Wall clock time and date at job start Sun Mar 29 2020 21:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.53007 * 109.47012 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47124 * 180.02562 * 15 14 13 17 17 C 1.34665 * 126.59437 * 85.02148 * 16 15 14 18 18 N 1.34128 * 108.02228 * 179.97438 * 17 16 15 19 19 C 1.30503 * 109.25385 * 0.02562 * 18 17 16 20 20 N 1.35041 * 108.70133 * 359.76186 * 19 18 17 21 21 C 1.46503 * 126.39968 * 180.26598 * 20 19 18 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 27 27 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 28 28 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 29 29 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 30 30 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 31 31 H 1.09001 * 109.47146 * 300.00243 * 15 14 13 32 32 H 1.08998 * 109.46587 * 60.00003 * 15 14 13 33 33 H 1.08000 * 125.98906 * 359.97259 * 17 16 15 34 34 H 1.08005 * 125.64700 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.47039 * 270.12697 * 21 20 19 36 36 H 1.09004 * 109.46888 * 30.12781 * 21 20 19 37 37 H 1.08998 * 109.47069 * 150.12439 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4208 -4.7691 16 6 3.1676 -0.3234 -5.9782 17 6 2.4320 -1.0580 -6.8342 18 7 3.2554 -1.5518 -7.7708 19 6 4.4735 -1.1515 -7.5273 20 7 4.4620 -0.3785 -6.4200 21 6 5.6191 0.2769 -5.8053 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 0.7089 1.1611 3.4845 26 1 2.9172 -1.1204 -1.0288 27 1 1.0871 0.6165 -2.5525 28 1 2.7588 1.0464 -2.1181 29 1 3.5917 -0.9260 -3.3683 30 1 1.9201 -1.3564 -3.8032 31 1 1.6669 0.8145 -4.9752 32 1 3.3384 1.2443 -4.5399 33 1 1.3660 -1.2210 -6.7766 34 1 5.3455 -1.3944 -8.1165 35 1 6.0691 -0.3928 -5.0725 36 1 6.3518 0.5178 -6.5756 37 1 5.2973 1.1933 -5.3107 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602871520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:58 Heat of formation + Delta-G solvation = 46.842106 kcal Electronic energy + Delta-G solvation = -16299.979369 eV Core-core repulsion = 13691.819478 eV Total energy + Delta-G solvation = -2608.159891 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.12147 -36.49871 -34.41239 -33.88022 -32.16159 -29.66113 -27.58337 -27.10328 -25.31678 -24.32743 -21.50105 -21.18851 -20.01084 -19.58773 -17.09217 -16.47719 -15.77811 -15.38855 -14.83061 -14.37410 -14.20851 -13.61214 -13.52223 -13.13919 -13.01931 -12.80592 -12.66784 -11.99537 -11.80671 -11.53616 -11.01086 -10.89838 -10.72677 -10.55071 -10.20753 -10.10883 -10.00571 -9.85881 -9.63148 -8.84077 -8.48128 -8.32911 -7.26864 -6.03650 -4.10250 1.98264 2.69194 3.14273 3.29862 3.34449 3.37325 4.38651 4.50255 4.59957 4.64163 4.86349 4.97701 5.13684 5.16312 5.28042 5.35553 5.54428 5.69162 5.79131 5.81974 5.97637 6.13504 6.29462 6.52786 6.58004 6.72897 6.89098 7.11493 7.14237 7.23880 7.50966 7.77023 7.89629 8.02884 8.27267 8.38954 8.67314 9.00480 9.55712 11.02662 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045335 B = 0.003954 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.473024 B = 7079.203774 C = 7324.507026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.690 5.690 13 C 0.061 3.939 14 C -0.108 4.108 15 C -0.044 4.044 16 C -0.012 4.012 17 C -0.030 4.030 18 N -0.495 5.495 19 C 0.169 3.831 20 N -0.460 5.460 21 C 0.071 3.929 22 H 0.031 0.969 23 H 0.080 0.920 24 H 0.004 0.996 25 H 0.261 0.739 26 H 0.329 0.671 27 H 0.064 0.936 28 H 0.016 0.984 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.169 0.831 34 H 0.202 0.798 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.950 0.963 -15.593 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.320 5.320 13 C -0.069 4.069 14 C -0.146 4.146 15 C -0.083 4.083 16 C -0.126 4.126 17 C -0.178 4.178 18 N -0.213 5.213 19 C -0.112 4.112 20 N -0.144 5.144 21 C -0.072 4.072 22 H 0.050 0.950 23 H 0.099 0.901 24 H 0.023 0.977 25 H 0.071 0.929 26 H 0.145 0.855 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.186 0.814 34 H 0.218 0.782 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.127 0.414 -16.202 17.705 hybrid contribution 1.450 0.628 1.769 2.372 sum 8.577 1.041 -14.433 16.821 Atomic orbital electron populations 1.21712 0.97871 0.99352 0.99318 1.19102 0.92665 0.92251 0.85639 0.98264 1.21240 1.31545 1.12512 0.90528 0.92312 1.24926 0.95043 0.94994 0.99042 1.69891 1.36587 1.22870 1.23565 0.86580 0.79023 0.79837 0.82064 1.21275 1.20153 1.20371 1.60709 1.31950 1.33240 1.06145 1.21896 0.99686 0.94039 0.91285 1.21564 1.01417 0.98440 0.93207 1.20083 1.01529 0.96785 0.89893 1.21398 0.83849 1.06489 1.00902 1.22072 0.99842 1.01749 0.94101 1.70246 1.00362 1.24225 1.26432 1.24856 0.98183 0.97570 0.90629 1.45315 1.07786 1.38589 1.22719 1.22043 0.86916 0.98794 0.99460 0.94963 0.90150 0.97701 0.92865 0.85454 0.91723 0.96611 0.92810 0.90822 0.89415 0.91534 0.81415 0.78170 0.90352 0.89562 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 2 C 0.21 5.38 2.60 -68.87 -0.18 5.20 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.32 8.59 -34.44 -0.30 -14.61 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.69 -14.71 6.30 -107.95 -0.68 -15.39 16 13 C 0.06 1.06 5.48 -3.82 -0.02 1.04 16 14 C -0.11 -1.50 5.46 -26.73 -0.15 -1.65 16 15 C -0.04 -0.50 5.55 -27.88 -0.15 -0.66 16 16 C -0.01 -0.14 6.21 -81.60 -0.51 -0.65 16 17 C -0.03 -0.41 11.79 -17.81 -0.21 -0.62 16 18 N -0.49 -6.97 11.25 -14.66 -0.16 -7.14 16 19 C 0.17 1.86 12.56 -90.37 -1.14 0.73 16 20 N -0.46 -4.85 3.15 -121.36 -0.38 -5.23 16 21 C 0.07 0.47 11.00 59.85 0.66 1.13 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 24 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.33 6.84 8.22 -39.30 -0.32 6.52 16 27 H 0.06 1.14 7.44 -51.93 -0.39 0.76 16 28 H 0.02 0.28 8.05 -51.93 -0.42 -0.14 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.70 7.09 -51.93 -0.37 0.33 16 33 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 34 H 0.20 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.55 7.11 -51.93 -0.37 0.18 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -31.63 306.76 -8.63 -40.26 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.89 Total: 2.78 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -1.74 Total: -11.26 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.60 Total: -52.61 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.63 -8.63 -40.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602871520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.098 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds