Wall clock time and date at job start Sun Mar 29 2020 21:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46797 * 2 1 4 4 C 1.34951 * 126.03843 * 125.00129 * 3 2 1 5 5 C 1.35315 * 107.74606 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.03764 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47391 * 90.00165 * 6 5 4 8 8 N 1.46897 * 109.47250 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99696 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47414 * 35.00300 * 9 8 7 11 11 C 1.53003 * 109.47203 * 274.99329 * 9 8 7 12 12 C 1.50703 * 109.46791 * 154.99921 * 9 8 7 13 13 H 1.08000 * 120.00340 * 33.98859 * 12 9 8 14 14 C 1.37880 * 120.00011 * 214.26275 * 12 9 8 15 15 N 1.31511 * 120.00335 * 181.73950 * 14 12 9 16 16 Si 1.86803 * 119.99659 * 1.74056 * 14 12 9 17 17 H 1.48498 * 109.47474 * 85.07701 * 16 14 12 18 18 H 1.48503 * 109.46970 * 205.07591 * 16 14 12 19 19 H 1.48502 * 109.47299 * 325.07284 * 16 14 12 20 20 C 1.39867 * 107.91939 * 0.25853 * 5 4 3 21 21 N 1.30838 * 108.20507 * 359.56098 * 20 5 4 22 22 H 1.08996 * 109.47366 * 300.00100 * 1 2 3 23 23 H 1.09003 * 109.47149 * 60.00324 * 1 2 3 24 24 H 1.09002 * 109.46853 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47366 * 239.99900 * 2 1 3 26 26 H 1.09001 * 109.46919 * 119.99193 * 2 1 3 27 27 H 1.07994 * 126.12385 * 0.03379 * 4 3 2 28 28 H 1.08994 * 109.47476 * 329.99405 * 6 5 4 29 29 H 1.09008 * 109.47012 * 209.99664 * 6 5 4 30 30 H 1.08994 * 109.47431 * 59.99212 * 7 6 5 31 31 H 1.09008 * 109.46633 * 299.99731 * 7 6 5 32 32 H 1.00902 * 111.00017 * 56.04346 * 8 7 6 33 33 H 1.09005 * 109.46437 * 64.43279 * 11 9 8 34 34 H 1.08997 * 109.47095 * 184.43339 * 11 9 8 35 35 H 1.08993 * 109.47202 * 304.43407 * 11 9 8 36 36 H 0.96998 * 119.99896 * 180.02562 * 15 14 12 37 37 H 1.08000 * 125.89689 * 179.73542 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0711 3.2139 0.5463 6 6 3.9538 4.2004 1.2666 7 6 5.3669 4.1411 0.6831 8 7 6.2274 5.1023 1.3856 9 6 7.5954 5.0727 0.8511 10 1 7.5623 4.8847 -0.2220 11 6 8.3881 3.9598 1.5398 12 6 8.2640 6.3986 1.1083 13 1 8.0349 6.9539 2.0059 14 6 9.1640 6.9055 0.1950 15 7 9.7732 8.0460 0.4355 16 14 9.5181 5.9723 -1.3840 17 1 8.5010 6.3258 -2.4066 18 1 10.8686 6.3371 -1.8823 19 1 9.4663 4.5122 -1.1183 20 6 2.3068 3.4744 -0.5957 21 7 1.6799 2.3750 -0.9276 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.3191 1.4127 1.7357 28 1 3.9877 3.9508 2.3270 29 1 3.5514 5.2059 1.1426 30 1 5.3330 4.3907 -0.3773 31 1 5.7692 3.1356 0.8070 32 1 6.2242 4.9310 2.3800 33 1 7.9503 2.9935 1.2893 34 1 9.4237 3.9883 1.2011 35 1 8.3549 4.1048 2.6195 36 1 10.4060 8.4027 -0.2072 37 1 2.2468 4.4192 -1.1156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:38 Heat of formation + Delta-G solvation = 44.517238 kcal Electronic energy + Delta-G solvation = -16300.209082 eV Core-core repulsion = 13691.948376 eV Total energy + Delta-G solvation = -2608.260705 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10035 -38.11564 -35.68811 -34.65781 -33.29935 -31.19321 -30.44564 -27.51330 -27.17328 -24.68294 -23.34887 -21.89575 -21.56895 -20.81066 -18.98372 -17.80572 -16.61570 -16.36837 -16.17012 -15.65420 -15.24486 -14.98732 -14.71604 -14.45255 -14.05423 -13.88352 -13.67259 -13.25451 -13.09384 -12.97992 -12.88640 -12.73791 -12.51410 -12.19432 -11.96645 -11.83163 -11.72815 -11.32254 -11.11592 -10.69870 -10.32451 -9.23251 -8.90593 -8.23733 -6.25061 0.99494 1.35161 1.36312 1.45972 1.69705 1.86939 2.36933 3.08233 3.57960 3.76147 4.01598 4.10569 4.19697 4.30806 4.39445 4.47755 4.52530 4.59003 4.72741 4.73464 4.81553 4.82358 4.85711 4.98246 5.03681 5.08506 5.22727 5.33605 5.46953 5.48922 5.72432 5.76084 6.11675 6.21810 6.73010 6.78128 6.81042 6.90299 7.39093 8.93941 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043450 B = 0.004342 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.258433 B = 6447.739100 C = 6536.761107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 N -0.377 5.377 4 C 0.060 3.940 5 C -0.246 4.246 6 C -0.024 4.024 7 C 0.069 3.931 8 N -0.690 5.690 9 C 0.182 3.818 10 H 0.028 0.972 11 C -0.163 4.163 12 C -0.495 4.495 13 H 0.034 0.966 14 C 0.008 3.992 15 N -0.953 5.953 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.247 1.247 20 C 0.038 3.962 21 N -0.331 5.331 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.203 0.797 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.025 0.975 32 H 0.336 0.664 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.264 0.736 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.566 -19.404 0.634 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 N -0.160 5.160 4 C -0.087 4.087 5 C -0.258 4.258 6 C -0.063 4.063 7 C -0.060 4.060 8 N -0.321 5.321 9 C 0.073 3.927 10 H 0.046 0.954 11 C -0.222 4.222 12 C -0.534 4.534 13 H 0.052 0.948 14 C -0.188 4.188 15 N -0.594 5.594 16 Si 0.765 3.235 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.170 1.170 20 C -0.147 4.147 21 N -0.153 5.153 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.144 0.856 27 H 0.220 0.780 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.154 0.846 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -17.513 -19.480 -0.665 26.204 hybrid contribution 1.395 -0.056 0.113 1.401 sum -16.118 -19.536 -0.552 25.333 Atomic orbital electron populations 1.22005 0.93610 1.03932 1.02099 1.22035 0.96294 0.76100 1.05456 1.48982 1.35545 1.10846 1.20647 1.22831 0.94796 0.94313 0.96759 1.20178 1.07881 0.96019 1.01675 1.19683 0.91081 0.97084 0.98446 1.21943 0.93166 0.93048 0.97859 1.60633 1.10703 1.52816 1.07908 1.19445 0.85823 0.93069 0.94356 0.95362 1.22493 1.00508 0.98226 1.01003 1.21220 1.21759 1.04341 1.06067 0.94766 1.25831 0.95807 0.95620 1.01566 1.70044 1.29955 1.21511 1.37899 0.85864 0.77343 0.80426 0.79914 1.19834 1.21213 1.17037 1.24089 0.96009 0.97791 0.96803 1.77213 1.25254 0.97708 1.15124 0.92804 0.93328 0.88207 0.89487 0.85559 0.77986 0.90292 0.91344 0.93617 0.95669 0.84587 0.93181 0.94187 0.92836 0.92683 0.79568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.10 71.98 0.73 -1.13 16 2 C 0.12 1.48 7.23 86.38 0.62 2.11 16 3 N -0.38 -7.93 3.68 -348.06 -1.28 -9.22 16 4 C 0.06 1.20 11.36 83.54 0.95 2.15 16 5 C -0.25 -6.08 5.35 -20.15 -0.11 -6.19 16 6 C -0.02 -0.63 5.96 29.85 0.18 -0.45 16 7 C 0.07 2.25 5.47 86.30 0.47 2.72 16 8 N -0.69 -27.57 6.23 -495.45 -3.09 -30.65 16 9 C 0.18 8.47 2.17 44.17 0.10 8.56 16 10 H 0.03 1.35 5.13 -2.39 -0.01 1.34 16 11 C -0.16 -6.53 9.12 71.98 0.66 -5.87 16 12 C -0.50 -28.62 9.20 25.60 0.24 -28.38 16 13 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 14 C 0.01 0.48 5.47 84.66 0.46 0.95 16 15 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 16 Si 0.94 45.19 26.70 68.60 1.83 47.02 16 17 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 19 H -0.25 -10.89 6.86 99.48 0.68 -10.21 16 20 C 0.04 1.01 11.96 85.24 1.02 2.03 16 21 N -0.33 -8.97 12.42 -57.02 -0.71 -9.68 16 22 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.13 0.73 8.07 -2.39 -0.02 0.71 16 27 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.91 8.14 -2.38 -0.02 1.90 16 30 H 0.05 1.64 8.06 -2.39 -0.02 1.62 16 31 H 0.03 0.77 7.52 -2.38 -0.02 0.75 16 32 H 0.34 12.23 8.42 -89.69 -0.76 11.48 16 33 H 0.05 1.69 7.57 -2.38 -0.02 1.68 16 34 H 0.04 1.67 7.87 -2.39 -0.02 1.65 16 35 H 0.05 2.04 8.05 -2.39 -0.02 2.02 16 36 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.19 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -72.15 309.46 2.63 -69.52 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.26 Total: 16.82 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 5.31 Total: -23.49 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -4.78 Total: -109.87 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.83 Total: 47.02 kcal Total: -72.15 2.63 -69.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.039 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds