9.09766 9.72666 11.03907 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043653 B = 0.004253 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.274706 B = 6581.983641 C = 6733.840647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.377 5.377 4 C 0.053 3.947 5 C -0.224 4.224 6 C -0.039 4.039 7 C 0.064 3.936 8 N -0.677 5.677 9 C 0.188 3.812 10 H 0.026 0.974 11 C -0.174 4.174 12 C -0.580 4.580 13 H 0.062 0.938 14 C 0.027 3.973 15 N -0.913 5.913 16 Si 1.042 2.958 17 H -0.287 1.287 18 H -0.274 1.274 19 H -0.287 1.287 20 C 0.050 3.950 21 N -0.301 5.301 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.172 0.828 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.327 0.673 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.043 0.957 36 H 0.268 0.732 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.719 -10.609 -5.249 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.161 5.161 4 C -0.092 4.092 5 C -0.236 4.236 6 C -0.078 4.078 7 C -0.066 4.066 8 N -0.306 5.306 9 C 0.078 3.922 10 H 0.044 0.956 11 C -0.234 4.234 12 C -0.618 4.618 13 H 0.081 0.919 14 C -0.177 4.177 15 N -0.548 5.548 16 Si 0.871 3.129 17 H -0.214 1.214 18 H -0.200 1.200 19 H -0.213 1.213 20 C -0.136 4.136 21 N -0.122 5.122 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.190 0.810 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -18.018 -12.265 -6.273 22.681 hybrid contribution -0.902 1.298 0.417 1.635 sum -18.920 -10.966 -5.856 22.639 Atomic orbital electron populations 1.22050 0.93978 1.02659 1.03532 1.21633 0.95899 0.77803 1.03645 1.48607 1.36053 1.10004 1.21420 1.22381 0.95577 0.94791 0.96497 1.20180 1.06968 0.95353 1.01088 1.19886 0.92677 0.96278 0.98927 1.21940 0.92019 0.97729 0.94945 1.60733 1.02983 1.09491 1.57432 1.19543 0.86169 0.94421 0.92036 0.95627 1.22841 1.00778 1.00591 0.99160 1.22020 0.91619 1.45798 1.02402 0.91938 1.25677 0.93506 0.97229 1.01327 1.70792 1.37697 1.25168 1.21158 0.84135 0.75772 0.76572 0.76422 1.21413 1.19998 1.21320 1.23805 0.96034 0.97345 0.96412 1.77242 1.24287 0.96944 1.13769 0.92126 0.91174 0.90863 0.90009 0.88735 0.81047 0.90799 0.91690 0.96494 0.92020 0.85617 0.92784 0.96152 0.93775 0.92254 0.80338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 10.10 37.16 0.38 -0.77 16 2 C 0.13 1.02 7.23 -4.04 -0.03 0.99 16 3 N -0.38 -4.44 3.68 -61.37 -0.23 -4.66 16 4 C 0.05 0.63 11.36 -17.23 -0.20 0.44 16 5 C -0.22 -2.98 5.35 -105.06 -0.56 -3.54 16 6 C -0.04 -0.54 5.96 -27.88 -0.17 -0.71 16 7 C 0.06 1.10 5.47 -3.82 -0.02 1.08 16 8 N -0.68 -14.15 6.23 -107.96 -0.67 -14.82 16 9 C 0.19 4.54 2.12 -68.87 -0.15 4.39 16 10 H 0.03 0.64 6.43 -51.93 -0.33 0.31 16 11 C -0.17 -3.88 8.45 37.16 0.31 -3.57 16 12 C -0.58 -16.63 9.12 -34.44 -0.31 -16.95 16 13 H 0.06 1.95 8.06 -52.48 -0.42 1.53 16 14 C 0.03 0.78 5.33 -17.82 -0.09 0.68 16 15 N -0.91 -28.52 13.70 55.43 0.76 -27.76 16 16 Si 1.04 25.56 26.17 -169.99 -4.45 21.11 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.20 5.53 56.52 0.31 -5.89 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 C 0.05 0.66 11.96 -17.37 -0.21 0.45 16 21 N -0.30 -4.15 12.42 30.63 0.38 -3.77 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 27 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.02 0.30 7.57 -51.94 -0.39 -0.10 16 31 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 32 H 0.33 6.45 8.39 -39.29 -0.33 6.12 16 33 H 0.05 1.25 5.06 -51.93 -0.26 0.98 16 34 H 0.02 0.39 7.63 -51.93 -0.40 0.00 16 35 H 0.04 0.94 8.01 -51.93 -0.42 0.53 16 36 H 0.27 8.32 8.73 -40.82 -0.36 7.97 16 37 H 0.18 1.95 8.06 -52.48 -0.42 1.52 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -32.91 305.35 -6.67 -39.58 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.01 Total: 3.22 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -1.05 Total: -17.49 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.24 Total: -51.01 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -4.45 Total: 21.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.91 -6.67 -39.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.792 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds