Wall clock time and date at job start Sun Mar 29 2020 21:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46535 * 2 1 4 4 C 1.34951 * 126.03618 * 125.00423 * 3 2 1 5 5 C 1.35306 * 107.74744 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.04383 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46951 * 89.99591 * 6 5 4 8 8 N 1.46901 * 109.46984 * 180.02562 * 7 6 5 9 9 C 1.46897 * 111.00336 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47111 * 325.00006 * 9 8 7 11 11 C 1.53005 * 109.47196 * 84.99406 * 9 8 7 12 12 C 1.50691 * 109.47694 * 205.00049 * 9 8 7 13 13 H 1.08005 * 119.99916 * 354.48174 * 12 9 8 14 14 C 1.37879 * 120.00577 * 174.47966 * 12 9 8 15 15 N 1.31510 * 120.00198 * 164.58060 * 14 12 9 16 16 Si 1.86797 * 119.99486 * 344.86619 * 14 12 9 17 17 H 1.48500 * 109.47007 * 269.71594 * 16 14 12 18 18 H 1.48498 * 109.47775 * 29.72179 * 16 14 12 19 19 H 1.48508 * 109.46999 * 149.72292 * 16 14 12 20 20 C 1.39870 * 107.91970 * 0.25962 * 5 4 3 21 21 N 1.30835 * 108.20260 * 359.55464 * 20 5 4 22 22 H 1.09001 * 109.47631 * 300.00078 * 1 2 3 23 23 H 1.09004 * 109.47196 * 60.00042 * 1 2 3 24 24 H 1.09001 * 109.47061 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47314 * 240.00254 * 2 1 3 26 26 H 1.09000 * 109.46741 * 119.99374 * 2 1 3 27 27 H 1.08003 * 126.12352 * 0.02880 * 4 3 2 28 28 H 1.09006 * 109.46641 * 330.00016 * 6 5 4 29 29 H 1.08999 * 109.47544 * 210.00092 * 6 5 4 30 30 H 1.08989 * 109.47114 * 60.00518 * 7 6 5 31 31 H 1.08998 * 109.47053 * 299.99896 * 7 6 5 32 32 H 1.00905 * 111.00052 * 303.95588 * 8 7 6 33 33 H 1.08994 * 109.47024 * 173.54296 * 11 9 8 34 34 H 1.08994 * 109.47388 * 293.55052 * 11 9 8 35 35 H 1.09005 * 109.46503 * 53.54384 * 11 9 8 36 36 H 0.96999 * 120.00545 * 355.19703 * 15 14 12 37 37 H 1.08009 * 125.89594 * 179.74045 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0710 3.2138 0.5464 6 6 3.9537 4.2004 1.2666 7 6 5.3668 4.1411 0.6831 8 7 6.2274 5.1023 1.3855 9 6 7.5951 5.0737 0.8503 10 1 7.8507 4.0543 0.5609 11 6 7.6833 5.9884 -0.3730 12 6 8.5579 5.5524 1.9060 13 1 8.1841 5.9323 2.8454 14 6 9.9160 5.5055 1.6729 15 7 10.7388 6.1865 2.4401 16 14 10.5865 4.4808 0.2623 17 1 10.8790 3.1068 0.7439 18 1 9.5796 4.4195 -0.8274 19 1 11.8342 5.1014 -0.2509 20 6 2.3066 3.4744 -0.5956 21 7 1.6799 2.3750 -0.9275 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.3191 1.4126 1.7357 28 1 3.9877 3.9507 2.3271 29 1 3.5513 5.2058 1.1428 30 1 5.3328 4.3907 -0.3773 31 1 5.7691 3.1357 0.8070 32 1 5.8413 6.0335 1.3405 33 1 8.7205 6.0572 -0.7011 34 1 7.0740 5.5781 -1.1782 35 1 7.3183 6.9815 -0.1111 36 1 10.3872 6.7762 3.1253 37 1 2.2467 4.4193 -1.1155 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869086.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:36 Heat of formation + Delta-G solvation = 44.194757 kcal Electronic energy + Delta-G solvation = -16295.634013 eV Core-core repulsion = 13687.359324 eV Total energy + Delta-G solvation = -2608.274689 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.11394 -38.16949 -35.74240 -34.77994 -33.26079 -31.19494 -30.43969 -27.57303 -26.69269 -24.69830 -23.35128 -21.84639 -21.58961 -20.82955 -19.53155 -17.79776 -16.59683 -16.31755 -16.07361 -15.63385 -15.25897 -15.12945 -14.81585 -14.31686 -14.01708 -13.89160 -13.57682 -13.40284 -13.17349 -13.01185 -12.91979 -12.48107 -12.29740 -12.18815 -11.97909 -11.88729 -11.44165 -11.29632 -11.00182 -10.44396 -10.33605 -9.26641 -9.03684 -8.62666 -6.28049 0.98138 1.48937 1.53962 1.68037 1.71922 1.85981 2.53240 3.11683 3.52725 3.71731 4.00280 4.09754 4.19420 4.26632 4.38486 4.47415 4.51221 4.57986 4.67965 4.75067 4.80873 4.83207 4.88117 4.91162 4.99336 5.09029 5.21823 5.32495 5.43308 5.47137 5.76497 5.91783 6.12517 6.18734 6.46769 6.76791 6.77923 6.84142 7.49653 8.70326 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043653 B = 0.004253 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.274706 B = 6581.983641 C = 6733.840647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 N -0.377 5.377 4 C 0.057 3.943 5 C -0.245 4.245 6 C -0.024 4.024 7 C 0.070 3.930 8 N -0.689 5.689 9 C 0.189 3.811 10 H 0.026 0.974 11 C -0.169 4.169 12 C -0.583 4.583 13 H 0.020 0.980 14 C -0.026 4.026 15 N -0.946 5.946 16 Si 1.085 2.915 17 H -0.276 1.276 18 H -0.241 1.241 19 H -0.287 1.287 20 C 0.042 3.958 21 N -0.329 5.329 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.123 0.877 27 H 0.197 0.803 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.021 0.979 31 H 0.053 0.947 32 H 0.333 0.667 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.252 0.748 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.882 -12.408 -6.643 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.000 4.000 3 N -0.160 5.160 4 C -0.090 4.090 5 C -0.257 4.257 6 C -0.063 4.063 7 C -0.059 4.059 8 N -0.319 5.319 9 C 0.079 3.921 10 H 0.044 0.956 11 C -0.229 4.229 12 C -0.622 4.622 13 H 0.039 0.961 14 C -0.223 4.223 15 N -0.583 5.583 16 Si 0.906 3.094 17 H -0.202 1.202 18 H -0.165 1.165 19 H -0.213 1.213 20 C -0.144 4.144 21 N -0.151 5.151 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.118 0.882 25 H 0.106 0.894 26 H 0.141 0.859 27 H 0.214 0.786 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -19.235 -14.072 -7.670 25.036 hybrid contribution -0.642 1.828 0.947 2.157 sum -19.878 -12.243 -6.723 24.294 Atomic orbital electron populations 1.22001 0.93489 1.03953 1.02126 1.22034 0.96368 0.76137 1.05416 1.48965 1.35504 1.10873 1.20631 1.22814 0.94823 0.94598 0.96730 1.20148 1.07903 0.95923 1.01761 1.19674 0.90843 0.97166 0.98581 1.21949 0.92985 0.96067 0.94948 1.60567 1.02311 1.10673 1.58389 1.19363 0.87012 0.94412 0.91338 0.95649 1.22701 1.00860 1.00363 0.98930 1.22250 0.92974 1.44915 1.02046 0.96138 1.27142 0.94300 0.97591 1.03219 1.70925 1.38282 1.26813 1.22272 0.83620 0.76005 0.75345 0.74433 1.20183 1.16488 1.21298 1.24102 0.95830 0.97904 0.96531 1.77197 1.25202 0.97681 1.15027 0.92875 0.93137 0.88226 0.89353 0.85856 0.78590 0.91025 0.90951 0.96124 0.92799 0.84965 0.93635 0.93218 0.93608 0.93955 0.78990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 10.10 71.98 0.73 -1.15 16 2 C 0.12 1.55 7.23 86.38 0.62 2.18 16 3 N -0.38 -8.06 3.68 -348.07 -1.28 -9.34 16 4 C 0.06 1.22 11.36 83.54 0.95 2.17 16 5 C -0.25 -6.05 5.35 -20.15 -0.11 -6.15 16 6 C -0.02 -0.62 5.96 29.85 0.18 -0.44 16 7 C 0.07 2.28 5.47 86.30 0.47 2.75 16 8 N -0.69 -27.99 6.23 -495.46 -3.09 -31.08 16 9 C 0.19 8.88 2.12 44.17 0.09 8.97 16 10 H 0.03 1.21 6.43 -2.38 -0.02 1.20 16 11 C -0.17 -7.12 8.45 71.98 0.61 -6.51 16 12 C -0.58 -33.85 9.12 25.60 0.23 -33.62 16 13 H 0.02 1.32 8.06 -2.91 -0.02 1.30 16 14 C -0.03 -1.51 5.33 84.66 0.45 -1.06 16 15 N -0.95 -60.48 13.70 21.45 0.29 -60.19 16 16 Si 1.08 50.50 26.17 68.60 1.80 52.30 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.24 -9.87 5.53 99.48 0.55 -9.32 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 20 C 0.04 1.03 11.96 85.24 1.02 2.05 16 21 N -0.33 -8.62 12.42 -57.02 -0.71 -9.32 16 22 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.12 0.88 8.07 -2.39 -0.02 0.86 16 27 H 0.20 3.05 8.06 -2.91 -0.02 3.02 16 28 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.02 0.66 7.57 -2.39 -0.02 0.65 16 31 H 0.05 1.84 8.06 -2.39 -0.02 1.82 16 32 H 0.33 12.77 8.39 -89.69 -0.75 12.02 16 33 H 0.04 1.97 5.06 -2.39 -0.01 1.96 16 34 H 0.05 1.79 7.63 -2.39 -0.02 1.77 16 35 H 0.04 1.87 8.01 -2.38 -0.02 1.85 16 36 H 0.25 16.34 8.73 -92.71 -0.81 15.53 16 37 H 0.19 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -71.66 305.35 2.35 -69.30 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.09 Total: 19.14 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 5.25 Total: -30.82 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.78 Total: -109.93 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 1.80 Total: 52.30 kcal Total: -71.66 2.35 -69.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869086.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.499 kcal (2) G-P(sol) polarization free energy of solvation -71.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds