Wall clock time and date at job start Sun Mar 29 2020 21:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46797 * 2 1 4 4 C 1.34951 * 126.03843 * 125.00129 * 3 2 1 5 5 C 1.35315 * 107.74606 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.03764 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47391 * 90.00165 * 6 5 4 8 8 N 1.46897 * 109.47250 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99696 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47414 * 35.00300 * 9 8 7 11 11 C 1.53003 * 109.47203 * 274.99329 * 9 8 7 12 12 C 1.50703 * 109.46791 * 154.99921 * 9 8 7 13 13 H 1.08000 * 120.00340 * 33.98859 * 12 9 8 14 14 C 1.37880 * 120.00011 * 214.26275 * 12 9 8 15 15 N 1.31511 * 120.00335 * 181.73950 * 14 12 9 16 16 Si 1.86803 * 119.99659 * 1.74056 * 14 12 9 17 17 H 1.48498 * 109.47474 * 85.07701 * 16 14 12 18 18 H 1.48503 * 109.46970 * 205.07591 * 16 14 12 19 19 H 1.48502 * 109.47299 * 325.07284 * 16 14 12 20 20 C 1.39867 * 107.91939 * 0.25853 * 5 4 3 21 21 N 1.30838 * 108.20507 * 359.56098 * 20 5 4 22 22 H 1.08996 * 109.47366 * 300.00100 * 1 2 3 23 23 H 1.09003 * 109.47149 * 60.00324 * 1 2 3 24 24 H 1.09002 * 109.46853 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47366 * 239.99900 * 2 1 3 26 26 H 1.09001 * 109.46919 * 119.99193 * 2 1 3 27 27 H 1.07994 * 126.12385 * 0.03379 * 4 3 2 28 28 H 1.08994 * 109.47476 * 329.99405 * 6 5 4 29 29 H 1.09008 * 109.47012 * 209.99664 * 6 5 4 30 30 H 1.08994 * 109.47431 * 59.99212 * 7 6 5 31 31 H 1.09008 * 109.46633 * 299.99731 * 7 6 5 32 32 H 1.00902 * 111.00017 * 56.04346 * 8 7 6 33 33 H 1.09005 * 109.46437 * 64.43279 * 11 9 8 34 34 H 1.08997 * 109.47095 * 184.43339 * 11 9 8 35 35 H 1.08993 * 109.47202 * 304.43407 * 11 9 8 36 36 H 0.96998 * 119.99896 * 180.02562 * 15 14 12 37 37 H 1.08000 * 125.89689 * 179.73542 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0711 3.2139 0.5463 6 6 3.9538 4.2004 1.2666 7 6 5.3669 4.1411 0.6831 8 7 6.2274 5.1023 1.3856 9 6 7.5954 5.0727 0.8511 10 1 7.5623 4.8847 -0.2220 11 6 8.3881 3.9598 1.5398 12 6 8.2640 6.3986 1.1083 13 1 8.0349 6.9539 2.0059 14 6 9.1640 6.9055 0.1950 15 7 9.7732 8.0460 0.4355 16 14 9.5181 5.9723 -1.3840 17 1 8.5010 6.3258 -2.4066 18 1 10.8686 6.3371 -1.8823 19 1 9.4663 4.5122 -1.1183 20 6 2.3068 3.4744 -0.5957 21 7 1.6799 2.3750 -0.9276 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.3191 1.4127 1.7357 28 1 3.9877 3.9508 2.3270 29 1 3.5514 5.2059 1.1426 30 1 5.3330 4.3907 -0.3773 31 1 5.7692 3.1356 0.8070 32 1 6.2242 4.9310 2.3800 33 1 7.9503 2.9935 1.2893 34 1 9.4237 3.9883 1.2011 35 1 8.3549 4.1048 2.6195 36 1 10.4060 8.4027 -0.2072 37 1 2.2468 4.4192 -1.1156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:38 Heat of formation + Delta-G solvation = 67.298924 kcal Electronic energy + Delta-G solvation = -16299.221194 eV Core-core repulsion = 13691.948376 eV Total energy + Delta-G solvation = -2607.272817 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.18606 -36.49833 -34.78402 -33.00903 -31.63557 -30.29197 -29.09297 -26.29009 -25.13437 -23.92720 -22.04896 -20.74525 -20.11226 -19.70345 -16.99931 -16.83417 -15.57841 -14.84217 -14.69293 -14.35401 -14.26472 -13.77215 -13.33735 -12.99034 -12.81905 -12.46281 -12.39300 -12.32758 -11.83986 -11.72827 -11.66887 -11.29917 -11.02055 -10.73647 -10.58964 -10.33585 -10.01070 -9.69628 -9.41177 -9.07766 -8.50249 -8.25415 -7.27836 -5.99823 -3.96691 1.89405 2.45572 2.86908 3.33089 3.40612 3.41567 4.28189 4.47336 4.64506 4.77564 4.87743 4.96819 5.09858 5.23649 5.36826 5.42126 5.51002 5.64648 5.78061 5.83963 5.90239 6.06053 6.11957 6.26051 6.40972 6.54647 6.60855 6.65746 6.73390 6.88720 7.02487 7.18451 7.71921 7.77508 8.04810 8.47122 8.74039 9.08309 9.63359 11.14026 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043450 B = 0.004342 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.258433 B = 6447.739100 C = 6536.761107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.378 5.378 4 C 0.048 3.952 5 C -0.222 4.222 6 C -0.039 4.039 7 C 0.063 3.937 8 N -0.676 5.676 9 C 0.180 3.820 10 H 0.034 0.966 11 C -0.170 4.170 12 C -0.491 4.491 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.903 5.903 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.268 1.268 20 C 0.053 3.947 21 N -0.301 5.301 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.169 0.831 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.014 0.986 32 H 0.326 0.674 33 H 0.018 0.982 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.824 -16.305 0.612 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 N -0.162 5.162 4 C -0.097 4.097 5 C -0.234 4.234 6 C -0.078 4.078 7 C -0.067 4.067 8 N -0.306 5.306 9 C 0.072 3.928 10 H 0.052 0.948 11 C -0.230 4.230 12 C -0.529 4.529 13 H 0.094 0.906 14 C -0.132 4.132 15 N -0.542 5.542 16 Si 0.702 3.298 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.193 1.193 20 C -0.133 4.133 21 N -0.122 5.122 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.187 0.813 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.143 0.857 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.736 -16.350 -0.692 23.407 hybrid contribution 1.260 -0.993 0.028 1.604 sum -15.476 -17.342 -0.664 23.253 Atomic orbital electron populations 1.22050 0.93962 1.02631 1.03582 1.21617 0.95924 0.77868 1.03525 1.48602 1.36111 1.10001 1.21473 1.22328 0.95954 0.94821 0.96598 1.20207 1.06887 0.95168 1.01144 1.19897 0.93115 0.97145 0.97640 1.21955 0.92023 0.93653 0.99067 1.60883 1.11984 1.50696 1.07003 1.19618 0.84129 0.94824 0.94242 0.94753 1.22659 1.01587 0.97856 1.00871 1.20900 1.21700 1.02618 1.07699 0.90576 1.24970 0.95810 0.94670 0.97792 1.69888 1.28610 1.19350 1.36314 0.86921 0.77538 0.80709 0.84584 1.20167 1.21574 1.19345 1.23866 0.95718 0.97387 0.96317 1.77263 1.24287 0.96960 1.13689 0.92130 0.91113 0.90900 0.90055 0.88870 0.81335 0.91980 0.90303 0.91889 0.96820 0.85699 0.96268 0.93034 0.93548 0.92744 0.80042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 10.10 37.16 0.38 -0.77 16 2 C 0.13 1.01 7.23 -4.04 -0.03 0.99 16 3 N -0.38 -4.44 3.68 -61.36 -0.23 -4.67 16 4 C 0.05 0.56 11.36 -17.22 -0.20 0.37 16 5 C -0.22 -2.97 5.35 -105.06 -0.56 -3.53 16 6 C -0.04 -0.55 5.96 -27.88 -0.17 -0.71 16 7 C 0.06 1.09 5.47 -3.83 -0.02 1.07 16 8 N -0.68 -13.92 6.23 -107.95 -0.67 -14.60 16 9 C 0.18 4.30 2.17 -68.86 -0.15 4.15 16 10 H 0.03 0.85 5.13 -51.93 -0.27 0.59 16 11 C -0.17 -3.63 9.12 37.16 0.34 -3.29 16 12 C -0.49 -13.96 9.20 -34.44 -0.32 -14.28 16 13 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 16 Si 0.87 21.96 26.70 -169.99 -4.54 17.42 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.27 -6.45 6.86 56.52 0.39 -6.06 16 20 C 0.05 0.72 11.96 -17.37 -0.21 0.52 16 21 N -0.30 -4.22 12.42 30.62 0.38 -3.84 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 27 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 30 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 31 H 0.01 0.23 7.52 -51.92 -0.39 -0.16 16 32 H 0.33 6.19 8.42 -39.29 -0.33 5.86 16 33 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 34 H 0.05 1.14 7.87 -51.93 -0.41 0.73 16 35 H 0.05 0.93 8.05 -51.93 -0.42 0.51 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 309.46 15.07 4.66 4.66 Total: -1.00 -32.81 309.46 -6.65 -39.46 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.00 Total: 2.34 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -1.03 Total: -13.58 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.26 Total: -50.30 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.54 Total: 17.42 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.81 -6.65 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.756 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds